Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00020 * 89.99910 * 10 9 7 12 12 C 1.50694 * 109.47180 * 90.00049 * 11 10 9 13 13 C 1.38232 * 119.61833 * 94.72741 * 12 11 10 14 14 C 1.38626 * 119.15908 * 179.75474 * 13 12 11 15 15 C 1.38668 * 118.42414 * 0.50855 * 14 13 12 16 16 C 1.38182 * 119.15983 * 359.73470 * 15 14 13 17 17 N 1.31856 * 119.61938 * 274.99816 * 12 11 10 18 18 C 1.34777 * 120.00124 * 270.00237 * 10 9 7 19 19 O 1.21280 * 120.00078 * 179.97438 * 18 10 9 20 20 C 1.50704 * 119.99819 * 359.97438 * 18 10 9 21 21 H 1.09000 * 110.66661 * 306.76601 * 20 18 10 22 22 C 1.54713 * 110.74896 * 70.18340 * 20 18 10 23 23 C 1.51647 * 101.92586 * 93.04597 * 22 20 18 24 24 C 1.37747 * 132.16988 * 195.85639 * 23 22 20 25 25 C 1.38354 * 119.97696 * 179.02470 * 24 23 22 26 26 C 1.38281 * 119.76550 * 359.97438 * 25 24 23 27 27 C 1.37930 * 120.35128 * 0.22003 * 26 25 24 28 28 C 1.38881 * 107.04138 * 15.35293 * 23 22 20 29 29 O 1.36130 * 111.23844 * 1.11761 * 28 23 22 30 30 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 32 32 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 33 33 H 1.09000 * 109.47567 * 210.00198 * 11 10 9 34 34 H 1.09002 * 109.47279 * 329.99646 * 11 10 9 35 35 H 1.08002 * 120.41761 * 359.97438 * 13 12 11 36 36 H 1.08011 * 120.78842 * 180.21855 * 14 13 12 37 37 H 1.08004 * 120.42048 * 179.74927 * 15 14 13 38 38 H 1.08009 * 119.61630 * 179.97438 * 16 15 14 39 39 H 1.08997 * 110.93727 * 211.20255 * 22 20 18 40 40 H 1.09001 * 110.93509 * 334.88890 * 22 20 18 41 41 H 1.07999 * 120.00885 * 359.00337 * 24 23 22 42 42 H 1.07993 * 120.11276 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.82182 * 180.19858 * 26 25 24 44 44 H 1.08010 * 119.87808 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.2434 -3.2663 -1.2696 12 6 5.6664 -3.0297 -1.7053 13 6 6.6419 -3.9552 -1.3847 14 6 7.9469 -3.7305 -1.7947 15 6 8.2254 -2.5730 -2.5057 16 6 7.1991 -1.6909 -2.7848 17 7 5.9677 -1.9396 -2.3832 18 6 4.2248 -3.2105 1.1662 19 8 4.6285 -4.3541 1.1663 20 6 3.9746 -2.4996 2.4713 21 1 4.5050 -1.5477 2.4987 22 6 2.4586 -2.2937 2.7015 23 6 2.0955 -3.5216 3.5141 24 6 0.8855 -4.1083 3.8126 25 6 0.8460 -5.2610 4.5767 26 6 2.0239 -5.8198 5.0376 27 6 3.2363 -5.2317 4.7433 28 6 3.2845 -4.0683 3.9789 29 8 4.3558 -3.3273 3.5834 30 1 -0.4850 0.8401 0.0004 31 1 3.8745 -0.6801 -0.8911 32 1 3.8751 -0.6805 0.8889 33 1 4.0764 -4.3355 -1.1391 34 1 3.5622 -2.8824 -2.0291 35 1 6.3898 -4.8438 -0.8251 36 1 8.7292 -4.4379 -1.5617 37 1 9.2318 -2.3637 -2.8373 38 1 7.4078 -0.7868 -3.3377 39 1 2.2711 -1.3819 3.2685 40 1 1.9192 -2.2799 1.7544 41 1 -0.0320 -3.6685 3.4504 42 1 -0.1014 -5.7231 4.8117 43 1 1.9943 -6.7214 5.6315 44 1 4.1516 -5.6745 5.1076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069772744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = 11.358560 kcal Electronic energy + Delta-G solvation = -29474.876880 eV Core-core repulsion = 25551.194469 eV Total energy + Delta-G solvation = -3923.682411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10547 -40.09211 -38.68260 -36.90752 -35.36595 -33.07963 -32.33526 -32.22518 -31.52377 -29.70088 -29.22430 -28.19984 -26.41870 -23.81859 -23.41002 -22.61981 -22.17565 -21.65985 -21.17514 -18.98359 -17.45182 -17.12969 -16.71534 -16.55555 -16.34517 -15.92369 -15.45625 -15.37955 -15.27913 -14.61742 -14.25654 -13.94934 -13.76905 -13.46420 -13.21597 -13.01743 -12.96412 -12.85957 -12.65753 -12.35979 -12.11654 -12.00974 -11.72973 -11.52375 -11.37415 -11.25408 -11.07379 -10.92857 -10.72553 -10.42801 -10.32636 -9.78993 -9.66634 -9.39000 -9.26597 -8.88044 -8.77697 -8.51646 -7.96796 -7.72696 -6.31611 -4.32455 1.17532 1.39651 1.63865 1.70250 3.04142 3.14773 3.21537 3.24797 3.34105 3.74757 4.09669 4.13178 4.20106 4.46422 4.87553 4.89055 4.91740 4.99228 5.02402 5.06409 5.15707 5.25520 5.27535 5.30708 5.57619 5.63062 5.66681 5.69667 5.73363 5.90116 5.94302 6.11658 6.23127 6.25122 6.28089 6.35821 6.36780 6.61006 6.62112 6.75101 6.76189 6.81135 6.86568 7.01952 7.15466 7.33125 7.51909 7.91340 8.16576 8.26556 8.64189 8.72081 9.26628 10.79310 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.005214 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.046018 B = 5368.776729 C = 7876.838003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.085 0.915 9 C 0.203 3.797 10 N -0.577 5.577 11 C 0.168 3.832 12 C 0.118 3.882 13 C -0.150 4.150 14 C -0.082 4.082 15 C -0.179 4.179 16 C 0.093 3.907 17 N -0.468 5.468 18 C 0.506 3.494 19 O -0.548 6.548 20 C 0.071 3.929 21 H 0.132 0.868 22 C -0.118 4.118 23 C -0.156 4.156 24 C -0.070 4.070 25 C -0.153 4.153 26 C -0.097 4.097 27 C -0.139 4.139 28 C 0.108 3.892 29 O -0.285 6.285 30 H 0.268 0.732 31 H 0.045 0.955 32 H 0.030 0.970 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.153 0.847 39 H 0.094 0.906 40 H 0.154 0.846 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -5.750 2.052 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.122 4.122 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.103 0.897 9 C 0.082 3.918 10 N -0.309 5.309 11 C 0.044 3.956 12 C -0.021 4.021 13 C -0.170 4.170 14 C -0.108 4.108 15 C -0.200 4.200 16 C -0.064 4.064 17 N -0.177 5.177 18 C 0.293 3.707 19 O -0.426 6.426 20 C 0.011 3.989 21 H 0.149 0.851 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.089 4.089 25 C -0.172 4.172 26 C -0.115 4.115 27 C -0.158 4.158 28 C 0.063 3.937 29 O -0.198 6.198 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.113 0.887 40 H 0.171 0.829 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.015 -5.600 1.946 10.790 hybrid contribution 1.113 0.613 0.019 1.271 sum 10.128 -4.988 1.965 11.459 Atomic orbital electron populations 1.69877 1.06153 1.27447 1.48392 1.24808 0.94668 0.98808 0.93917 0.86961 0.80379 0.83971 0.79209 1.19656 1.20880 1.18908 1.21233 0.88804 0.94973 1.53157 0.89734 1.19980 0.95975 0.77529 0.98287 1.47825 1.63405 1.16105 1.03540 1.20186 0.89989 0.98666 0.86766 1.21854 0.97435 0.89708 0.93129 1.22158 0.93393 1.01419 1.00062 1.21571 0.96698 0.96860 0.95682 1.22100 1.00712 0.96014 1.01130 1.22756 0.88098 0.98716 0.96845 1.67569 1.21317 1.19139 1.09706 1.20724 0.77469 0.86747 0.85738 1.90618 1.46879 1.17706 1.87427 1.23228 0.98258 0.93151 0.84218 0.85057 1.22411 0.92802 0.95376 1.04831 1.21031 0.93699 0.98419 1.02574 1.20369 0.96663 0.94939 0.96885 1.20965 0.98083 0.97273 1.00835 1.20741 0.91608 0.99415 0.99727 1.20153 0.98680 0.93694 1.03236 1.19600 0.86296 0.91912 0.95880 1.86846 1.34158 1.53456 1.45318 0.92164 0.93737 0.95191 0.88936 0.87993 0.84320 0.85163 0.85206 0.83005 0.88741 0.82886 0.85570 0.85931 0.85762 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.88 13.96 55.43 0.77 -23.10 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 19.09 27.47 -169.99 -4.67 14.42 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 7 C -0.54 -13.08 7.12 -34.44 -0.25 -13.32 16 8 H 0.08 2.26 7.30 -52.49 -0.38 1.87 16 9 C 0.20 4.30 3.84 -5.19 -0.02 4.28 16 10 N -0.58 -11.48 2.44 -176.43 -0.43 -11.91 16 11 C 0.17 3.03 5.71 -5.20 -0.03 3.00 16 12 C 0.12 1.98 6.36 -82.59 -0.53 1.45 16 13 C -0.15 -2.25 9.72 -39.44 -0.38 -2.64 16 14 C -0.08 -1.02 10.18 -39.28 -0.40 -1.41 16 15 C -0.18 -2.07 10.11 -39.44 -0.40 -2.47 16 16 C 0.09 1.25 11.18 -17.55 -0.20 1.06 16 17 N -0.47 -7.86 10.27 -9.47 -0.10 -7.96 16 18 C 0.51 10.37 6.93 -10.98 -0.08 10.29 16 19 O -0.55 -12.11 15.96 -13.48 -0.22 -12.33 16 20 C 0.07 1.35 3.14 -26.98 -0.08 1.27 16 21 H 0.13 2.27 7.08 -51.93 -0.37 1.90 16 22 C -0.12 -2.27 5.88 -26.51 -0.16 -2.43 16 23 C -0.16 -2.92 6.26 -104.10 -0.65 -3.57 16 24 C -0.07 -1.17 10.03 -39.72 -0.40 -1.57 16 25 C -0.15 -2.19 10.07 -39.52 -0.40 -2.59 16 26 C -0.10 -1.35 10.02 -39.68 -0.40 -1.75 16 27 C -0.14 -2.24 10.06 -39.31 -0.40 -2.64 16 28 C 0.11 2.03 6.83 -38.95 -0.27 1.77 16 29 O -0.29 -5.61 10.43 -39.19 -0.41 -6.02 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.04 0.97 7.50 -51.93 -0.39 0.58 16 32 H 0.03 0.62 5.30 -51.93 -0.28 0.35 16 33 H 0.09 1.62 7.32 -51.93 -0.38 1.24 16 34 H 0.10 1.86 8.07 -51.93 -0.42 1.44 16 35 H 0.14 2.10 7.99 -52.49 -0.42 1.68 16 36 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.15 1.61 8.06 -52.48 -0.42 1.18 16 39 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.15 3.34 3.97 -51.93 -0.21 3.13 16 41 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 44 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 367.60 15.07 5.54 5.54 Total: -1.00 -29.83 367.60 -10.02 -39.85 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.39 Total: 10.79 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -5.12 Total: -9.28 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.25 Total: -42.98 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.62 Total: -18.34 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.67 Total: 14.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.83 -10.02 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069772744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.211 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds