Wall clock time and date at job start Tue Mar 31 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48494 * 109.46930 * 239.99613 * 3 2 1 5 5 H 1.48499 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46827 * 119.99796 * 3 2 1 7 7 C 1.37879 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00359 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47126 * 179.97438 * 9 7 2 11 11 O 1.42908 * 109.47360 * 179.97438 * 10 9 7 12 12 C 1.35981 * 117.00176 * 179.97438 * 11 10 9 13 13 C 1.38790 * 120.49450 * 0.27165 * 12 11 10 14 14 C 1.38789 * 118.44573 * 180.24507 * 13 12 11 15 15 C 1.38089 * 119.36104 * 359.75020 * 14 13 12 16 16 N 1.31961 * 120.95840 * 359.97438 * 15 14 13 17 17 C 1.32301 * 121.68586 * 0.02562 * 16 15 14 18 18 N 1.39446 * 119.72789 * 179.97438 * 17 16 15 19 19 C 1.34771 * 120.00493 * 359.97438 * 18 17 16 20 20 O 1.21708 * 119.99612 * 0.02562 * 19 18 17 21 21 C 1.46366 * 120.00493 * 180.02562 * 19 18 17 22 22 C 1.34843 * 120.00350 * 180.02562 * 21 19 18 23 23 C 1.47195 * 120.00006 * 179.97438 * 22 21 19 24 24 C 1.39844 * 120.16825 * 179.97438 * 23 22 21 25 25 C 1.37887 * 119.82550 * 179.97438 * 24 23 22 26 26 C 1.38405 * 120.17263 * 359.97438 * 25 24 23 27 27 C 1.38405 * 120.34297 * 359.97438 * 26 25 24 28 28 C 1.37882 * 120.17255 * 0.02562 * 27 26 25 29 29 H 0.96996 * 120.00120 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47797 * 59.99530 * 9 7 2 31 31 H 1.09011 * 109.46985 * 299.99648 * 9 7 2 32 32 H 1.09000 * 109.47686 * 59.99689 * 10 9 7 33 33 H 1.09005 * 109.46916 * 299.99219 * 10 9 7 34 34 H 1.07998 * 120.77997 * 359.97438 * 13 12 11 35 35 H 1.07995 * 120.32293 * 179.73270 * 14 13 12 36 36 H 1.07997 * 119.52144 * 180.02562 * 15 14 13 37 37 H 0.97005 * 119.99894 * 180.02562 * 18 17 16 38 38 H 1.08007 * 120.00293 * 359.97438 * 21 19 18 39 39 H 1.07996 * 119.99883 * 359.97438 * 22 21 19 40 40 H 1.08000 * 120.09028 * 359.95440 * 24 23 22 41 41 H 1.08003 * 119.91440 * 180.02562 * 25 24 23 42 42 H 1.07999 * 119.82948 * 179.72315 * 26 25 24 43 43 H 1.08006 * 119.91164 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.08811 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5309 -4.8997 0.0011 12 6 2.2715 -6.0401 0.0007 13 6 3.6581 -5.9794 0.0053 14 6 4.3719 -7.1696 -0.0006 15 6 3.6880 -8.3693 -0.0056 16 7 2.3687 -8.3986 -0.0043 17 6 1.6490 -7.2885 0.0013 18 7 0.2567 -7.3671 0.0019 19 6 -0.3504 -8.5703 -0.0037 20 8 0.3166 -9.5883 -0.0088 21 6 -1.8117 -8.6528 -0.0037 22 6 -2.4191 -9.8566 -0.0088 23 6 -3.8887 -9.9395 -0.0082 24 6 -4.5224 -11.1861 -0.0140 25 6 -5.8995 -11.2555 -0.0128 26 6 -6.6544 -10.0955 -0.0054 27 6 -6.0347 -8.8580 0.0015 28 6 -4.6586 -8.7721 0.0004 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5572 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 2.8721 -3.6043 0.8905 33 1 2.8719 -3.6043 -0.8896 34 1 4.1696 -5.0283 0.0090 35 1 5.4518 -7.1577 -0.0015 36 1 4.2409 -9.2970 -0.0097 37 1 -0.2748 -6.5557 0.0055 38 1 -2.4036 -7.7494 0.0013 39 1 -1.8273 -10.7600 -0.0133 40 1 -3.9346 -12.0922 -0.0196 41 1 -6.3903 -12.2176 -0.0168 42 1 -7.7327 -10.1563 -0.0090 43 1 -6.6306 -7.9573 0.0068 44 1 -4.1764 -7.8057 0.0062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069895892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:48 Heat of formation + Delta-G solvation = 10.274317 kcal Electronic energy + Delta-G solvation = -26640.460847 eV Core-core repulsion = 22716.731420 eV Total energy + Delta-G solvation = -3923.729427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86815 -39.63296 -39.04930 -37.76151 -34.90470 -34.22610 -33.47847 -31.66223 -31.32809 -30.71408 -29.92690 -28.91774 -25.47904 -24.98724 -23.42169 -22.94283 -22.65384 -21.41793 -20.66214 -19.57304 -18.22775 -17.81372 -17.45670 -16.86106 -16.17715 -15.92950 -15.78743 -15.39267 -15.23797 -14.90914 -14.75390 -14.58020 -14.21132 -13.93399 -13.69370 -13.65266 -13.51393 -13.22539 -12.83598 -12.40601 -12.35968 -12.02439 -11.93217 -11.57635 -11.24645 -11.08218 -10.98316 -10.80338 -10.69656 -10.53614 -10.29402 -10.04975 -9.78429 -9.43322 -9.29289 -9.21426 -9.04847 -8.55643 -8.52429 -7.64464 -6.18438 -4.23473 0.25977 1.08253 1.22269 1.45507 1.85075 2.93191 3.22542 3.23454 3.28092 3.29187 3.52813 3.61552 4.04885 4.26614 4.33397 4.46457 4.62658 4.63109 4.74942 4.93063 4.95562 4.98873 5.08933 5.11868 5.18322 5.18802 5.30406 5.46984 5.59816 5.66047 5.82018 5.85313 5.89615 5.95639 6.06505 6.15370 6.17281 6.21229 6.35295 6.37766 6.53727 6.62300 6.64496 7.28813 7.34095 7.52013 7.63455 7.84852 8.07442 8.13813 8.36421 8.81510 9.41410 10.92942 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.008912 B = 0.002355 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.139265 B =11885.162060 C =15005.838237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.068 3.932 13 C -0.148 4.148 14 C -0.160 4.160 15 C 0.075 3.925 16 N -0.443 5.443 17 C 0.329 3.671 18 N -0.646 5.646 19 C 0.538 3.462 20 O -0.486 6.486 21 C -0.204 4.204 22 C -0.023 4.023 23 C -0.074 4.074 24 C -0.097 4.097 25 C -0.125 4.125 26 C -0.112 4.112 27 C -0.121 4.121 28 C -0.101 4.101 29 H 0.265 0.735 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.425 0.575 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 -20.191 0.002 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.016 3.984 13 C -0.175 4.175 14 C -0.181 4.181 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.096 3.904 18 N -0.293 5.293 19 C 0.327 3.673 20 O -0.359 6.359 21 C -0.224 4.224 22 C -0.043 4.043 23 C -0.074 4.074 24 C -0.115 4.115 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.139 4.139 28 C -0.119 4.119 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.263 0.737 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.024 -21.572 -0.005 22.687 hybrid contribution 0.875 2.423 0.004 2.576 sum -6.150 -19.149 -0.001 20.112 Atomic orbital electron populations 1.69952 1.06099 1.27202 1.49437 1.24980 0.94922 0.99407 0.94788 0.86541 0.79519 0.82531 0.78761 1.20060 1.21078 1.20065 1.20909 0.93033 0.90141 1.52625 0.92383 1.19122 0.94126 0.88893 0.98880 1.23399 0.97258 0.80300 0.99841 1.86101 1.36250 1.12904 1.87576 1.19604 0.91157 0.87103 1.00543 1.21609 0.92235 1.00363 1.03272 1.21894 1.01188 0.92535 1.02503 1.22417 0.88819 0.97888 0.99088 1.67645 1.07853 1.26898 1.13462 1.17787 0.84838 0.86964 1.00853 1.43321 1.03826 1.10401 1.71777 1.18429 0.88366 0.83191 0.77361 1.90896 1.65990 1.33838 1.45128 1.22922 0.93225 0.99413 1.06887 1.22344 0.92163 0.98407 0.91383 1.19057 0.92497 0.93671 1.02135 1.21393 0.94792 0.96873 0.98428 1.21114 0.93836 0.98628 1.00675 1.21333 1.00086 0.92596 0.98973 1.21156 0.94608 0.98005 1.00150 1.21521 0.94008 0.98154 0.98206 0.92577 0.95355 0.95344 0.92938 0.92931 0.83730 0.84790 0.82621 0.73687 0.84922 0.84511 0.85446 0.85753 0.85915 0.85550 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.09 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.30 4.70 37.15 0.17 1.47 16 11 O -0.32 -5.82 9.38 -19.68 -0.18 -6.01 16 12 C 0.07 1.13 6.72 -38.91 -0.26 0.87 16 13 C -0.15 -2.17 9.14 -39.17 -0.36 -2.53 16 14 C -0.16 -2.01 10.10 -39.43 -0.40 -2.41 16 15 C 0.07 1.03 11.17 -17.55 -0.20 0.83 16 16 N -0.44 -7.54 7.87 -12.24 -0.10 -7.64 16 17 C 0.33 5.55 7.44 -154.53 -1.15 4.40 16 18 N -0.65 -9.70 5.38 -12.58 -0.07 -9.77 16 19 C 0.54 7.95 7.70 -12.99 -0.10 7.85 16 20 O -0.49 -8.66 14.48 5.18 0.08 -8.59 16 21 C -0.20 -2.27 9.41 -37.52 -0.35 -2.62 16 22 C -0.02 -0.24 9.46 -37.15 -0.35 -0.59 16 23 C -0.07 -0.69 5.87 -105.06 -0.62 -1.31 16 24 C -0.10 -0.79 9.80 -39.11 -0.38 -1.18 16 25 C -0.12 -0.90 10.03 -39.65 -0.40 -1.30 16 26 C -0.11 -0.81 10.04 -39.46 -0.40 -1.20 16 27 C -0.12 -0.95 10.03 -39.65 -0.40 -1.35 16 28 C -0.10 -0.89 9.41 -39.11 -0.37 -1.26 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 33 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 34 H 0.15 1.96 6.44 -52.49 -0.34 1.62 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.43 5.63 8.02 -40.82 -0.33 5.30 16 38 H 0.13 1.18 6.07 -52.48 -0.32 0.86 16 39 H 0.14 1.44 7.52 -52.49 -0.39 1.04 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.13 1.00 6.17 -52.49 -0.32 0.68 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -32.98 382.50 -10.33 -43.31 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.43 Total: 4.72 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -6.11 Total: -12.65 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.57 Total: -42.16 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.11 Total: -14.59 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.98 -10.33 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069895892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.587 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds