Wall clock time and date at job start Tue Mar 31 2020 07:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 N 1.46506 * 109.46836 * 119.99875 * 2 1 3 5 5 C 1.46496 * 120.00025 * 304.69419 * 4 2 1 6 6 C 1.50697 * 109.47328 * 270.00565 * 5 4 2 7 7 H 1.07994 * 120.00125 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99826 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99974 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 120.00034 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.46910 * 90.00201 * 10 8 6 12 12 H 1.48498 * 109.46925 * 210.00159 * 10 8 6 13 13 H 1.48494 * 109.46910 * 330.00040 * 10 8 6 14 14 C 1.34777 * 119.99908 * 124.70357 * 4 2 1 15 15 O 1.21720 * 120.00078 * 4.73981 * 14 4 2 16 16 C 1.46240 * 119.99914 * 184.74365 * 14 4 2 17 17 C 1.35002 * 119.99832 * 174.73118 * 16 14 4 18 18 C 1.46948 * 119.99734 * 179.97438 * 17 16 14 19 19 C 1.39929 * 120.21348 * 0.02562 * 18 17 16 20 20 C 1.37745 * 119.88121 * 180.02562 * 19 18 17 21 21 C 1.38573 * 120.32002 * 359.97438 * 20 19 18 22 22 C 1.38124 * 120.43475 * 0.02562 * 21 20 19 23 23 C 1.38609 * 120.11299 * 359.97438 * 22 21 20 24 24 O 1.35686 * 120.16298 * 180.02562 * 23 22 21 25 25 C 1.42900 * 117.00083 * 0.02562 * 24 23 22 26 26 F 1.39905 * 109.47161 * 300.00195 * 25 24 23 27 27 F 1.39904 * 109.46887 * 59.99894 * 25 24 23 28 28 H 1.09000 * 109.46726 * 300.00266 * 1 2 3 29 29 H 1.08998 * 109.46805 * 60.00072 * 1 2 3 30 30 H 1.08999 * 109.46843 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47194 * 239.99985 * 2 1 3 32 32 H 1.09004 * 109.47039 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47257 * 299.99652 * 3 2 1 34 34 H 1.08992 * 109.47337 * 59.99659 * 3 2 1 35 35 H 1.09006 * 109.47008 * 30.00271 * 5 4 2 36 36 H 1.09000 * 109.46904 * 149.99986 * 5 4 2 37 37 H 0.96996 * 120.00416 * 179.97438 * 9 8 6 38 38 H 1.08000 * 120.00102 * 354.73041 * 16 14 4 39 39 H 1.08000 * 120.00066 * 359.97438 * 17 16 14 40 40 H 1.07997 * 120.05663 * 0.04474 * 19 18 17 41 41 H 1.08003 * 119.84077 * 179.97438 * 20 19 18 42 42 H 1.08008 * 119.78286 * 179.72549 * 21 20 19 43 43 H 1.08001 * 119.94450 * 179.97438 * 22 21 20 44 44 H 1.08995 * 109.47313 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5816 -0.2529 2.5243 6 6 2.5332 0.7924 3.0468 7 1 3.3784 1.1002 2.4493 8 6 2.3246 1.3557 4.2879 9 7 3.1552 2.2675 4.7442 10 14 0.8620 0.8239 5.3213 11 1 1.2543 -0.3209 6.1818 12 1 0.4209 1.9563 6.1746 13 1 -0.2515 0.4135 4.4287 14 6 2.8695 -1.7286 1.0749 15 8 3.3001 -2.0377 -0.0208 16 6 3.2756 -2.4835 2.2597 17 6 4.0422 -3.5868 2.1270 18 6 4.4508 -4.3450 3.3176 19 6 4.0473 -3.9278 4.5909 20 6 4.4347 -4.6434 5.7023 21 6 5.2220 -5.7755 5.5660 22 6 5.6278 -6.1992 4.3155 23 6 5.2484 -5.4926 3.1849 24 8 5.6460 -5.9082 1.9560 25 6 6.4555 -7.0844 1.8992 26 9 7.6333 -6.8753 2.6247 27 9 5.7528 -8.1611 2.4511 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 0.5792 0.1700 2.4561 36 1 1.5707 -1.1060 3.2027 37 1 3.0083 2.6642 5.6170 38 1 2.9623 -2.1584 3.2408 39 1 4.3552 -3.9121 1.1459 40 1 3.4331 -3.0465 4.7019 41 1 4.1232 -4.3206 6.6848 42 1 5.5244 -6.3276 6.4437 43 1 6.2417 -7.0824 4.2184 44 1 6.7022 -7.3060 0.8610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069530687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:50 Heat of formation + Delta-G solvation = -135.638136 kcal Electronic energy + Delta-G solvation = -29518.044276 eV Core-core repulsion = 25071.872513 eV Total energy + Delta-G solvation = -4446.171763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.61199 -47.59715 -40.18600 -39.28625 -37.59022 -35.95196 -33.93657 -32.84272 -31.56677 -30.43715 -29.33625 -27.86859 -26.67125 -26.31885 -24.40677 -22.66659 -22.52128 -21.70978 -19.61823 -19.15301 -18.25947 -18.16859 -17.82653 -17.13121 -16.95195 -16.16557 -15.82778 -15.44854 -14.86225 -14.77763 -14.49802 -14.21138 -14.12300 -13.99571 -13.91971 -13.69217 -13.32203 -13.25895 -13.06109 -12.84225 -12.61125 -12.50403 -12.19060 -12.15500 -11.72592 -11.66109 -11.61065 -11.22325 -10.99391 -10.95339 -10.81660 -10.64240 -10.25238 -10.18282 -10.11512 -9.52113 -9.17761 -8.76291 -8.71089 -8.02990 -7.66525 -6.20696 -4.21107 0.69267 1.25944 2.23000 2.33398 3.14214 3.19902 3.23531 3.25072 3.64640 3.80190 4.03774 4.06722 4.25347 4.38149 4.60190 4.69893 4.94921 5.07544 5.09721 5.22365 5.36183 5.43639 5.55749 5.64876 5.71395 5.79093 5.90492 6.01371 6.11514 6.15676 6.19663 6.33066 6.37765 6.40324 6.46896 6.51663 6.60540 6.69307 6.78491 6.87516 6.96481 7.06677 7.40775 7.46152 8.14792 8.42828 8.85346 8.94219 9.38372 10.91851 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003401 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.094743 B = 8232.083437 C = 9807.161552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 C -0.155 4.155 4 N -0.579 5.579 5 C 0.204 3.796 6 C -0.535 4.535 7 H 0.081 0.919 8 C 0.076 3.924 9 N -0.890 5.890 10 Si 0.866 3.134 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.549 3.451 15 O -0.574 6.574 16 C -0.172 4.172 17 C -0.051 4.051 18 C -0.069 4.069 19 C -0.072 4.072 20 C -0.141 4.141 21 C -0.082 4.082 22 C -0.194 4.194 23 C 0.117 3.883 24 O -0.312 6.312 25 C 0.411 3.589 26 F -0.199 7.199 27 F -0.200 7.200 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -16.914 -2.072 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 C -0.213 4.213 4 N -0.309 5.309 5 C 0.083 3.917 6 C -0.573 4.573 7 H 0.099 0.901 8 C -0.127 4.127 9 N -0.528 5.528 10 Si 0.692 3.308 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.339 3.661 15 O -0.457 6.457 16 C -0.193 4.193 17 C -0.071 4.071 18 C -0.070 4.070 19 C -0.089 4.089 20 C -0.159 4.159 21 C -0.100 4.100 22 C -0.213 4.213 23 C 0.073 3.927 24 O -0.229 6.229 25 C 0.321 3.679 26 F -0.181 7.181 27 F -0.182 7.182 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.086 -16.839 -2.621 17.169 hybrid contribution -0.501 -0.240 1.153 1.280 sum 1.585 -17.079 -1.468 17.215 Atomic orbital electron populations 1.22145 0.95741 1.01628 1.02249 1.20881 0.93300 0.93787 0.88683 1.22115 1.01627 0.95488 1.02026 1.47872 1.44570 1.30194 1.08241 1.19857 0.96714 0.95759 0.79352 1.21418 1.11846 1.21303 1.02734 0.90092 1.24867 0.95930 0.94630 0.97283 1.69885 1.36640 1.27074 1.19167 0.87014 0.83794 0.78894 0.81093 1.19855 1.20910 1.18858 1.18130 0.78775 0.80509 0.88636 1.90704 1.56441 1.70176 1.28372 1.23260 1.00463 0.95919 0.99622 1.22012 0.94633 0.93543 0.96904 1.18419 1.00037 0.94183 0.94320 1.21485 0.97715 0.99195 0.90553 1.21113 0.99728 0.95941 0.99099 1.21022 0.96334 0.96123 0.96487 1.21408 1.05153 1.02164 0.92572 1.18959 0.96251 0.94537 0.82915 1.86608 1.65422 1.42214 1.28690 1.23412 0.74336 0.75450 0.94740 1.93100 1.49175 1.94351 1.81458 1.93093 1.79477 1.57126 1.88502 0.91733 0.92038 0.92956 0.89418 0.92686 0.93329 0.90289 0.94473 0.95365 0.92419 0.84423 0.84720 0.83919 0.85205 0.85455 0.84961 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.08 37.16 0.34 -2.13 16 2 C 0.14 2.53 3.24 -67.92 -0.22 2.31 16 3 C -0.15 -2.85 8.60 37.16 0.32 -2.53 16 4 N -0.58 -12.01 2.39 -169.16 -0.40 -12.41 16 5 C 0.20 4.44 3.57 -5.20 -0.02 4.42 16 6 C -0.53 -13.71 8.40 -34.44 -0.29 -14.00 16 7 H 0.08 2.35 7.83 -52.49 -0.41 1.94 16 8 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 10 Si 0.87 19.23 27.47 -169.99 -4.67 14.56 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 14 C 0.55 11.66 7.59 -13.05 -0.10 11.56 16 15 O -0.57 -13.17 15.59 5.17 0.08 -13.09 16 16 C -0.17 -3.26 8.61 -37.52 -0.32 -3.58 16 17 C -0.05 -0.88 9.20 -37.21 -0.34 -1.22 16 18 C -0.07 -1.07 5.88 -104.93 -0.62 -1.68 16 19 C -0.07 -1.04 9.41 -39.13 -0.37 -1.40 16 20 C -0.14 -1.73 10.02 -39.64 -0.40 -2.13 16 21 C -0.08 -0.93 10.03 -39.50 -0.40 -1.33 16 22 C -0.19 -2.43 8.25 -39.49 -0.33 -2.75 16 23 C 0.12 1.65 6.50 -38.64 -0.25 1.40 16 24 O -0.31 -3.93 9.61 -18.76 -0.18 -4.11 16 25 C 0.41 3.59 5.98 101.05 0.60 4.19 16 26 F -0.20 -2.02 15.58 2.25 0.04 -1.98 16 27 F -0.20 -1.96 15.59 2.25 0.04 -1.92 16 28 H 0.06 1.04 6.53 -51.93 -0.34 0.70 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.65 6.94 -51.93 -0.36 1.29 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 35 H 0.04 0.79 5.25 -51.93 -0.27 0.52 16 36 H 0.03 0.59 5.40 -51.93 -0.28 0.31 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.14 2.55 4.19 -52.49 -0.22 2.33 16 39 H 0.14 2.35 7.11 -52.49 -0.37 1.98 16 40 H 0.14 2.07 6.17 -52.49 -0.32 1.75 16 41 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.13 1.48 5.10 -52.49 -0.27 1.22 16 44 H 0.18 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -31.42 367.34 -6.61 -38.03 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.33 Total: 7.01 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.48 Total: -6.98 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.37 Total: -37.06 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.10 Total: -17.20 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.07 Total: -3.90 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.67 Total: 14.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.42 -6.61 -38.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069530687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.610 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds