Wall clock time and date at job start Tue Mar 31 2020 05:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99743 * 2 1 4 4 H 1.48501 * 109.47110 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47118 * 119.99894 * 3 2 1 6 6 H 1.48499 * 109.47362 * 240.00149 * 3 2 1 7 7 C 1.37868 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00467 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99986 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47245 * 180.02562 * 9 7 2 11 11 C 1.46495 * 120.00064 * 95.90991 * 10 9 7 12 12 C 1.50704 * 109.46979 * 90.00383 * 11 10 9 13 13 C 1.38220 * 119.61969 * 94.73001 * 12 11 10 14 14 C 1.38629 * 119.15781 * 179.71356 * 13 12 11 15 15 C 1.38674 * 118.42226 * 0.54415 * 14 13 12 16 16 C 1.38177 * 119.16357 * 359.73535 * 15 14 13 17 17 N 1.31863 * 119.61167 * 274.99695 * 12 11 10 18 18 C 1.34784 * 119.99947 * 275.91386 * 10 9 7 19 19 O 1.21280 * 120.00015 * 184.64711 * 18 10 9 20 20 C 1.50698 * 119.99775 * 4.64452 * 18 10 9 21 21 H 1.08995 * 110.66941 * 51.23558 * 20 18 10 22 22 C 1.54713 * 110.74847 * 288.01942 * 20 18 10 23 23 C 1.51645 * 101.93013 * 266.96124 * 22 20 18 24 24 C 1.37735 * 132.18183 * 164.60204 * 23 22 20 25 25 C 1.38352 * 119.98097 * 180.40158 * 24 23 22 26 26 C 1.38285 * 119.76858 * 359.94345 * 25 24 23 27 27 C 1.37934 * 120.34629 * 359.88097 * 26 25 24 28 28 C 1.38888 * 107.03687 * 344.62363 * 23 22 20 29 29 O 1.36134 * 111.23771 * 358.91949 * 28 23 22 30 30 H 0.96997 * 120.00401 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47357 * 300.00636 * 9 7 2 32 32 H 1.09000 * 109.47068 * 60.00389 * 9 7 2 33 33 H 1.09002 * 109.47229 * 210.00180 * 11 10 9 34 34 H 1.08998 * 109.47099 * 329.99956 * 11 10 9 35 35 H 1.08003 * 120.42144 * 359.97438 * 13 12 11 36 36 H 1.08007 * 120.78980 * 180.25511 * 14 13 12 37 37 H 1.08005 * 120.41943 * 179.71343 * 15 14 13 38 38 H 1.08001 * 119.62057 * 179.97438 * 16 15 14 39 39 H 1.09002 * 110.93892 * 25.12452 * 22 20 18 40 40 H 1.09003 * 110.93617 * 148.76511 * 22 20 18 41 41 H 1.08003 * 120.00933 * 0.35238 * 24 23 22 42 42 H 1.08000 * 120.11543 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.82817 * 179.85332 * 26 25 24 44 44 H 1.08004 * 119.87882 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.5799 -4.2543 1.2614 12 6 1.6349 -5.3928 1.5478 13 6 1.9764 -6.6765 1.1659 14 6 1.1027 -7.7175 1.4394 15 6 -0.0923 -7.4254 2.0795 16 6 -0.3681 -6.1165 2.4259 17 7 0.4895 -5.1518 2.1550 18 6 2.7325 -4.0467 -1.1616 19 8 3.4545 -5.0211 -1.1721 20 6 2.4271 -3.3212 -2.4467 21 1 2.6178 -2.2534 -2.3403 22 6 0.9657 -3.5759 -2.8859 23 6 1.1196 -4.7672 -3.8115 24 6 0.2085 -5.6637 -4.3245 25 6 0.6348 -6.6823 -5.1580 26 6 1.9765 -6.7950 -5.4736 27 6 2.8902 -5.8962 -4.9639 28 6 2.4687 -4.8661 -4.1265 29 8 3.1872 -3.8722 -3.5356 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 0.8896 32 1 0.6242 -2.5567 -0.8903 33 1 3.5975 -4.6373 1.1847 34 1 2.5261 -3.5252 2.0699 35 1 2.9139 -6.8668 0.6645 36 1 1.3448 -8.7313 1.1564 37 1 -0.7987 -8.2109 2.3040 38 1 -1.2968 -5.8806 2.9243 39 1 0.3395 -3.8263 -2.0295 40 1 0.5642 -2.7153 -3.4211 41 1 -0.8385 -5.5720 -4.0755 42 1 -0.0777 -7.3867 -5.5611 43 1 2.3107 -7.5912 -6.1223 44 1 3.9363 -5.9915 -5.2150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069772747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:22 Heat of formation + Delta-G solvation = 5.210285 kcal Electronic energy + Delta-G solvation = -29532.431278 eV Core-core repulsion = 25608.482258 eV Total energy + Delta-G solvation = -3923.949020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.17460 -40.00904 -38.63418 -36.98940 -35.21436 -33.00244 -32.51958 -32.18955 -31.41862 -29.83805 -29.27243 -27.57891 -26.22747 -24.07595 -23.32212 -22.79900 -22.24796 -21.68060 -21.36915 -19.06030 -17.25058 -16.92359 -16.71963 -16.42437 -16.30899 -15.80924 -15.47982 -15.32911 -15.13269 -14.76201 -14.35007 -14.03409 -13.78501 -13.52084 -13.16846 -13.09508 -12.92452 -12.76184 -12.57093 -12.41549 -12.23359 -11.81382 -11.60530 -11.55107 -11.34652 -11.30611 -11.11958 -10.96987 -10.73718 -10.54403 -10.20773 -9.86177 -9.67841 -9.31121 -9.17759 -8.80080 -8.72008 -8.58074 -7.89032 -7.83616 -6.22632 -4.31361 1.26726 1.46603 1.48922 1.56493 3.07312 3.22663 3.28141 3.31146 3.40420 3.79892 3.94591 4.19511 4.29843 4.55167 4.71433 4.86257 4.95467 5.01040 5.06801 5.10319 5.14831 5.17573 5.23721 5.35879 5.46382 5.51961 5.69604 5.74797 5.77737 5.85780 5.98665 6.04891 6.10989 6.15153 6.22154 6.32862 6.37452 6.46972 6.59151 6.63562 6.66750 6.78067 6.89459 7.14808 7.39389 7.45095 7.71479 7.99064 8.13927 8.28284 8.69077 8.84003 9.36823 10.83758 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.007425 B = 0.005628 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.096399 B = 4973.914349 C = 7550.729914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.227 3.773 10 N -0.581 5.581 11 C 0.168 3.832 12 C 0.118 3.882 13 C -0.149 4.149 14 C -0.083 4.083 15 C -0.180 4.180 16 C 0.094 3.906 17 N -0.464 5.464 18 C 0.505 3.495 19 O -0.554 6.554 20 C 0.071 3.929 21 H 0.158 0.842 22 C -0.094 4.094 23 C -0.171 4.171 24 C -0.071 4.071 25 C -0.157 4.157 26 C -0.091 4.091 27 C -0.139 4.139 28 C 0.121 3.879 29 O -0.280 6.280 30 H 0.267 0.733 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.152 0.848 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -13.165 -3.456 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.108 3.892 10 N -0.313 5.313 11 C 0.044 3.956 12 C -0.021 4.021 13 C -0.170 4.170 14 C -0.109 4.109 15 C -0.200 4.200 16 C -0.064 4.064 17 N -0.173 5.173 18 C 0.292 3.708 19 O -0.433 6.433 20 C 0.012 3.988 21 H 0.175 0.825 22 C -0.132 4.132 23 C -0.172 4.172 24 C -0.089 4.089 25 C -0.175 4.175 26 C -0.109 4.109 27 C -0.158 4.158 28 C 0.075 3.925 29 O -0.192 6.192 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.170 0.830 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.782 -12.554 -3.263 12.995 hybrid contribution 0.309 0.148 -0.015 0.343 sum -0.473 -12.405 -3.278 12.840 Atomic orbital electron populations 1.69913 1.05990 1.27531 1.48885 1.24916 0.94825 0.99210 0.94495 0.86592 0.79610 0.82593 0.78945 1.21121 1.20046 1.19986 1.21453 0.93605 0.90409 1.53079 0.91960 1.19741 0.87565 0.82111 0.99782 1.48151 1.44860 1.34288 1.03976 1.20178 0.95326 0.92241 0.87822 1.21839 0.92797 0.94251 0.93173 1.22130 1.01496 0.93372 0.99962 1.21549 0.93730 0.99455 0.96200 1.22088 0.98162 0.98411 1.01369 1.22755 0.98205 0.88689 0.96708 1.67592 1.02361 1.36111 1.11261 1.20648 0.80258 0.84149 0.85712 1.90605 1.38871 1.27034 1.86833 1.23418 0.90333 1.00543 0.84470 0.82510 1.21796 0.96093 0.96330 0.98931 1.20935 0.93944 0.99116 1.03187 1.20271 0.98832 0.93532 0.96261 1.20932 0.95929 0.99666 1.00973 1.20781 0.92927 0.98058 0.99100 1.20211 1.00380 0.93823 1.01394 1.19626 0.89819 0.89072 0.93968 1.86908 1.43578 1.45945 1.42812 0.92359 0.93075 0.94098 0.89320 0.88333 0.84460 0.85306 0.85288 0.83027 0.88253 0.87846 0.86030 0.85899 0.85595 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 13.29 55.43 0.74 -22.84 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -13.56 8.33 -34.44 -0.29 -13.84 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.23 5.21 4.80 -5.19 -0.02 5.18 16 10 N -0.58 -12.02 2.46 -176.43 -0.43 -12.45 16 11 C 0.17 3.14 5.65 -5.19 -0.03 3.11 16 12 C 0.12 2.09 6.36 -82.58 -0.53 1.56 16 13 C -0.15 -2.36 9.72 -39.44 -0.38 -2.75 16 14 C -0.08 -1.10 10.18 -39.28 -0.40 -1.50 16 15 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 17 N -0.46 -8.24 10.27 -9.47 -0.10 -8.34 16 18 C 0.51 10.60 6.88 -10.98 -0.08 10.53 16 19 O -0.55 -12.40 15.80 -13.44 -0.21 -12.62 16 20 C 0.07 1.40 3.25 -26.98 -0.09 1.31 16 21 H 0.16 3.14 7.09 -51.93 -0.37 2.77 16 22 C -0.09 -1.68 5.48 -26.52 -0.15 -1.82 16 23 C -0.17 -2.92 6.26 -104.10 -0.65 -3.57 16 24 C -0.07 -1.03 10.03 -39.72 -0.40 -1.43 16 25 C -0.16 -1.98 10.07 -39.52 -0.40 -2.38 16 26 C -0.09 -1.15 10.02 -39.68 -0.40 -1.55 16 27 C -0.14 -2.13 10.06 -39.31 -0.40 -2.52 16 28 C 0.12 2.18 6.80 -38.95 -0.26 1.91 16 29 O -0.28 -5.55 10.44 -39.17 -0.41 -5.96 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.05 1.29 8.03 -51.93 -0.42 0.87 16 32 H 0.04 0.95 4.71 -51.93 -0.24 0.71 16 33 H 0.09 1.57 7.39 -51.93 -0.38 1.19 16 34 H 0.10 1.84 8.07 -51.93 -0.42 1.42 16 35 H 0.14 2.20 7.80 -52.48 -0.41 1.79 16 36 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.10 1.84 6.30 -51.93 -0.33 1.52 16 40 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -30.02 373.83 -10.46 -40.48 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.50 Total: 8.71 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -5.16 Total: -7.55 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.21 Total: -43.63 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.62 Total: -18.58 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.02 -10.46 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069772747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.687 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds