Wall clock time and date at job start Tue Mar 31 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47585 * 2 1 4 4 C 1.50702 * 109.47046 * 240.00110 * 2 1 3 5 5 H 1.07996 * 120.00374 * 245.35449 * 4 2 1 6 6 C 1.37876 * 119.99749 * 65.34843 * 4 2 1 7 7 N 1.31518 * 120.00343 * 5.14958 * 6 4 2 8 8 Si 1.86807 * 120.00265 * 185.14783 * 6 4 2 9 9 H 1.48494 * 109.47145 * 84.99953 * 8 6 4 10 10 H 1.48497 * 109.47300 * 205.00262 * 8 6 4 11 11 H 1.48503 * 109.46685 * 325.00509 * 8 6 4 12 12 N 1.46504 * 109.47166 * 120.00872 * 2 1 3 13 13 C 1.34778 * 119.99200 * 274.99549 * 12 2 1 14 14 O 1.21545 * 120.00802 * 359.97438 * 13 12 2 15 15 C 1.47848 * 119.99451 * 180.02562 * 13 12 2 16 16 C 1.39579 * 120.14742 * 359.72153 * 15 13 12 17 17 C 1.37958 * 119.85294 * 179.74295 * 16 15 13 18 18 C 1.38361 * 120.14608 * 0.53588 * 17 16 15 19 19 S 1.76194 * 119.85354 * 179.71421 * 18 17 16 20 20 O 1.42099 * 106.40314 * 23.56786 * 19 18 17 21 21 O 1.42100 * 106.40240 * 156.48007 * 19 18 17 22 22 N 1.65591 * 107.22242 * 270.02168 * 19 18 17 23 23 C 1.46506 * 119.99759 * 64.99975 * 22 19 18 24 24 C 1.53002 * 117.49806 * 213.62058 * 23 22 19 25 25 C 1.53002 * 60.00029 * 252.51051 * 24 23 22 26 26 C 1.38364 * 120.28889 * 359.74083 * 18 17 16 27 27 C 1.37954 * 120.14488 * 359.97438 * 26 18 17 28 28 H 1.08998 * 109.46491 * 294.97171 * 1 2 3 29 29 H 1.08996 * 109.47139 * 54.96852 * 1 2 3 30 30 H 1.08998 * 109.47372 * 174.97377 * 1 2 3 31 31 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 32 32 H 0.96996 * 120.00602 * 94.99213 * 12 2 1 33 33 H 1.08006 * 120.07060 * 0.02562 * 16 15 13 34 34 H 1.07999 * 119.92569 * 180.27506 * 17 16 15 35 35 H 0.96999 * 120.00890 * 245.00339 * 22 19 18 36 36 H 1.09000 * 115.54888 * 359.33430 * 23 22 19 37 37 H 1.08994 * 117.50131 * 0.02562 * 24 23 22 38 38 H 1.09006 * 117.49625 * 145.02308 * 24 23 22 39 39 H 1.08996 * 117.50191 * 252.51132 * 25 24 23 40 40 H 1.09006 * 117.51357 * 107.48596 * 25 24 23 41 41 H 1.08000 * 119.91894 * 179.97438 * 26 18 17 42 42 H 1.08007 * 120.06869 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5800 -1.6361 -1.1339 6 6 1.7925 -0.1785 -2.4797 7 7 1.2153 0.9977 -2.5939 8 14 2.2876 -1.1284 -4.0102 9 1 1.2109 -2.0864 -4.3680 10 1 2.5006 -0.1809 -5.1336 11 1 3.5448 -1.8730 -3.7454 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8586 1.1610 2.4117 15 6 2.6405 -0.7154 3.5640 16 6 2.9683 -2.0709 3.5060 17 6 3.4331 -2.7139 4.6346 18 6 3.5642 -2.0209 5.8249 19 16 4.1515 -2.8516 7.2634 20 8 4.8997 -3.9689 6.8042 21 8 4.6935 -1.8493 8.1124 22 7 2.8294 -3.4652 8.0494 23 6 2.0196 -4.5087 7.4156 24 6 0.5154 -4.5034 7.6959 25 6 1.4069 -5.5767 8.3240 26 6 3.2355 -0.6784 5.8906 27 6 2.7751 -0.0221 4.7679 28 1 -0.3632 0.4339 0.9316 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3634 -1.0237 -0.0900 31 1 1.0469 1.3721 -3.4728 32 1 2.2490 -1.6320 1.1525 33 1 2.8625 -2.6140 2.5785 34 1 3.6913 -3.7617 4.5899 35 1 2.5910 -3.1337 8.9292 36 1 2.3459 -4.8192 6.4231 37 1 0.1283 -3.7234 8.3514 38 1 -0.1482 -4.8104 6.8875 39 1 1.3297 -6.5895 7.9288 40 1 1.6065 -5.5030 9.3931 41 1 3.3397 -0.1433 6.8229 42 1 2.5185 1.0257 4.8207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069841167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:17 Heat of formation + Delta-G solvation = -59.830953 kcal Electronic energy + Delta-G solvation = -26357.514634 eV Core-core repulsion = 22430.356071 eV Total energy + Delta-G solvation = -3927.158563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.98177 -38.25320 -38.10996 -37.47171 -36.15760 -34.96846 -32.72426 -32.56754 -31.58302 -31.22383 -28.91320 -25.33990 -24.49809 -23.04111 -22.79373 -22.46308 -21.33636 -20.14635 -19.63957 -18.60716 -18.07125 -17.44887 -16.85789 -16.07818 -15.90427 -15.36776 -15.10408 -15.05432 -14.65346 -14.45129 -14.30188 -13.82746 -13.66681 -13.37288 -13.01222 -12.85747 -12.59536 -12.49707 -12.46823 -12.36487 -12.29779 -11.96304 -11.86703 -11.42693 -11.17313 -11.14866 -11.08591 -10.88180 -10.86366 -10.44485 -10.35944 -9.59293 -9.46756 -9.34800 -9.26246 -9.17276 -8.63749 -8.09736 -6.21550 -4.29375 -0.00907 0.36404 1.11166 2.51133 2.91784 3.20360 3.27213 3.28609 3.32674 3.49509 3.79037 3.88404 3.99544 4.29622 4.33602 4.42349 4.49871 4.50859 4.63793 4.66522 5.00705 5.11519 5.12978 5.23547 5.24598 5.41406 5.47356 5.66951 5.67616 5.72884 5.82809 5.92335 6.17431 6.45758 6.56467 6.68722 6.77657 6.97937 7.26133 7.41702 7.57978 7.73715 7.96365 8.46730 8.66248 8.89800 9.37413 10.86796 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.002461 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.971049 B =11373.051271 C =11652.408171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.262 3.738 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.696 5.696 13 C 0.533 3.467 14 O -0.541 6.541 15 C -0.059 4.059 16 C -0.111 4.111 17 C -0.029 4.029 18 C -0.668 4.668 19 S 2.701 3.299 20 O -0.952 6.952 21 O -0.956 6.956 22 N -1.088 6.088 23 C 0.081 3.919 24 C -0.188 4.188 25 C -0.185 4.185 26 C -0.026 4.026 27 C -0.088 4.088 28 H 0.018 0.982 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.266 0.734 32 H 0.389 0.611 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.419 0.581 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.144 0.856 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -12.106 21.439 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.075 0.925 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.729 3.271 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.343 5.343 13 C 0.318 3.682 14 O -0.420 6.420 15 C -0.063 4.063 16 C -0.130 4.130 17 C -0.049 4.049 18 C -0.756 4.756 19 S 2.791 3.209 20 O -0.942 6.942 21 O -0.946 6.946 22 N -0.844 5.844 23 C -0.027 4.027 24 C -0.228 4.228 25 C -0.225 4.225 26 C -0.046 4.046 27 C -0.108 4.108 28 H 0.037 0.963 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.254 0.746 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.162 0.838 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.811 -11.240 21.342 24.135 hybrid contribution -0.384 -0.487 -1.107 1.269 sum 0.427 -11.727 20.235 23.391 Atomic orbital electron populations 1.22023 0.98437 0.99723 0.99837 1.18853 0.90865 0.94520 0.79709 0.92530 1.21143 1.37290 1.08931 0.90357 0.91997 1.24893 0.94804 0.94718 0.99111 1.69949 1.41756 1.15792 1.24349 0.86464 0.78952 0.79616 0.82098 1.20382 1.21062 1.19836 1.46554 1.63800 1.13645 1.10339 1.18232 0.79574 0.86972 0.83441 1.90755 1.51019 1.15350 1.84922 1.20777 0.96226 0.94115 0.95160 1.21540 0.98394 0.93937 0.99177 1.20829 0.93149 0.99860 0.91014 1.30909 1.19448 1.06734 1.18478 1.01722 0.72481 0.73397 0.73313 1.93605 1.67167 1.51471 1.81952 1.93607 1.75615 1.59725 1.65688 1.55148 1.48409 1.50571 1.30266 1.21353 0.91515 0.91995 0.97808 1.23434 0.93188 1.01944 1.04195 1.23385 1.03656 0.95641 0.99788 1.20862 0.92435 0.91957 0.99313 1.21448 0.97013 1.01197 0.91096 0.96307 0.90445 0.94966 0.92429 0.77698 0.84238 0.83884 0.74627 0.84449 0.88177 0.87665 0.87707 0.88257 0.83847 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.26 37.16 0.34 -3.02 16 2 C 0.26 6.46 2.43 -69.08 -0.17 6.29 16 3 H 0.06 1.63 7.56 -51.93 -0.39 1.24 16 4 C -0.54 -13.89 8.67 -34.44 -0.30 -14.19 16 5 H 0.06 1.51 7.72 -52.49 -0.41 1.11 16 6 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 7 N -0.88 -24.54 11.98 55.43 0.66 -23.88 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.70 -13.98 5.02 -55.88 -0.28 -14.26 16 13 C 0.53 10.47 7.74 -12.33 -0.10 10.38 16 14 O -0.54 -12.62 16.01 5.33 0.09 -12.54 16 15 C -0.06 -0.90 5.87 -104.97 -0.62 -1.52 16 16 C -0.11 -1.36 9.54 -39.18 -0.37 -1.74 16 17 C -0.03 -0.31 9.50 -39.64 -0.38 -0.69 16 18 C -0.67 -7.11 5.95 -39.49 -0.24 -7.35 16 19 S 2.70 26.09 5.71 -107.50 -0.61 25.47 16 20 O -0.95 -11.57 17.03 -57.18 -0.97 -12.54 16 21 O -0.96 -11.58 17.27 -57.18 -0.99 -12.57 16 22 N -1.09 -7.21 6.04 -4.89 -0.03 -7.24 16 23 C 0.08 0.50 6.47 -67.92 -0.44 0.07 16 24 C -0.19 -0.99 10.46 -26.73 -0.28 -1.27 16 25 C -0.19 -0.93 10.46 -26.73 -0.28 -1.21 16 26 C -0.03 -0.30 9.50 -39.64 -0.38 -0.67 16 27 C -0.09 -1.20 9.59 -39.19 -0.38 -1.57 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.99 6.84 -51.93 -0.36 1.64 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 6.59 6.56 -40.82 -0.27 6.32 16 33 H 0.14 1.47 6.41 -52.48 -0.34 1.13 16 34 H 0.14 1.17 7.60 -52.49 -0.40 0.77 16 35 H 0.42 1.96 8.96 -34.47 -0.31 1.65 16 36 H 0.14 0.76 8.11 -51.93 -0.42 0.34 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.14 1.31 7.60 -52.49 -0.40 0.91 16 42 H 0.15 1.97 7.65 -52.48 -0.40 1.57 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -34.51 372.83 -10.56 -45.07 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.36 Total: 6.43 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -3.67 Total: -14.77 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.35 Total: -45.38 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.88 Total: -37.64 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 26.09 SS G_CDS: -0.61 Total: 25.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.51 -10.56 -45.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069841167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.756 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds