Wall clock time and date at job start Tue Mar 31 2020 05:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31590 * 122.23497 * 2 1 4 4 C 1.29939 * 117.14519 * 179.97438 * 3 2 1 5 5 N 1.38886 * 125.37139 * 180.02562 * 4 3 2 6 6 C 1.34781 * 120.00545 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00155 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47197 * 180.02562 * 8 6 5 10 10 N 1.46494 * 109.47106 * 179.97438 * 9 8 6 11 11 C 1.34954 * 126.03475 * 124.99860 * 10 9 8 12 12 C 1.35316 * 107.74368 * 179.73518 * 11 10 9 13 13 C 1.39868 * 107.92272 * 0.02562 * 12 11 10 14 14 N 1.30837 * 108.20148 * 359.97438 * 13 12 11 15 15 S 1.76148 * 109.26659 * 0.26292 * 4 3 2 16 16 C 1.34657 * 122.22966 * 179.97438 * 2 1 3 17 17 S 1.76198 * 125.93106 * 359.97438 * 16 2 1 18 18 C 1.76201 * 100.00224 * 179.97438 * 17 16 2 19 19 H 1.08005 * 119.99960 * 0.02562 * 18 17 16 20 20 C 1.38431 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31801 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99729 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47161 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46789 * 120.00112 * 22 20 18 25 25 H 1.48498 * 109.46783 * 240.00171 * 22 20 18 26 26 H 1.09007 * 109.46938 * 90.03178 * 1 2 3 27 27 H 1.09004 * 109.47758 * 210.02396 * 1 2 3 28 28 H 1.08994 * 109.47264 * 330.02961 * 1 2 3 29 29 H 0.97003 * 119.99858 * 359.97438 * 5 4 3 30 30 H 1.09002 * 109.47181 * 59.99624 * 8 6 5 31 31 H 1.08998 * 109.47063 * 300.00199 * 8 6 5 32 32 H 1.08999 * 109.46666 * 59.99687 * 9 8 6 33 33 H 1.09007 * 109.46675 * 300.00058 * 9 8 6 34 34 H 1.07999 * 126.12426 * 359.75442 * 11 10 9 35 35 H 1.07999 * 126.03437 * 179.97438 * 12 11 10 36 36 H 1.08001 * 125.89990 * 179.97438 * 13 12 11 37 37 H 0.96998 * 120.00213 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4044 2.0545 0.0011 6 6 5.7298 1.8099 0.0021 7 8 6.1355 0.6669 0.0030 8 6 6.7077 2.9566 0.0022 9 6 8.1362 2.4086 0.0028 10 7 9.0868 3.5233 0.0023 11 6 10.0780 3.7218 0.8963 12 6 10.7301 4.8540 0.5444 13 6 10.1161 5.3653 -0.6036 14 7 9.1310 4.5683 -0.9296 15 16 3.9345 -0.7100 -0.0065 16 6 2.2251 -1.1391 0.0005 17 16 1.5696 -2.7746 0.0019 18 6 3.0665 -3.7042 0.0012 19 1 4.0187 -3.1945 0.0006 20 6 3.0220 -5.0878 0.0025 21 7 1.8600 -5.7099 0.0037 22 14 4.6090 -6.0733 0.0024 23 1 5.7681 -5.1450 0.0015 24 1 4.6609 -6.9280 1.2157 25 1 4.6595 -6.9301 -1.2093 26 1 -0.3633 -0.0006 -1.0277 27 1 -0.3635 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5133 29 1 4.0799 2.9687 0.0008 30 1 6.5518 3.5670 0.8917 31 1 6.5530 3.5660 -0.8882 32 1 8.2916 1.7985 -0.8870 33 1 8.2911 1.7989 0.8931 34 1 10.3095 3.0900 1.7410 35 1 11.5749 5.2869 1.0595 36 1 10.4051 6.2629 -1.1301 37 1 1.8289 -6.6793 0.0042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069618924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:31 Heat of formation + Delta-G solvation = 58.297921 kcal Electronic energy + Delta-G solvation = -22770.514244 eV Core-core repulsion = 19187.690661 eV Total energy + Delta-G solvation = -3582.823583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.061 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07040 -41.44611 -40.16725 -36.23371 -35.38488 -34.81897 -32.29480 -31.37012 -30.48230 -28.79067 -27.72346 -26.46167 -24.37142 -22.51329 -21.97684 -21.58593 -21.05817 -19.79372 -19.22039 -18.52920 -17.60037 -17.39037 -17.29599 -17.07578 -16.37593 -15.99316 -15.68406 -15.26524 -15.20733 -14.94172 -14.52118 -14.39507 -14.06987 -13.62092 -13.50158 -13.41768 -13.32642 -13.25606 -13.07553 -12.89318 -12.48094 -12.38539 -12.14638 -12.03464 -11.56187 -11.40002 -11.35462 -10.81191 -10.49034 -10.48112 -10.39158 -9.53148 -9.50810 -8.57913 -8.37784 -6.30360 -0.24906 0.20565 0.81376 0.98357 1.13659 1.26186 1.31966 1.33031 1.42668 1.57450 1.82635 1.99839 2.00424 2.14234 2.81418 3.09336 3.36853 3.44789 3.72144 3.82732 4.10417 4.15193 4.28978 4.42890 4.49235 4.63620 4.70760 4.83703 4.83992 4.93765 4.95821 5.04809 5.19809 5.29582 5.46128 5.78346 5.88083 6.02087 6.11667 6.70618 6.79343 6.85842 6.86963 8.49992 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.002713 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.151001 B =10318.202386 C =12157.646470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.037 3.963 3 N -0.484 5.484 4 C 0.225 3.775 5 N -0.603 5.603 6 C 0.517 3.483 7 O -0.539 6.539 8 C -0.123 4.123 9 C 0.148 3.852 10 N -0.382 5.382 11 C 0.053 3.947 12 C -0.285 4.285 13 C 0.038 3.962 14 N -0.336 5.336 15 S 0.163 5.837 16 C -0.282 4.282 17 S 0.098 5.902 18 C -0.574 4.574 19 H 0.082 0.918 20 C 0.034 3.966 21 N -0.896 5.896 22 Si 0.986 3.014 23 H -0.267 1.267 24 H -0.264 1.264 25 H -0.265 1.265 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.437 0.563 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.202 0.798 35 H 0.167 0.833 36 H 0.205 0.795 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.227 20.637 2.462 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.206 5.206 4 C -0.148 4.148 5 N -0.254 5.254 6 C 0.304 3.696 7 O -0.415 6.415 8 C -0.163 4.163 9 C 0.026 3.974 10 N -0.165 5.165 11 C -0.093 4.093 12 C -0.314 4.314 13 C -0.147 4.147 14 N -0.158 5.158 15 S 0.408 5.592 16 C -0.517 4.517 17 S 0.346 5.654 18 C -0.722 4.722 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.530 5.530 22 Si 0.808 3.192 23 H -0.191 1.191 24 H -0.188 1.188 25 H -0.190 1.190 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.278 0.722 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.218 0.782 35 H 0.185 0.815 36 H 0.221 0.779 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.974 18.734 1.637 22.294 hybrid contribution 1.438 0.180 0.459 1.520 sum 13.412 18.915 2.096 23.282 Atomic orbital electron populations 1.20245 0.85775 1.03131 1.03057 1.19682 0.98392 0.84185 1.08235 1.66012 1.02838 1.31404 1.20302 1.24128 0.90214 0.93078 1.07378 1.42552 1.04085 1.08048 1.70750 1.21392 0.81815 0.91640 0.74773 1.90743 1.77363 1.24447 1.48926 1.21721 0.91101 0.95189 1.08324 1.21415 0.85373 0.84696 1.05898 1.48789 1.25892 1.20523 1.21298 1.23216 0.90353 0.99410 0.96327 1.21884 1.07557 0.99803 1.02136 1.24430 0.93422 0.99858 0.97028 1.77298 1.23864 0.99937 1.14725 1.85965 1.02080 0.97868 1.73301 1.28596 1.01809 1.05987 1.15338 1.82929 1.11311 0.86269 1.84924 1.23477 0.93831 0.94788 1.60149 0.90037 1.25899 1.01406 0.97480 0.92525 1.70095 1.26120 1.10699 1.46121 0.85072 0.77215 0.77972 0.78973 1.19073 1.18850 1.18965 0.90390 0.91361 0.89517 0.72167 0.84996 0.85746 0.89934 0.86221 0.78160 0.81511 0.77884 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.10 10.02 71.23 0.71 -1.38 16 2 C 0.04 1.49 6.73 41.77 0.28 1.77 16 3 N -0.48 -18.13 10.55 -184.88 -1.95 -20.08 16 4 C 0.22 7.98 8.40 179.15 1.50 9.49 16 5 N -0.60 -14.74 5.40 -309.57 -1.67 -16.41 16 6 C 0.52 11.84 7.79 87.66 0.68 12.52 16 7 O -0.54 -16.99 13.50 -3.05 -0.04 -17.03 16 8 C -0.12 -1.70 5.89 29.85 0.18 -1.53 16 9 C 0.15 2.30 5.80 86.38 0.50 2.80 16 10 N -0.38 -6.38 3.68 -348.06 -1.28 -7.66 16 11 C 0.05 0.68 11.45 83.54 0.96 1.63 16 12 C -0.28 -3.60 10.80 21.99 0.24 -3.37 16 13 C 0.04 0.57 12.03 85.24 1.02 1.60 16 14 N -0.34 -6.61 12.42 -57.02 -0.71 -7.32 16 15 S 0.16 7.06 18.35 -56.49 -1.04 6.02 16 16 C -0.28 -13.06 6.67 67.00 0.45 -12.61 16 17 S 0.10 5.09 20.74 -56.49 -1.17 3.91 16 18 C -0.57 -32.12 9.26 67.87 0.63 -31.49 16 19 H 0.08 4.54 5.97 -2.91 -0.02 4.52 16 20 C 0.03 1.85 5.49 84.74 0.47 2.32 16 21 N -0.90 -50.44 13.22 21.59 0.29 -50.16 16 22 Si 0.99 42.69 29.55 68.60 2.03 44.71 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.07 2.35 7.37 -2.39 -0.02 2.33 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.44 7.30 8.82 -92.71 -0.82 6.48 16 30 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.12 1.58 8.03 -2.38 -0.02 1.56 16 34 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.28 14.57 8.32 -92.71 -0.77 13.80 16 Total: -1.00 -73.68 352.42 2.38 -71.30 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.31 Total: 10.95 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 7.62 Total: -18.25 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.32 Total: -101.62 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.04 Total: -17.03 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 12.15 SS G_CDS: -2.21 Total: 9.94 kcal Total: -73.68 2.38 -71.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069618924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.599 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds