Wall clock time and date at job start Tue Mar 31 2020 05:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47132 * 113.16029 * 3 2 1 5 5 N 1.46490 * 109.47305 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00061 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00225 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46861 * 89.99972 * 11 9 7 13 13 H 1.48498 * 109.47453 * 210.00313 * 11 9 7 14 14 H 1.48505 * 109.46941 * 330.00240 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 S 1.81404 * 109.47098 * 179.97438 * 17 15 5 19 19 C 1.76192 * 102.99967 * 179.97438 * 18 17 15 20 20 C 1.39006 * 120.07421 * 359.72391 * 19 18 17 21 21 C 1.38070 * 119.94347 * 179.72254 * 20 19 18 22 22 C 1.38306 * 120.09685 * 0.55220 * 21 20 19 23 23 C 1.38396 * 120.14365 * 359.72441 * 22 21 20 24 24 Cl 1.73597 * 119.97495 * 180.02562 * 23 22 21 25 25 C 1.38218 * 120.05477 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.46962 * 353.15948 * 3 2 1 27 27 H 1.08996 * 109.46635 * 233.15718 * 3 2 1 28 28 H 1.09006 * 109.47320 * 59.99615 * 4 3 2 29 29 H 1.09002 * 109.47139 * 299.99841 * 4 3 2 30 30 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 31 31 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 32 32 H 0.96997 * 120.00410 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 34 34 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 35 35 H 1.07997 * 120.02790 * 359.97438 * 20 19 18 36 36 H 1.08008 * 119.95264 * 180.25427 * 21 20 19 37 37 H 1.07997 * 119.92828 * 179.74105 * 22 21 20 38 38 H 1.08003 * 120.04707 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5682 -1.3263 5 7 4.5827 0.5695 -1.3261 6 6 5.3142 1.7366 -0.8271 7 6 5.5648 2.6954 -1.9625 8 1 5.2145 2.4588 -2.9563 9 6 6.2411 3.8746 -1.7324 10 7 6.4593 4.7116 -2.7230 11 14 6.8463 4.2842 -0.0132 12 1 8.2200 3.7502 0.1682 13 1 6.8599 5.7579 0.1689 14 1 5.9399 3.6699 0.9900 15 6 5.2576 -0.5032 -1.7848 16 8 6.4704 -0.5021 -1.7851 17 6 4.5051 -1.7036 -2.2985 18 16 5.6851 -2.9702 -2.8409 19 6 4.6389 -4.2740 -3.3979 20 6 3.2574 -4.1352 -3.3314 21 6 2.4401 -5.1562 -3.7739 22 6 2.9940 -6.3213 -4.2726 23 6 4.3690 -6.4658 -4.3352 24 17 5.0595 -7.9298 -4.9626 25 6 5.1929 -5.4451 -3.8997 26 1 2.9718 -1.0195 0.1224 27 1 2.9710 0.6170 0.8224 28 1 2.7539 1.5885 -1.4487 29 1 2.7547 -0.0481 -2.1487 30 1 4.7246 2.2326 -0.0561 31 1 6.2668 1.4156 -0.4057 32 1 6.9348 5.5414 -2.5611 33 1 3.8784 -2.1072 -1.5032 34 1 3.8786 -1.4072 -3.1397 35 1 2.8237 -3.2278 -2.9377 36 1 1.3666 -5.0469 -3.7261 37 1 2.3521 -7.1199 -4.6141 38 1 6.2659 -5.5579 -3.9490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069771659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:07 Heat of formation + Delta-G solvation = 16.362358 kcal Electronic energy + Delta-G solvation = -23067.038776 eV Core-core repulsion = 19448.060273 eV Total energy + Delta-G solvation = -3618.978503 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.55360 -39.38387 -37.05988 -36.75301 -35.53457 -32.97518 -31.53166 -31.37997 -31.17630 -30.14042 -27.55241 -24.25627 -23.40885 -23.00604 -22.40480 -19.09785 -18.20523 -17.81579 -17.04866 -16.92218 -16.48912 -16.02073 -15.58731 -15.38140 -15.06830 -14.82281 -14.26165 -14.11159 -13.98986 -13.89244 -13.60751 -13.31486 -12.78384 -12.70767 -12.63562 -12.37755 -12.15138 -12.01951 -11.90070 -11.83344 -11.69096 -11.25630 -11.18963 -11.03981 -10.64529 -10.31561 -10.25359 -10.02058 -9.70629 -9.45088 -9.15433 -8.69505 -8.11929 -7.54905 -6.18794 -4.19674 0.73697 0.88080 1.12220 1.84294 2.21434 2.54968 2.64823 2.91614 3.20943 3.21498 3.25691 3.29020 3.38011 3.92974 4.29589 4.45152 4.58573 4.65751 4.71916 4.75006 4.77970 4.93359 5.02333 5.07451 5.14264 5.16274 5.24873 5.41081 5.58249 5.76356 5.86028 5.86248 5.96185 6.33875 6.42707 6.73163 6.98717 7.40765 7.45670 7.81775 8.30717 8.55088 8.83985 9.39678 10.94278 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.002746 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.508535 B =10194.859111 C =11745.540624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.214 3.786 3 C -0.051 4.051 4 C 0.114 3.886 5 N -0.585 5.585 6 C 0.216 3.784 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.075 3.925 10 N -0.893 5.893 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.528 3.472 16 O -0.510 6.510 17 C -0.156 4.156 18 S -0.012 6.012 19 C -0.086 4.086 20 C -0.135 4.135 21 C -0.085 4.085 22 C -0.124 4.124 23 C -0.014 4.014 24 Cl -0.069 7.069 25 C -0.095 4.095 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.266 0.734 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.944 -20.591 0.760 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.012 4.012 5 N -0.316 5.316 6 C 0.096 3.904 7 C -0.574 4.574 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.531 5.531 11 Si 0.702 3.298 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.313 3.687 16 O -0.385 6.385 17 C -0.307 4.307 18 S 0.233 5.767 19 C -0.200 4.200 20 C -0.160 4.160 21 C -0.105 4.105 22 C -0.146 4.146 23 C -0.043 4.043 24 Cl -0.040 7.040 25 C -0.120 4.120 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.557 -20.295 0.754 21.669 hybrid contribution -0.724 0.202 0.652 0.995 sum -8.280 -20.093 1.406 21.777 Atomic orbital electron populations 1.81233 1.12951 1.08921 1.08442 1.29008 0.95008 0.93106 0.93334 1.19889 0.81632 1.05094 1.02678 1.21397 0.81518 1.03980 0.94303 1.47791 1.05075 1.16571 1.62198 1.19800 0.92599 0.82380 0.95643 1.21265 1.37718 1.02449 0.95952 0.90586 1.24848 0.95098 0.95947 0.96940 1.69880 1.41019 1.10794 1.31400 0.86881 0.80229 0.77865 0.84870 1.19799 1.21043 1.18967 1.19282 0.87737 0.82816 0.78915 1.90760 1.13111 1.80719 1.53936 1.24055 1.02746 0.98144 1.05778 1.86465 1.07544 1.07067 1.75575 1.22187 0.97110 0.98814 1.01886 1.21311 0.91993 1.00286 1.02391 1.21033 1.00100 0.92422 0.96913 1.21038 0.92806 0.98982 1.01754 1.20785 0.93382 0.88800 1.01295 1.98379 1.84987 1.35077 1.85534 1.20575 1.00283 0.91151 0.99941 0.87554 0.86409 0.88048 0.90353 0.94651 0.94020 0.92392 0.86872 0.86497 0.85267 0.84793 0.84862 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.76 18.54 42.15 0.78 -4.98 16 2 C 0.21 2.19 15.43 -20.76 -0.32 1.87 16 3 C -0.05 -0.43 6.03 -29.51 -0.18 -0.60 16 4 C 0.11 1.28 5.17 -4.05 -0.02 1.26 16 5 N -0.58 -9.46 2.46 -175.06 -0.43 -9.89 16 6 C 0.22 4.48 4.23 -5.19 -0.02 4.46 16 7 C -0.54 -13.95 9.94 -34.44 -0.34 -14.29 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 11 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 15 C 0.53 8.76 7.69 -10.98 -0.08 8.68 16 16 O -0.51 -10.93 15.44 5.56 0.09 -10.84 16 17 C -0.16 -1.79 3.37 36.01 0.12 -1.67 16 18 S -0.01 -0.16 21.06 -107.50 -2.26 -2.42 16 19 C -0.09 -0.93 6.11 -39.04 -0.24 -1.17 16 20 C -0.14 -1.22 9.36 -39.36 -0.37 -1.59 16 21 C -0.08 -0.67 10.04 -39.62 -0.40 -1.06 16 22 C -0.12 -1.03 9.83 -39.50 -0.39 -1.41 16 23 C -0.01 -0.14 6.32 -39.53 -0.25 -0.39 16 24 Cl -0.07 -0.62 28.95 -51.86 -1.50 -2.12 16 25 C -0.09 -0.99 9.57 -39.33 -0.38 -1.37 16 26 H 0.11 0.65 7.22 -51.93 -0.38 0.27 16 27 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.08 0.70 6.44 -51.93 -0.33 0.36 16 30 H 0.04 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.11 0.91 6.78 -51.92 -0.35 0.56 16 34 H 0.12 1.15 7.02 -51.92 -0.36 0.78 16 35 H 0.13 0.94 5.88 -52.49 -0.31 0.63 16 36 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -33.26 361.26 -8.90 -42.17 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.16 Total: -1.91 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.96 Total: -5.34 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 1.12 Total: -40.31 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.26 Total: -2.42 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.26 -8.90 -42.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069771659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.530 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds