Wall clock time and date at job start Tue Mar 31 2020 05:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47168 * 220.93750 * 3 2 1 5 5 C 1.37101 * 120.00210 * 264.23470 * 4 3 2 6 6 H 1.07996 * 120.00265 * 197.72044 * 5 4 3 7 7 C 1.38956 * 119.99866 * 17.71630 * 5 4 3 8 8 N 1.31407 * 119.99724 * 21.40032 * 7 5 4 9 9 Si 1.86801 * 119.99934 * 201.39728 * 7 5 4 10 10 H 1.48498 * 109.46967 * 60.00465 * 9 7 5 11 11 H 1.48503 * 109.46705 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46999 * 300.00082 * 9 7 5 13 13 C 1.34777 * 120.00337 * 84.23340 * 4 3 2 14 14 O 1.21288 * 120.00096 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99506 * 359.97438 * 13 4 3 16 16 C 1.53004 * 109.47094 * 179.97438 * 15 13 4 17 17 S 1.81398 * 109.47164 * 180.02562 * 16 15 13 18 18 C 1.81398 * 103.00017 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.47506 * 180.02562 * 18 17 16 20 20 C 1.38267 * 119.99378 * 270.27788 * 19 18 17 21 21 C 1.38223 * 120.02720 * 180.27594 * 20 19 18 22 22 C 1.38239 * 120.00853 * 359.44150 * 21 20 19 23 23 C 1.38329 * 119.99150 * 0.28310 * 22 21 20 24 24 Cl 1.73598 * 120.01636 * 179.97438 * 23 22 21 25 25 C 1.38189 * 119.99353 * 89.99730 * 19 18 17 26 26 H 1.09003 * 109.47377 * 100.93925 * 3 2 1 27 27 H 1.08996 * 109.47253 * 340.93552 * 3 2 1 28 28 H 0.97001 * 120.00297 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47370 * 60.00499 * 15 13 4 30 30 H 1.08998 * 109.47328 * 299.99901 * 15 13 4 31 31 H 1.09006 * 109.46550 * 60.00494 * 16 15 13 32 32 H 1.08990 * 109.47358 * 300.00282 * 16 15 13 33 33 H 1.09007 * 109.47427 * 59.99783 * 18 17 16 34 34 H 1.09003 * 109.47462 * 300.00105 * 18 17 16 35 35 H 1.08006 * 119.98824 * 0.02562 * 20 19 18 36 36 H 1.07992 * 119.99278 * 179.72686 * 21 20 19 37 37 H 1.08005 * 120.00443 * 180.25733 * 22 21 20 38 38 H 1.08002 * 120.01186 * 0.02708 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 1.0443 0.9050 5 6 3.4363 2.2767 0.4101 6 1 4.0523 2.9426 0.9961 7 6 2.9888 2.6689 -0.8456 8 7 1.9357 2.0906 -1.3780 9 14 3.8840 4.0184 -1.7767 10 1 5.2922 3.6086 -2.0097 11 1 3.2127 4.2487 -3.0812 12 1 3.8583 5.2708 -0.9793 13 6 3.2101 0.7930 2.2242 14 8 3.6136 1.6572 2.9735 15 6 2.8353 -0.5615 2.7683 16 6 3.0573 -0.5823 4.2820 17 16 2.6070 -2.2128 4.9369 18 6 2.9320 -2.0431 6.7134 19 6 2.6019 -3.3377 7.4105 20 6 1.3253 -3.5560 7.8947 21 6 1.0232 -4.7408 8.5393 22 6 1.9944 -5.7130 8.6900 23 6 3.2702 -5.4976 8.2008 24 17 4.4904 -6.7177 8.3902 25 6 3.5735 -4.3088 7.5606 26 1 2.9713 0.1958 -1.0090 27 1 2.9718 -0.9704 0.3357 28 1 1.6230 2.3646 -2.2544 29 1 3.4558 -1.3256 2.3001 30 1 1.7861 -0.7624 2.5518 31 1 2.4371 0.1819 4.7507 32 1 4.1065 -0.3815 4.4982 33 1 2.3144 -1.2427 7.1211 34 1 3.9843 -1.8051 6.8692 35 1 0.5649 -2.7987 7.7728 36 1 0.0271 -4.9089 8.9211 37 1 1.7571 -6.6405 9.1900 38 1 4.5696 -4.1399 7.1788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069842961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:03 Heat of formation + Delta-G solvation = 11.534617 kcal Electronic energy + Delta-G solvation = -22563.492515 eV Core-core repulsion = 18944.304665 eV Total energy + Delta-G solvation = -3619.187850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.060 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.69781 -38.95626 -36.80678 -35.89194 -34.43181 -33.16719 -32.51904 -31.66816 -31.08341 -27.61424 -27.47205 -25.64630 -23.42347 -23.03666 -21.84169 -19.11709 -17.96364 -17.39711 -16.78650 -16.42087 -16.02017 -15.92103 -15.74004 -15.00580 -14.88749 -14.30840 -14.26442 -14.06380 -13.65743 -13.43659 -13.30552 -13.02124 -12.82796 -12.43064 -12.17826 -11.97729 -11.81506 -11.75078 -11.64669 -11.55303 -11.33996 -11.20610 -11.13209 -11.01019 -10.59330 -10.47065 -10.34221 -10.02615 -9.30739 -9.22481 -8.98717 -8.67420 -8.10689 -7.66521 -6.55309 -4.05051 0.62847 0.86575 1.75834 1.83208 2.56973 3.08599 3.19258 3.21500 3.36034 3.50041 3.74711 3.95172 4.08698 4.22342 4.41485 4.67543 4.74732 4.79546 4.85208 4.89551 5.06430 5.13670 5.16813 5.24777 5.25037 5.39180 5.53979 5.57130 5.78652 5.84376 5.95996 6.02256 6.11761 6.14568 6.17021 6.41290 6.46839 7.42336 7.83055 8.21835 8.71149 8.93700 9.13612 9.66159 10.50651 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.001976 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.038845 B =14168.394278 C =14463.529334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.245 3.755 3 C 0.220 3.780 4 N -0.440 5.440 5 C -0.316 4.316 6 H 0.109 0.891 7 C 0.033 3.967 8 N -0.876 5.876 9 Si 0.929 3.071 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.459 3.541 14 O -0.575 6.575 15 C -0.121 4.121 16 C -0.060 4.060 17 S -0.257 6.257 18 C -0.050 4.050 19 C -0.055 4.055 20 C -0.097 4.097 21 C -0.107 4.107 22 C -0.110 4.110 23 C -0.035 4.035 24 Cl -0.071 7.071 25 C -0.093 4.093 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.275 0.725 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -15.436 15.839 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.074 4.074 3 C 0.093 3.907 4 N -0.160 5.160 5 C -0.443 4.443 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.514 5.514 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.246 3.754 14 O -0.459 6.459 15 C -0.162 4.162 16 C -0.208 4.208 17 S -0.027 6.027 18 C -0.197 4.197 19 C -0.056 4.056 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.061 4.061 24 Cl -0.042 7.042 25 C -0.113 4.113 26 H 0.146 0.854 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.200 -15.920 15.454 22.220 hybrid contribution 1.153 1.669 -0.099 2.031 sum 2.353 -14.252 15.356 21.082 Atomic orbital electron populations 1.80904 1.13575 1.10692 1.09863 1.29282 0.95353 0.90932 0.91813 1.18757 0.81665 0.91134 0.99178 1.43619 1.56326 1.11830 1.04218 1.19674 1.30221 0.93548 1.00835 0.87381 1.25295 0.94945 0.98911 0.97995 1.69853 1.19725 1.43565 1.18279 0.85950 0.79485 0.80677 0.78403 1.19644 1.20993 1.19807 1.19913 0.84127 0.89063 0.82258 1.90543 1.50628 1.48137 1.56568 1.21331 1.03534 0.97943 0.93432 1.23106 1.05257 0.94116 0.98328 1.87013 1.88577 1.22458 1.04639 1.22263 1.05385 0.97487 0.94608 1.19197 0.93792 0.94651 0.98007 1.21212 0.95848 0.97805 0.96786 1.21111 0.99339 0.93155 0.98905 1.21092 0.91393 1.00254 1.00184 1.20872 0.90770 0.91493 1.02977 1.98377 1.54933 1.54583 1.96344 1.20953 1.00456 0.91595 0.98299 0.85422 0.89711 0.91481 0.89088 0.89438 0.89399 0.89227 0.88703 0.88795 0.84964 0.84820 0.84932 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.07 18.54 42.16 0.78 -10.29 16 2 C 0.24 5.32 12.95 -20.76 -0.27 5.05 16 3 C 0.22 4.24 4.91 -6.83 -0.03 4.21 16 4 N -0.44 -9.96 2.60 -117.93 -0.31 -10.27 16 5 C -0.32 -7.94 9.32 -14.93 -0.14 -8.08 16 6 H 0.11 2.87 7.39 -52.49 -0.39 2.48 16 7 C 0.03 0.79 4.87 -17.47 -0.08 0.70 16 8 N -0.88 -21.72 9.48 55.50 0.53 -21.20 16 9 Si 0.93 19.27 29.60 -169.99 -5.03 14.24 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.46 9.96 7.57 -10.99 -0.08 9.87 16 14 O -0.58 -14.35 15.63 5.55 0.09 -14.26 16 15 C -0.12 -2.00 4.31 -27.88 -0.12 -2.12 16 16 C -0.06 -0.89 5.23 37.16 0.19 -0.69 16 17 S -0.26 -3.31 21.72 -107.50 -2.33 -5.64 16 18 C -0.05 -0.50 6.07 36.00 0.22 -0.28 16 19 C -0.05 -0.53 5.14 -104.63 -0.54 -1.06 16 20 C -0.10 -0.83 9.70 -39.58 -0.38 -1.22 16 21 C -0.11 -0.80 10.05 -39.59 -0.40 -1.20 16 22 C -0.11 -0.87 9.83 -39.55 -0.39 -1.26 16 23 C -0.03 -0.32 6.32 -39.50 -0.25 -0.56 16 24 Cl -0.07 -0.63 28.96 -51.86 -1.50 -2.13 16 25 C -0.09 -0.88 9.49 -39.55 -0.38 -1.25 16 26 H 0.13 2.52 6.46 -51.93 -0.34 2.18 16 27 H 0.09 1.24 6.68 -51.93 -0.35 0.89 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.09 1.29 7.41 -51.93 -0.39 0.91 16 30 H 0.09 1.48 7.51 -51.93 -0.39 1.09 16 31 H 0.09 1.39 8.10 -51.92 -0.42 0.97 16 32 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.09 0.86 8.09 -51.92 -0.42 0.44 16 34 H 0.09 0.85 8.08 -51.92 -0.42 0.43 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -30.07 361.96 -9.33 -39.40 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.35 Total: 2.60 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.65 Total: 2.10 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 1.00 Total: -41.76 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -2.33 Total: -5.64 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.07 -9.33 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069842961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.936 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds