Wall clock time and date at job start Tue Mar 31 2020 05:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31590 * 122.23497 * 2 1 4 4 C 1.29939 * 117.14519 * 179.97438 * 3 2 1 5 5 N 1.38886 * 125.37139 * 180.02562 * 4 3 2 6 6 C 1.34781 * 120.00545 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00155 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47197 * 180.02562 * 8 6 5 10 10 N 1.46494 * 109.47106 * 179.97438 * 9 8 6 11 11 C 1.34954 * 126.03475 * 124.99860 * 10 9 8 12 12 C 1.35316 * 107.74368 * 179.73518 * 11 10 9 13 13 C 1.39868 * 107.92272 * 0.02562 * 12 11 10 14 14 N 1.30837 * 108.20148 * 359.97438 * 13 12 11 15 15 S 1.76148 * 109.26659 * 0.26292 * 4 3 2 16 16 C 1.34657 * 122.22966 * 179.97438 * 2 1 3 17 17 S 1.76198 * 125.93106 * 359.97438 * 16 2 1 18 18 C 1.76201 * 100.00224 * 179.97438 * 17 16 2 19 19 H 1.08005 * 119.99960 * 0.02562 * 18 17 16 20 20 C 1.38431 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31801 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99729 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47161 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46789 * 120.00112 * 22 20 18 25 25 H 1.48498 * 109.46783 * 240.00171 * 22 20 18 26 26 H 1.09007 * 109.46938 * 90.03178 * 1 2 3 27 27 H 1.09004 * 109.47758 * 210.02396 * 1 2 3 28 28 H 1.08994 * 109.47264 * 330.02961 * 1 2 3 29 29 H 0.97003 * 119.99858 * 359.97438 * 5 4 3 30 30 H 1.09002 * 109.47181 * 59.99624 * 8 6 5 31 31 H 1.08998 * 109.47063 * 300.00199 * 8 6 5 32 32 H 1.08999 * 109.46666 * 59.99687 * 9 8 6 33 33 H 1.09007 * 109.46675 * 300.00058 * 9 8 6 34 34 H 1.07999 * 126.12426 * 359.75442 * 11 10 9 35 35 H 1.07999 * 126.03437 * 179.97438 * 12 11 10 36 36 H 1.08001 * 125.89990 * 179.97438 * 13 12 11 37 37 H 0.96998 * 120.00213 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4044 2.0545 0.0011 6 6 5.7298 1.8099 0.0021 7 8 6.1355 0.6669 0.0030 8 6 6.7077 2.9566 0.0022 9 6 8.1362 2.4086 0.0028 10 7 9.0868 3.5233 0.0023 11 6 10.0780 3.7218 0.8963 12 6 10.7301 4.8540 0.5444 13 6 10.1161 5.3653 -0.6036 14 7 9.1310 4.5683 -0.9296 15 16 3.9345 -0.7100 -0.0065 16 6 2.2251 -1.1391 0.0005 17 16 1.5696 -2.7746 0.0019 18 6 3.0665 -3.7042 0.0012 19 1 4.0187 -3.1945 0.0006 20 6 3.0220 -5.0878 0.0025 21 7 1.8600 -5.7099 0.0037 22 14 4.6090 -6.0733 0.0024 23 1 5.7681 -5.1450 0.0015 24 1 4.6609 -6.9280 1.2157 25 1 4.6595 -6.9301 -1.2093 26 1 -0.3633 -0.0006 -1.0277 27 1 -0.3635 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5133 29 1 4.0799 2.9687 0.0008 30 1 6.5518 3.5670 0.8917 31 1 6.5530 3.5660 -0.8882 32 1 8.2916 1.7985 -0.8870 33 1 8.2911 1.7989 0.8931 34 1 10.3095 3.0900 1.7410 35 1 11.5749 5.2869 1.0595 36 1 10.4051 6.2629 -1.1301 37 1 1.8289 -6.6793 0.0042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069618924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:32 Heat of formation + Delta-G solvation = 79.693361 kcal Electronic energy + Delta-G solvation = -22769.586468 eV Core-core repulsion = 19187.690661 eV Total energy + Delta-G solvation = -3581.895807 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.061 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42327 -40.24950 -38.60075 -34.97088 -34.58248 -32.85528 -31.11490 -30.45903 -29.72780 -27.14152 -25.81580 -25.48265 -23.14866 -21.41503 -21.24043 -20.73244 -19.66425 -18.20807 -17.91112 -17.39135 -16.51053 -16.30744 -15.87565 -15.35139 -15.13916 -14.72296 -14.59802 -14.25629 -14.03589 -13.62828 -13.35947 -13.22969 -13.03875 -12.74860 -12.62082 -12.14702 -11.90992 -11.77808 -11.40535 -11.30950 -11.12949 -10.93239 -10.88293 -10.64463 -10.27840 -9.99808 -9.73256 -9.58277 -9.11369 -8.90252 -8.79575 -8.69293 -7.84920 -6.63344 -6.54188 -4.31165 1.31779 1.59824 1.83131 2.11098 2.33623 2.50336 2.57534 2.87147 3.05706 3.06036 3.15726 3.33049 3.57680 3.94758 4.13172 4.29302 4.48835 4.60986 4.75346 4.79462 4.94316 5.00301 5.10277 5.17462 5.33072 5.42347 5.49987 5.72302 5.94876 6.08667 6.20821 6.35509 6.40973 6.44926 6.68786 6.90652 7.08323 7.30119 7.41200 7.84039 8.01160 8.47457 8.85313 10.42439 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.002713 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.151001 B =10318.202386 C =12157.646470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.473 5.473 4 C 0.183 3.817 5 N -0.612 5.612 6 C 0.511 3.489 7 O -0.508 6.508 8 C -0.143 4.143 9 C 0.148 3.852 10 N -0.373 5.373 11 C 0.057 3.943 12 C -0.278 4.278 13 C 0.044 3.956 14 N -0.297 5.297 15 S 0.201 5.799 16 C -0.250 4.250 17 S 0.151 5.849 18 C -0.556 4.556 19 H 0.089 0.911 20 C 0.082 3.918 21 N -0.862 5.862 22 Si 0.924 3.076 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.274 1.274 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.416 0.584 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.174 0.826 35 H 0.147 0.853 36 H 0.182 0.818 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.518 17.959 1.924 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.194 5.194 4 C -0.187 4.187 5 N -0.261 5.261 6 C 0.296 3.704 7 O -0.383 6.383 8 C -0.183 4.183 9 C 0.027 3.973 10 N -0.155 5.155 11 C -0.089 4.089 12 C -0.307 4.307 13 C -0.142 4.142 14 N -0.119 5.119 15 S 0.444 5.556 16 C -0.487 4.487 17 S 0.402 5.598 18 C -0.705 4.705 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.495 5.495 22 Si 0.749 3.251 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.253 0.747 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.192 0.808 35 H 0.164 0.836 36 H 0.199 0.801 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.245 15.980 1.099 19.014 hybrid contribution 1.811 0.606 0.625 2.009 sum 12.055 16.586 1.724 20.577 Atomic orbital electron populations 1.20120 0.88018 1.02134 1.01827 1.19031 0.96719 0.84557 1.12096 1.65796 1.02857 1.32450 1.18339 1.23750 0.89884 0.92860 1.12254 1.42339 1.04365 1.08249 1.71131 1.20527 0.82018 0.91021 0.76861 1.90736 1.77076 1.22464 1.47981 1.21774 0.92848 0.97128 1.06585 1.21453 0.85190 0.84652 1.06030 1.48766 1.25283 1.20556 1.20898 1.22648 0.91130 0.99055 0.96081 1.21531 1.07066 0.99816 1.02331 1.23911 0.94066 0.99529 0.96740 1.77348 1.22276 0.98833 1.13416 1.85808 1.01813 0.95338 1.72596 1.28783 1.01259 1.06769 1.11881 1.83093 1.11042 0.84370 1.81304 1.23306 0.93584 0.94040 1.59570 0.89270 1.25035 0.98295 0.96689 0.92912 1.70015 1.24378 1.10294 1.44813 0.85984 0.81297 0.79449 0.78353 1.18785 1.19992 1.19977 0.91849 0.91026 0.91918 0.74683 0.87739 0.86819 0.88362 0.87301 0.80838 0.83560 0.80083 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.00 0.36 -0.70 16 2 C 0.02 0.39 6.73 -83.97 -0.57 -0.18 16 3 N -0.47 -9.32 10.55 -9.79 -0.10 -9.43 16 4 C 0.18 3.41 8.40 -87.21 -0.73 2.68 16 5 N -0.61 -8.34 5.40 -11.78 -0.06 -8.40 16 6 C 0.51 6.46 7.79 -10.98 -0.09 6.38 16 7 O -0.51 -8.31 13.50 5.55 0.07 -8.24 16 8 C -0.14 -1.20 5.89 -27.88 -0.16 -1.37 16 9 C 0.15 1.31 5.80 -4.04 -0.02 1.28 16 10 N -0.37 -3.52 3.68 -61.36 -0.23 -3.75 16 11 C 0.06 0.44 11.45 -17.22 -0.20 0.25 16 12 C -0.28 -2.13 10.80 -40.01 -0.43 -2.56 16 13 C 0.04 0.37 12.03 -17.37 -0.21 0.17 16 14 N -0.30 -3.20 12.42 30.62 0.38 -2.82 16 15 S 0.20 4.31 18.35 -107.50 -1.97 2.34 16 16 C -0.25 -5.69 6.67 29.46 0.20 -5.49 16 17 S 0.15 3.76 20.74 -107.50 -2.23 1.53 16 18 C -0.56 -14.97 9.26 30.80 0.29 -14.69 16 19 H 0.09 2.38 5.97 -52.48 -0.31 2.07 16 20 C 0.08 2.16 5.49 -17.49 -0.10 2.07 16 21 N -0.86 -23.54 13.22 55.47 0.73 -22.80 16 22 Si 0.92 20.44 29.55 -169.99 -5.02 15.42 16 23 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 27 H 0.07 1.24 7.37 -51.93 -0.38 0.85 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.42 4.26 8.82 -40.82 -0.36 3.90 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.11 0.84 8.03 -51.92 -0.42 0.42 16 34 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.28 6.99 8.32 -40.82 -0.34 6.65 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -33.01 352.42 -8.77 -41.78 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.99 Total: 1.24 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.66 Total: -12.18 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.72 Total: -47.20 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.07 Total: -8.24 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 8.07 SS G_CDS: -4.20 Total: 3.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.01 -8.77 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069618924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.471 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds