Wall clock time and date at job start Tue Mar 31 2020 07:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99641 * 2 1 4 4 C 1.52996 * 109.46993 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47217 * 65.00212 * 4 3 2 6 6 C 1.46501 * 119.99954 * 275.00085 * 5 4 3 7 7 C 1.50697 * 109.47084 * 274.99965 * 6 5 4 8 8 H 1.08002 * 120.00228 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00020 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99883 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99913 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47377 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46992 * 119.99740 * 11 9 7 14 14 H 1.48500 * 109.47196 * 240.00153 * 11 9 7 15 15 S 1.65600 * 119.99795 * 94.99766 * 5 4 3 16 16 O 1.42097 * 106.40408 * 336.46171 * 15 5 4 17 17 O 1.42099 * 106.39710 * 203.53935 * 15 5 4 18 18 C 1.76203 * 107.21504 * 90.00174 * 15 5 4 19 19 C 1.38256 * 120.02842 * 90.00227 * 18 15 5 20 20 C 1.38105 * 119.93154 * 180.02562 * 19 18 15 21 21 C 1.38497 * 120.21438 * 359.97035 * 20 19 18 22 22 C 1.38216 * 119.85394 * 0.02955 * 21 20 19 23 23 C 1.38096 * 120.03465 * 269.99408 * 18 15 5 24 24 C 1.51362 * 109.76055 * 180.02562 * 22 21 20 25 25 C 1.54347 * 105.17257 * 342.81694 * 24 22 21 26 26 C 1.51680 * 130.30808 * 179.85164 * 21 20 19 27 27 H 1.09000 * 109.46586 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47129 * 299.99368 * 1 2 3 29 29 H 1.08995 * 109.47073 * 59.99738 * 1 2 3 30 30 H 1.09003 * 109.47072 * 60.00617 * 3 2 1 31 31 H 1.08992 * 109.47431 * 300.00180 * 3 2 1 32 32 H 1.09001 * 109.47315 * 305.00586 * 4 3 2 33 33 H 1.08999 * 109.47186 * 185.00182 * 4 3 2 34 34 H 1.09004 * 109.47226 * 34.99698 * 6 5 4 35 35 H 1.08989 * 109.47248 * 154.99386 * 6 5 4 36 36 H 0.96996 * 120.00142 * 179.97438 * 10 9 7 37 37 H 1.08002 * 120.03364 * 359.97438 * 19 18 15 38 38 H 1.08004 * 119.89275 * 179.97438 * 20 19 18 39 39 H 1.08005 * 119.89126 * 0.02922 * 23 18 15 40 40 H 1.09002 * 110.30308 * 223.88922 * 24 22 21 41 41 H 1.09003 * 110.38787 * 101.77978 * 24 22 21 42 42 H 1.09002 * 110.82432 * 144.56982 * 25 24 22 43 43 H 1.09005 * 110.82182 * 267.92439 * 25 24 22 44 44 H 1.08998 * 110.25544 * 78.26854 * 26 21 20 45 45 H 1.09000 * 110.49386 * 316.01666 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0016 -0.8953 -1.3759 7 6 5.3001 -1.4247 -0.8240 8 1 6.0337 -0.7422 -0.4209 9 6 5.5521 -2.7803 -0.8346 10 7 4.6590 -3.6113 -1.3259 11 14 7.1620 -3.4363 -0.1512 12 1 7.9896 -2.3048 0.3387 13 1 6.8806 -4.3658 0.9724 14 1 7.8954 -4.1600 -1.2205 15 16 4.4473 1.5124 -2.5244 16 8 3.8195 2.7736 -2.3391 17 8 4.2787 0.7246 -3.6949 18 6 6.1793 1.7893 -2.3563 19 6 7.0793 0.9168 -2.9396 20 6 8.4364 1.1354 -2.8062 21 6 8.8994 2.2267 -2.0900 22 6 7.9997 3.0989 -1.5068 23 6 6.6391 2.8780 -1.6419 24 6 8.7479 4.2004 -0.7870 25 6 10.1879 3.6698 -0.6225 26 6 10.3176 2.6794 -1.7990 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6886 1.8464 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5686 0.8426 33 1 3.9784 2.1766 0.0902 34 1 3.1685 -1.3221 -0.8172 35 1 3.9138 -1.1716 -2.4265 36 1 4.8364 -4.5648 -1.3337 37 1 6.7214 0.0647 -3.4985 38 1 9.1389 0.4533 -3.2618 39 1 5.9354 3.5589 -1.1861 40 1 8.2997 4.3869 0.1889 41 1 8.7468 5.1127 -1.3835 42 1 10.9121 4.4792 -0.7157 43 1 10.3048 3.1555 0.3314 44 1 10.7400 3.1804 -2.6700 45 1 10.9379 1.8302 -1.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069842018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:29 Heat of formation + Delta-G solvation = -96.198331 kcal Electronic energy + Delta-G solvation = -28551.888581 eV Core-core repulsion = 24661.267442 eV Total energy + Delta-G solvation = -3890.621138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.94262 -37.70510 -36.63642 -35.65567 -35.30990 -35.17863 -32.52938 -31.40436 -29.47831 -29.06198 -27.36768 -26.71934 -25.61927 -22.88382 -22.79512 -21.75375 -21.27803 -20.86081 -18.20323 -17.11203 -16.93598 -16.29842 -16.09179 -15.75816 -15.70128 -15.44330 -15.09649 -14.82706 -14.46108 -14.39016 -13.84191 -13.41936 -13.17801 -12.98215 -12.74221 -12.61760 -12.29584 -12.19679 -11.98921 -11.88155 -11.64723 -11.62573 -11.40940 -11.31711 -11.19572 -11.05554 -11.03019 -10.85608 -10.82133 -10.65873 -10.34079 -10.32435 -9.98008 -9.68135 -9.24951 -8.83582 -8.50960 -8.39858 -7.95999 -6.02296 -4.07351 0.96692 1.24307 1.56123 3.27504 3.35768 3.38702 3.52125 3.84840 4.20840 4.33247 4.41276 4.43267 4.45304 4.85841 4.89579 5.06697 5.14508 5.28420 5.32501 5.41453 5.46578 5.53375 5.56162 5.58357 5.59608 5.67179 5.68498 5.70739 5.72787 5.81390 5.85950 5.97696 6.01440 6.08067 6.23784 6.33853 6.41555 6.46495 6.58595 6.65385 7.10549 7.50922 7.56277 7.58719 7.80710 7.96741 8.26402 8.98012 9.57364 11.05731 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009325 B = 0.005411 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.832592 B = 5173.860675 C = 6968.195595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.134 3.866 5 N -0.973 5.973 6 C 0.243 3.757 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.888 5.888 11 Si 0.887 3.113 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 S 2.687 3.313 16 O -0.982 6.982 17 O -0.956 6.956 18 C -0.663 4.663 19 C 0.004 3.996 20 C -0.131 4.131 21 C -0.053 4.053 22 C -0.130 4.130 23 C -0.012 4.012 24 C -0.079 4.079 25 C -0.121 4.121 26 C -0.087 4.087 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.262 0.738 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 13.742 2.335 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.007 3.993 5 N -0.812 5.812 6 C 0.122 3.878 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.715 3.285 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 S 2.777 3.223 16 O -0.972 6.972 17 O -0.947 6.947 18 C -0.748 4.748 19 C -0.015 4.015 20 C -0.150 4.150 21 C -0.053 4.053 22 C -0.131 4.131 23 C -0.031 4.031 24 C -0.116 4.116 25 C -0.158 4.158 26 C -0.124 4.124 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.164 0.836 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.092 13.678 1.643 14.372 hybrid contribution 1.406 -0.475 0.769 1.671 sum 5.498 13.204 2.412 14.504 Atomic orbital electron populations 1.22705 0.82347 1.02459 0.99115 1.88105 1.18453 1.27019 1.95160 1.23100 0.95228 0.85221 0.99991 1.21125 0.91442 0.97857 0.88873 1.57320 1.77791 1.19218 1.26868 1.19366 0.98224 0.71079 0.99156 1.21620 1.02829 0.92184 1.40962 0.92148 1.24894 0.96590 0.96876 0.95321 1.69949 1.34252 1.03083 1.45327 0.86624 0.84053 0.79029 0.78838 1.19791 1.20992 1.20956 1.01999 0.73726 0.72635 0.73930 1.93493 1.74193 1.42865 1.86670 1.93550 1.85326 1.69843 1.45950 1.31137 1.27362 1.04593 1.11701 1.20890 0.92339 0.95588 0.92676 1.20732 0.95734 0.97575 1.00929 1.20885 0.95835 0.93980 0.94623 1.20556 0.93338 0.98025 1.01150 1.20247 0.94760 0.94311 0.93801 1.21007 0.94223 0.96283 1.00052 1.22295 0.96355 0.98590 0.98571 1.21196 0.93189 0.99265 0.98752 0.89842 0.94799 0.94579 0.93059 0.93112 0.88970 0.90173 0.92089 0.93333 0.92798 0.83632 0.85609 0.85083 0.90617 0.90346 0.90585 0.90839 0.89942 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.78 9.02 -35.23 -0.32 -7.10 16 3 C 0.04 0.70 6.28 37.16 0.23 0.94 16 4 C 0.13 2.34 5.79 -4.04 -0.02 2.31 16 5 N -0.97 -20.35 2.76 -115.66 -0.32 -20.67 16 6 C 0.24 6.12 5.27 -5.19 -0.03 6.10 16 7 C -0.54 -14.23 9.38 -34.44 -0.32 -14.55 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 11 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 S 2.69 54.65 5.65 -107.50 -0.61 54.04 16 16 O -0.98 -19.57 16.25 -57.17 -0.93 -20.50 16 17 O -0.96 -22.32 15.84 -57.17 -0.91 -23.23 16 18 C -0.66 -12.36 5.97 -39.63 -0.24 -12.60 16 19 C 0.00 0.08 9.52 -39.62 -0.38 -0.30 16 20 C -0.13 -2.11 10.04 -39.53 -0.40 -2.51 16 21 C -0.05 -0.77 6.15 -104.05 -0.64 -1.41 16 22 C -0.13 -1.90 6.14 -104.21 -0.64 -2.54 16 23 C -0.01 -0.19 9.52 -39.54 -0.38 -0.57 16 24 C -0.08 -0.84 6.77 -26.85 -0.18 -1.02 16 25 C -0.12 -1.12 7.07 -25.32 -0.18 -1.30 16 26 C -0.09 -0.93 6.80 -26.70 -0.18 -1.11 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 33 H 0.08 1.17 7.61 -51.93 -0.40 0.77 16 34 H 0.06 1.63 6.60 -51.93 -0.34 1.29 16 35 H 0.05 1.34 6.91 -51.94 -0.36 0.98 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.15 2.81 7.62 -52.49 -0.40 2.41 16 38 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 39 H 0.13 1.89 7.61 -52.48 -0.40 1.49 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -33.11 383.04 -10.86 -43.97 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.94 Total: 1.86 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -2.33 Total: -25.30 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.42 Total: -45.60 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -2.15 Total: -50.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.61 Total: 54.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.11 -10.86 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069842018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.232 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds