Wall clock time and date at job start Tue Mar 31 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86806 * 119.99910 * 2 1 4 4 H 1.48500 * 109.46897 * 269.99414 * 3 2 1 5 5 H 1.48494 * 109.47115 * 29.99729 * 3 2 1 6 6 H 1.48500 * 109.47081 * 149.99683 * 3 2 1 7 7 C 1.39892 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00323 * 196.81641 * 7 2 1 9 9 C 1.41163 * 119.99657 * 16.82002 * 7 2 1 10 10 C 1.40865 * 120.16226 * 205.33910 * 9 7 2 11 11 C 1.36374 * 119.83053 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16479 * 0.02562 * 11 10 9 13 13 N 1.39239 * 119.82907 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99940 * 145.61029 * 13 12 11 15 15 O 1.21582 * 119.99841 * 354.84180 * 14 13 12 16 16 N 1.34777 * 119.99885 * 174.85712 * 14 13 12 17 17 C 1.46499 * 119.99676 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.27242 * 32.92238 * 17 16 14 19 19 C 1.51371 * 110.30516 * 270.74161 * 17 16 14 20 20 C 1.38497 * 130.39011 * 44.22450 * 19 17 16 21 21 C 1.38101 * 120.21681 * 180.18833 * 20 19 17 22 22 C 1.38254 * 119.93135 * 359.45055 * 21 20 19 23 23 C 1.38100 * 119.93844 * 0.27309 * 22 21 20 24 24 C 1.38212 * 109.75905 * 223.89073 * 19 17 16 25 25 C 1.51365 * 109.76335 * 359.97438 * 24 19 17 26 26 C 1.54349 * 105.16841 * 17.18869 * 25 24 19 27 27 H 1.09006 * 110.82135 * 215.43220 * 26 25 24 28 28 O 1.42901 * 110.82477 * 92.07992 * 26 25 24 29 29 C 1.39473 * 120.33477 * 0.24829 * 12 11 10 30 30 C 1.36384 * 120.16953 * 359.44547 * 29 12 11 31 31 H 0.96998 * 119.99606 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.08621 * 0.02562 * 10 9 7 33 33 H 1.07992 * 119.91589 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00331 * 325.60013 * 13 12 11 35 35 H 0.96995 * 120.00118 * 359.97438 * 16 14 13 36 36 H 1.08000 * 119.89105 * 359.91386 * 20 19 17 37 37 H 1.07997 * 120.03609 * 179.72291 * 21 20 19 38 38 H 1.07998 * 120.03010 * 180.25529 * 22 21 20 39 39 H 1.07996 * 119.89686 * 179.97438 * 23 22 21 40 40 H 1.08999 * 110.30322 * 136.11056 * 25 24 19 41 41 H 1.09002 * 110.30366 * 258.26742 * 25 24 19 42 42 H 0.96696 * 113.99652 * 61.45072 * 28 26 25 43 43 H 1.07997 * 119.91749 * 179.70156 * 29 12 11 44 44 H 1.08000 * 120.08750 * 180.24654 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4403 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0536 -1.2314 0.2711 9 6 1.3477 -2.4080 -0.3527 10 6 1.8187 -3.6452 0.1287 11 6 1.1757 -4.7970 -0.2173 12 6 0.0546 -4.7520 -1.0459 13 7 -0.5963 -5.9324 -1.3952 14 6 -1.9344 -5.9418 -1.5561 15 8 -2.5838 -4.9450 -1.3056 16 7 -2.5525 -7.0564 -1.9944 17 6 -4.0071 -7.0668 -2.1687 18 1 -4.3578 -6.0813 -2.4752 19 6 -4.6870 -7.4928 -0.8851 20 6 -4.4464 -7.1159 0.4257 21 6 -5.2032 -7.6469 1.4516 22 6 -6.2120 -8.5492 1.1690 23 6 -6.4571 -8.9219 -0.1379 24 6 -5.6954 -8.3947 -1.1676 25 6 -5.7628 -8.6362 -2.6604 26 6 -4.4143 -8.1277 -3.2130 27 1 -4.5445 -7.6743 -4.1957 28 8 -3.4559 -9.1862 -3.2673 29 6 -0.4143 -3.5314 -1.5311 30 6 0.2146 -2.3706 -1.1887 31 1 -0.4849 0.8401 -0.0004 32 1 2.6869 -3.6816 0.7701 33 1 1.5354 -5.7462 0.1513 34 1 -0.0867 -6.7478 -1.5228 35 1 -2.0344 -7.8516 -2.1943 36 1 -3.6615 -6.4078 0.6467 37 1 -5.0102 -7.3544 2.4731 38 1 -6.8075 -8.9623 1.9697 39 1 -7.2450 -9.6270 -0.3578 40 1 -5.8790 -9.7002 -2.8665 41 1 -6.5873 -8.0731 -3.0978 42 1 -3.7097 -9.9171 -3.8473 43 1 -1.2800 -3.5048 -2.1762 44 1 -0.1520 -1.4258 -1.5620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069557705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:11 Heat of formation + Delta-G solvation = -21.782264 kcal Electronic energy + Delta-G solvation = -28154.722686 eV Core-core repulsion = 24229.603181 eV Total energy + Delta-G solvation = -3925.119505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.78441 -39.42438 -37.59005 -37.17953 -34.73061 -34.20512 -33.32918 -32.73765 -30.89072 -29.41749 -28.89267 -28.40497 -26.75323 -24.66354 -22.66627 -21.75398 -21.29423 -21.12649 -20.51625 -19.84443 -18.12814 -17.44339 -17.24775 -16.96958 -16.05840 -15.69398 -15.53115 -15.18914 -14.90040 -14.64960 -14.22770 -13.92020 -13.86822 -13.34053 -13.31266 -13.08573 -13.05130 -12.77846 -12.60756 -12.01657 -11.83736 -11.78954 -11.52779 -11.47487 -11.33008 -11.08836 -10.94173 -10.86519 -10.47487 -10.45245 -9.91079 -9.81582 -9.47856 -9.20949 -8.87787 -8.78374 -8.67082 -8.62059 -7.44519 -6.90728 -6.65590 -4.21731 1.25926 1.35988 2.74321 3.05846 3.11907 3.14219 3.15361 3.22041 3.65420 3.75646 3.86913 3.98994 4.15001 4.31917 4.64797 4.72308 4.79481 4.83803 4.96628 5.08163 5.17973 5.30747 5.38220 5.47540 5.61249 5.70483 5.78254 5.90038 6.06204 6.22533 6.36383 6.44388 6.50402 6.52508 6.72145 6.90191 6.93339 6.95720 7.12389 7.19095 7.27440 7.37285 7.46869 7.69174 7.96017 8.08638 8.12998 8.34323 8.60621 8.70715 8.96174 9.00864 9.22202 10.27124 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.002457 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.626888 B =11392.862600 C =11880.250982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.214 4.214 11 C -0.108 4.108 12 C 0.017 3.983 13 N -0.667 5.667 14 C 0.692 3.308 15 O -0.576 6.576 16 N -0.735 5.735 17 C 0.214 3.786 18 H 0.113 0.887 19 C -0.101 4.101 20 C -0.080 4.080 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.096 4.096 25 C -0.111 4.111 26 C 0.099 3.901 27 H 0.082 0.918 28 O -0.556 6.556 29 C -0.086 4.086 30 C -0.153 4.153 31 H 0.280 0.720 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.390 0.610 35 H 0.403 0.597 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.383 0.617 43 H 0.101 0.899 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.697 -18.372 -5.570 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.234 4.234 11 C -0.129 4.129 12 C -0.075 4.075 13 N -0.313 5.313 14 C 0.393 3.607 15 O -0.453 6.453 16 N -0.392 5.392 17 C 0.107 3.893 18 H 0.131 0.869 19 C -0.103 4.103 20 C -0.098 4.098 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.132 4.132 24 C -0.096 4.096 25 C -0.149 4.149 26 C 0.040 3.960 27 H 0.099 0.901 28 O -0.362 6.362 29 C -0.106 4.106 30 C -0.173 4.173 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.223 0.777 35 H 0.238 0.762 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.231 0.769 43 H 0.119 0.881 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.180 -16.886 -4.938 21.397 hybrid contribution 0.367 -0.392 -0.259 0.596 sum -11.813 -17.277 -5.197 21.565 Atomic orbital electron populations 1.69870 1.07479 1.29122 1.35153 1.25920 0.94726 1.01251 0.92484 0.86324 0.80423 0.80768 0.79232 1.19343 1.20390 1.18694 1.19522 0.97707 0.91184 1.40694 0.90483 1.17651 0.91317 0.92051 0.88876 1.20533 1.03779 0.92516 1.06603 1.20023 0.97175 0.97170 0.98482 1.16971 0.98780 0.84416 1.07356 1.42104 1.04810 1.11835 1.72562 1.16073 0.82269 0.83410 0.78925 1.90948 1.64500 1.33093 1.56724 1.44872 1.06667 1.14800 1.72857 1.20280 0.80230 0.98488 0.90304 0.86914 1.20862 0.97014 0.97437 0.94985 1.20779 0.99153 0.98543 0.91350 1.21109 0.96119 0.97631 0.99177 1.21022 0.98162 0.98281 0.96192 1.20505 0.99826 1.00798 0.92025 1.20326 0.96793 0.97670 0.94834 1.21786 0.98339 1.02468 0.92258 1.22745 0.87478 0.87905 0.97914 0.90069 1.86381 1.46279 1.32361 1.71183 1.20428 0.98865 0.91629 0.99713 1.20982 0.98913 0.96636 1.00786 0.90898 0.88714 0.89321 0.77690 0.76184 0.85735 0.85870 0.86041 0.86505 0.89874 0.89039 0.76902 0.88096 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.33 10.94 55.54 0.61 -20.72 16 2 C 0.07 1.91 5.15 -17.34 -0.09 1.82 16 3 Si 0.91 19.12 29.59 -169.99 -5.03 14.09 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.48 9.04 -37.85 -0.34 -12.82 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.10 2.84 5.57 -106.80 -0.59 2.24 16 10 C -0.21 -5.32 9.74 -39.26 -0.38 -5.70 16 11 C -0.11 -2.44 9.90 -39.79 -0.39 -2.84 16 12 C 0.02 0.40 6.27 -83.57 -0.52 -0.12 16 13 N -0.67 -12.42 5.31 -14.10 -0.07 -12.50 16 14 C 0.69 13.02 8.01 -86.92 -0.70 12.32 16 15 O -0.58 -13.28 13.51 5.29 0.07 -13.21 16 16 N -0.74 -10.49 5.05 -58.80 -0.30 -10.79 16 17 C 0.21 2.75 3.15 -68.06 -0.21 2.54 16 18 H 0.11 1.62 7.56 -51.93 -0.39 1.23 16 19 C -0.10 -1.37 5.79 -104.21 -0.60 -1.98 16 20 C -0.08 -1.20 10.00 -39.54 -0.40 -1.59 16 21 C -0.12 -1.54 10.05 -39.63 -0.40 -1.94 16 22 C -0.12 -1.27 10.05 -39.63 -0.40 -1.66 16 23 C -0.11 -1.16 10.04 -39.53 -0.40 -1.56 16 24 C -0.10 -1.05 6.14 -104.21 -0.64 -1.69 16 25 C -0.11 -0.84 6.51 -26.85 -0.17 -1.01 16 26 C 0.10 0.85 4.35 -25.33 -0.11 0.74 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 O -0.56 -4.41 11.90 -35.23 -0.42 -4.83 16 29 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 30 C -0.15 -4.20 8.63 -39.26 -0.34 -4.53 16 31 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 32 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.39 5.81 8.83 -40.82 -0.36 5.45 16 35 H 0.40 5.02 7.34 -40.82 -0.30 4.72 16 36 H 0.12 2.19 7.56 -52.49 -0.40 1.79 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.38 1.28 9.11 45.56 0.41 1.69 16 43 H 0.10 2.60 6.48 -52.49 -0.34 2.26 16 44 H 0.12 3.38 6.18 -52.49 -0.32 3.05 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -33.36 368.49 -11.25 -44.61 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -4.63 Total: 18.13 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -7.03 Total: -20.34 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.24 Total: -44.01 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.35 Total: -18.03 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.36 -11.25 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069557705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.827 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds