Wall clock time and date at job start Tue Mar 31 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21547 * 120.00429 * 0.02562 * 13 12 2 15 15 C 1.47867 * 119.99567 * 179.97438 * 13 12 2 16 16 C 1.39618 * 120.10919 * 359.72918 * 15 13 12 17 17 C 1.37983 * 120.00163 * 179.76081 * 16 15 13 18 18 C 1.38247 * 120.22720 * 0.51310 * 17 16 15 19 19 C 1.38976 * 120.22205 * 359.74034 * 18 17 16 20 20 N 1.39714 * 120.00341 * 179.97438 * 19 18 17 21 21 C 1.47056 * 126.30416 * 335.02057 * 20 19 18 22 22 C 1.54058 * 110.11167 * 208.99190 * 21 20 19 23 23 C 1.55604 * 104.29589 * 314.80102 * 22 21 20 24 24 S 1.67002 * 126.29794 * 154.71257 * 20 19 18 25 25 O 1.42106 * 105.13252 * 291.43413 * 24 20 19 26 26 O 1.42093 * 105.13835 * 61.10623 * 24 20 19 27 27 C 1.38679 * 119.99062 * 359.97438 * 19 18 17 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 33 33 H 1.07994 * 119.99953 * 359.97438 * 16 15 13 34 34 H 1.08000 * 119.88306 * 180.25094 * 17 16 15 35 35 H 1.08004 * 119.88446 * 179.76093 * 18 17 16 36 36 H 1.09001 * 109.35974 * 329.17509 * 21 20 19 37 37 H 1.09001 * 109.35802 * 88.81149 * 21 20 19 38 38 H 1.09005 * 110.46885 * 73.50228 * 22 21 20 39 39 H 1.09001 * 110.47544 * 195.96446 * 22 21 20 40 40 H 1.09002 * 111.17056 * 155.78354 * 23 22 21 41 41 H 1.09003 * 111.16431 * 280.04950 * 23 22 21 42 42 H 1.08006 * 120.11525 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6394 -0.7155 3.5645 16 6 2.9663 -2.0716 3.5059 17 6 3.4302 -2.7189 4.6327 18 6 3.5632 -2.0317 5.8249 19 6 3.2356 -0.6829 5.8952 20 7 3.3713 0.0070 7.1025 21 6 3.3382 -0.5812 8.4499 22 6 2.8053 0.4483 9.4645 23 6 3.5611 1.7620 9.1118 24 16 3.6080 1.6505 7.2808 25 8 4.9162 1.8932 6.7818 26 8 2.4612 2.2557 6.6999 27 6 2.7741 -0.0219 4.7668 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.7092 1.1618 -3.4843 32 1 2.2490 -1.6318 1.1525 33 1 2.8592 -2.6132 2.5777 34 1 3.6863 -3.7670 4.5841 35 1 3.9232 -2.5447 6.7045 36 1 2.6873 -1.4555 8.4466 37 1 4.3454 -0.8834 8.7370 38 1 1.7304 0.5825 9.3425 39 1 3.0362 0.1351 10.4826 40 1 3.0022 2.6381 9.4408 41 1 4.5682 1.7607 9.5287 42 1 2.5193 1.0263 4.8191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069814711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:04 Heat of formation + Delta-G solvation = -65.800175 kcal Electronic energy + Delta-G solvation = -26920.864517 eV Core-core repulsion = 22993.447110 eV Total energy + Delta-G solvation = -3927.417408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.97401 -38.53348 -37.37053 -37.18368 -36.17249 -34.77094 -33.77071 -32.34780 -31.09904 -29.69326 -28.43907 -26.79927 -25.21918 -24.13110 -22.88044 -22.46050 -20.79330 -19.86021 -19.11573 -18.39084 -17.57396 -16.95051 -16.39848 -16.10935 -15.76077 -15.54604 -15.14322 -14.98074 -14.68300 -14.40424 -14.11313 -14.06891 -13.89668 -13.66864 -13.08841 -12.99905 -12.66751 -12.38588 -12.34284 -12.24191 -12.08895 -11.91092 -11.78265 -11.63185 -11.20754 -11.06526 -10.93340 -10.86980 -10.70443 -10.54463 -10.29098 -10.18858 -9.10549 -9.01266 -8.93522 -8.51043 -8.22036 -7.86168 -6.07917 -4.17386 -0.27631 1.00842 1.33969 1.97201 3.18259 3.24190 3.28926 3.33988 3.35309 3.37824 3.78430 3.93572 4.04033 4.18021 4.30568 4.37698 4.46596 4.75239 4.83206 4.89488 4.93380 4.98323 5.12333 5.17835 5.20560 5.24213 5.28032 5.48109 5.64604 5.92584 6.18429 6.34708 6.39993 6.49273 6.88375 6.93548 7.02905 7.20014 7.49436 7.60691 7.73720 7.96433 8.19197 8.68719 8.81588 9.14012 9.49718 10.98143 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.002622 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.705993 B =10675.229268 C =11267.945832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.539 3.461 14 O -0.543 6.543 15 C -0.081 4.081 16 C -0.113 4.113 17 C -0.095 4.095 18 C -0.137 4.137 19 C 0.195 3.805 20 N -0.933 5.933 21 C 0.071 3.929 22 C -0.124 4.124 23 C -0.599 4.599 24 S 2.559 3.441 25 O -0.940 6.940 26 O -0.934 6.934 27 C -0.121 4.121 28 H 0.016 0.984 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -6.646 27.809 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.348 5.348 13 C 0.323 3.677 14 O -0.422 6.422 15 C -0.085 4.085 16 C -0.133 4.133 17 C -0.114 4.114 18 C -0.160 4.160 19 C 0.100 3.900 20 N -0.761 5.761 21 C -0.054 4.054 22 C -0.163 4.163 23 C -0.729 4.729 24 S 2.656 3.344 25 O -0.929 6.929 26 O -0.923 6.923 27 C -0.143 4.143 28 H 0.035 0.965 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.124 -4.949 26.907 27.834 hybrid contribution 0.372 -1.243 -0.126 1.303 sum 5.496 -6.192 26.781 28.031 Atomic orbital electron populations 1.22081 0.98313 0.99175 1.01030 1.18796 0.91138 0.94118 0.79748 0.93148 1.21171 1.32542 1.13276 0.90290 0.92074 1.24890 0.94813 0.94964 0.99041 1.69897 1.35783 1.22375 1.23987 0.86493 0.79168 0.79534 0.81782 1.20170 1.21150 1.20170 1.46476 1.64478 1.13551 1.10269 1.18188 0.79238 0.86877 0.83366 1.90755 1.50973 1.15540 1.84959 1.20093 1.00170 0.94039 0.94159 1.21379 0.99161 0.93539 0.99220 1.20905 0.98700 0.99928 0.91862 1.20907 1.03252 0.92828 0.98980 1.16917 0.98084 0.91946 0.83017 1.54976 1.85496 1.27397 1.08249 1.22247 1.03678 0.99436 0.80041 1.22652 1.01457 0.90683 1.01525 1.30899 1.10483 1.06637 1.24918 1.07034 0.75578 0.73358 0.78400 1.93661 1.39469 1.82788 1.77010 1.93688 1.50488 1.74447 1.73707 1.21253 0.99718 1.02124 0.91160 0.96517 0.89061 0.95415 0.92506 0.77774 0.84921 0.85011 0.85531 0.88006 0.89799 0.88308 0.86632 0.83604 0.83794 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 2 C 0.26 6.98 2.56 -69.08 -0.18 6.80 16 3 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 4 C -0.53 -14.47 8.73 -34.44 -0.30 -14.77 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.70 -15.50 5.02 -55.87 -0.28 -15.78 16 13 C 0.54 12.08 7.74 -12.32 -0.10 11.98 16 14 O -0.54 -14.45 16.01 5.32 0.09 -14.36 16 15 C -0.08 -1.45 5.87 -104.99 -0.62 -2.06 16 16 C -0.11 -1.56 9.54 -39.16 -0.37 -1.94 16 17 C -0.10 -1.03 10.02 -39.67 -0.40 -1.43 16 18 C -0.14 -1.47 9.48 -39.30 -0.37 -1.84 16 19 C 0.19 2.62 6.48 -83.83 -0.54 2.08 16 20 N -0.93 -9.77 3.47 -57.73 -0.20 -9.97 16 21 C 0.07 0.36 5.96 -3.19 -0.02 0.34 16 22 C -0.12 -0.39 6.80 -24.79 -0.17 -0.56 16 23 C -0.60 -2.68 7.51 38.54 0.29 -2.39 16 24 S 2.56 28.65 5.67 -107.50 -0.61 28.04 16 25 O -0.94 -14.01 18.14 -57.41 -1.04 -15.05 16 26 O -0.93 -14.37 16.35 -57.41 -0.94 -15.30 16 27 C -0.12 -2.11 8.99 -38.97 -0.35 -2.46 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.39 7.29 6.57 -40.82 -0.27 7.03 16 33 H 0.13 1.61 6.40 -52.49 -0.34 1.28 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 0.92 7.60 -52.48 -0.40 0.52 16 36 H 0.10 0.39 8.06 -51.93 -0.42 -0.03 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.12 0.05 8.14 -51.93 -0.42 -0.38 16 40 H 0.15 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.15 2.90 5.71 -52.48 -0.30 2.60 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -38.80 360.16 -10.18 -48.97 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.35 Total: 4.85 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.87 Total: -7.99 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.15 Total: -50.51 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.89 Total: -44.71 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 28.65 SS G_CDS: -0.61 Total: 28.04 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.80 -10.18 -48.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069814711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.826 kcal (2) G-P(sol) polarization free energy of solvation -38.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds