Wall clock time and date at job start Tue Mar 31 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47311 * 2 1 4 4 C 1.50699 * 109.47065 * 120.00176 * 2 1 3 5 5 H 1.08003 * 119.99577 * 114.58657 * 4 2 1 6 6 C 1.37876 * 120.00229 * 294.58349 * 4 2 1 7 7 N 1.31515 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99997 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47137 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46958 * 120.00524 * 8 6 4 11 11 H 1.48506 * 109.47105 * 240.00177 * 8 6 4 12 12 N 1.46900 * 109.46611 * 240.00364 * 2 1 3 13 13 C 1.46954 * 110.99703 * 171.51289 * 12 2 1 14 14 C 1.53060 * 109.36422 * 183.18565 * 13 12 2 15 15 N 1.46958 * 109.36099 * 301.59763 * 14 13 12 16 16 C 1.38544 * 110.99568 * 183.18722 * 15 14 13 17 17 C 1.39750 * 120.48531 * 179.97438 * 16 15 14 18 18 C 1.38178 * 118.49785 * 180.02562 * 17 16 15 19 19 N 1.32423 * 119.29749 * 359.97438 * 18 17 16 20 20 C 1.32562 * 120.93094 * 0.02562 * 19 18 17 21 21 C 1.48316 * 119.17865 * 179.97438 * 20 19 18 22 22 C 1.39369 * 120.12412 * 179.72041 * 21 20 19 23 23 C 1.38016 * 119.87218 * 179.74773 * 22 21 20 24 24 C 1.38324 * 120.12468 * 0.53343 * 23 22 21 25 25 C 1.38320 * 120.25061 * 359.74229 * 24 23 22 26 26 C 1.38007 * 120.12795 * 359.97438 * 25 24 23 27 27 N 1.32580 * 121.63899 * 359.97438 * 20 19 18 28 28 C 1.46954 * 110.88138 * 59.32254 * 15 14 13 29 29 C 1.46967 * 110.99824 * 295.30507 * 12 2 1 30 30 H 1.09001 * 109.47523 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46923 * 300.00119 * 1 2 3 32 32 H 1.08999 * 109.47703 * 59.99270 * 1 2 3 33 33 H 0.96995 * 120.00102 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.49072 * 63.22067 * 13 12 2 35 35 H 1.09001 * 109.50725 * 303.15932 * 13 12 2 36 36 H 1.08995 * 109.48851 * 181.63238 * 14 13 12 37 37 H 1.09000 * 109.50241 * 61.57547 * 14 13 12 38 38 H 1.07996 * 120.75214 * 0.04671 * 17 16 15 39 39 H 1.08001 * 120.34851 * 179.97438 * 18 17 16 40 40 H 1.07997 * 120.06495 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.93555 * 180.27271 * 23 22 21 42 42 H 1.08007 * 119.87029 * 179.76233 * 24 23 22 43 43 H 1.08001 * 119.93743 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.06400 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.49112 * 60.64606 * 28 15 14 46 46 H 1.09003 * 109.48699 * 180.71002 * 28 15 14 47 47 H 1.08993 * 109.49188 * 296.78413 * 29 12 2 48 48 H 1.08998 * 109.48645 * 56.82926 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5792 -1.6367 1.1336 6 6 1.7938 -0.1780 2.4797 7 7 1.1275 0.9498 2.5975 8 14 2.4171 -1.0583 4.0047 9 1 3.1322 -2.2965 3.6040 10 1 3.3467 -0.1678 4.7450 11 1 1.2682 -1.4100 4.8776 12 7 2.0196 -0.6924 -1.1995 13 6 3.4744 -0.5392 -1.3391 14 6 3.9325 -1.2052 -2.6388 15 7 3.5550 -2.6253 -2.6180 16 6 4.0167 -3.2783 -3.7492 17 6 3.7681 -4.6413 -3.9322 18 6 4.2481 -5.2514 -5.0753 19 7 4.9244 -4.5327 -5.9582 20 6 5.1457 -3.2409 -5.7591 21 6 5.9083 -2.4732 -6.7733 22 6 6.1474 -1.1129 -6.5867 23 6 6.8622 -0.4046 -7.5314 24 6 7.3315 -1.0400 -8.6669 25 6 7.0923 -2.3886 -8.8601 26 6 6.3837 -3.1081 -7.9194 27 7 4.7023 -2.6182 -4.6759 28 6 2.1001 -2.7785 -2.4784 29 6 1.6421 -2.1127 -1.1787 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 0.9593 1.3242 3.4763 34 1 3.9728 -1.0122 -0.4929 35 1 3.7280 0.5206 -1.3646 36 1 5.0151 -1.1180 -2.7302 37 1 3.4552 -0.7144 -3.4870 38 1 3.2130 -5.2049 -3.1970 39 1 4.0735 -6.3034 -5.2468 40 1 5.7779 -0.6149 -5.7025 41 1 7.0518 0.6486 -7.3857 42 1 7.8871 -0.4809 -9.4053 43 1 7.4614 -2.8796 -9.7484 44 1 6.1979 -4.1612 -8.0711 45 1 1.6018 -2.3056 -3.3246 46 1 1.8469 -3.8384 -2.4528 47 1 2.1196 -2.6035 -0.3307 48 1 0.5595 -2.1999 -1.0869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069966976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:09 Heat of formation + Delta-G solvation = 100.790112 kcal Electronic energy + Delta-G solvation = -28743.357211 eV Core-core repulsion = 24991.678688 eV Total energy + Delta-G solvation = -3751.678522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28806 -39.31568 -38.61831 -36.08185 -33.53106 -33.09252 -31.91023 -31.05106 -30.81055 -29.88040 -29.08051 -25.84710 -25.14040 -24.94027 -23.43933 -23.04078 -22.19449 -21.37368 -20.33960 -19.25060 -18.02523 -17.46130 -16.71390 -16.24769 -15.79480 -15.32480 -15.23237 -14.99114 -14.81273 -14.40952 -14.28001 -14.15955 -14.02746 -13.64376 -13.55179 -13.37663 -13.19235 -12.82922 -12.53207 -11.90807 -11.57041 -11.44023 -11.25023 -11.19058 -11.09836 -11.03152 -10.83619 -10.75954 -10.65173 -10.60162 -10.32796 -10.12218 -9.92920 -9.70024 -9.28588 -9.22945 -9.11129 -8.85110 -8.45080 -8.28817 -7.24272 -6.05147 -4.16415 0.34481 1.10399 1.24930 1.55694 3.23293 3.32337 3.32719 3.35789 3.50706 3.75413 3.99989 4.14109 4.36767 4.74228 4.77598 4.81621 4.90488 4.92086 5.02647 5.15040 5.22445 5.25799 5.32189 5.36003 5.41899 5.50712 5.62410 5.69835 5.72885 5.87913 5.90123 5.94545 6.07717 6.15169 6.29602 6.32284 6.39580 6.47736 6.57609 6.67523 6.73909 6.77017 6.85080 6.97171 7.10323 7.12015 7.19681 7.46782 7.64769 7.86184 8.06096 8.08664 8.20724 8.35782 8.93340 9.51652 10.97220 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.002503 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.183612 B =11185.006838 C =11825.231128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.207 3.793 3 H 0.043 0.957 4 C -0.543 4.543 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.539 5.539 13 C 0.060 3.940 14 C 0.070 3.930 15 N -0.469 5.469 16 C 0.371 3.629 17 C -0.251 4.251 18 C 0.163 3.837 19 N -0.542 5.542 20 C 0.381 3.619 21 C -0.045 4.045 22 C -0.069 4.069 23 C -0.132 4.132 24 C -0.103 4.103 25 C -0.134 4.134 26 C -0.072 4.072 27 N -0.548 5.548 28 C 0.065 3.935 29 C 0.060 3.940 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.148 0.852 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.136 0.864 45 H 0.051 0.949 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 -8.174 -19.680 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.101 3.899 3 H 0.061 0.939 4 C -0.582 4.582 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.264 5.264 13 C -0.069 4.069 14 C -0.056 4.056 15 N -0.186 5.186 16 C 0.129 3.871 17 C -0.276 4.276 18 C 0.000 4.000 19 N -0.258 5.258 20 C 0.115 3.885 21 C -0.047 4.047 22 C -0.089 4.089 23 C -0.150 4.150 24 C -0.122 4.122 25 C -0.152 4.152 26 C -0.091 4.091 27 N -0.269 5.269 28 C -0.060 4.060 29 C -0.069 4.069 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.165 0.835 39 H 0.185 0.815 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.154 0.846 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.317 -7.507 -20.075 22.990 hybrid contribution -0.040 -1.080 1.960 2.239 sum 8.278 -8.588 -18.114 21.689 Atomic orbital electron populations 1.21741 0.97876 0.98924 0.99892 1.19275 0.92138 0.94347 0.84170 0.93896 1.21732 1.35887 1.08806 0.91769 0.92306 1.24913 0.94841 0.94753 0.98920 1.69918 1.40062 1.18865 1.23632 0.86625 0.78668 0.79849 0.83385 1.19886 1.21023 1.21002 1.62721 1.10804 1.10576 1.42290 1.22010 0.90178 0.99818 0.94851 1.22214 1.00838 0.83610 0.98949 1.59036 1.14869 1.15719 1.28958 1.20234 0.89541 0.90927 0.86389 1.22412 1.08041 0.95296 1.01888 1.22923 0.88989 0.99924 0.88163 1.68294 1.17745 1.07211 1.32585 1.21051 0.90893 0.86933 0.89645 1.18105 1.00070 0.92980 0.93514 1.21382 0.95568 0.92822 0.99126 1.21149 0.99057 1.00292 0.94459 1.21323 0.98636 0.94877 0.97334 1.21102 1.00093 0.94470 0.99567 1.21306 0.95109 1.00637 0.92084 1.68320 1.16329 1.39658 1.02563 1.22498 0.82239 1.01050 1.00254 1.22041 1.00745 0.90204 0.93942 0.95395 0.90655 0.96460 0.92920 0.93382 0.90658 0.90110 0.92618 0.83473 0.81460 0.84503 0.85508 0.85914 0.85671 0.84636 0.93085 0.90212 0.92810 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.92 37.16 0.33 -2.58 16 2 C 0.21 4.95 2.23 -68.86 -0.15 4.80 16 3 H 0.04 1.15 8.05 -51.93 -0.42 0.73 16 4 C -0.54 -14.07 7.11 -34.44 -0.24 -14.31 16 5 H 0.06 1.55 5.81 -52.48 -0.30 1.24 16 6 C 0.07 1.83 5.33 -17.82 -0.09 1.73 16 7 N -0.89 -24.60 11.73 55.43 0.65 -23.95 16 8 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.54 -10.97 4.67 -227.87 -1.06 -12.03 16 13 C 0.06 1.14 5.36 -3.76 -0.02 1.12 16 14 C 0.07 1.15 4.80 -3.76 -0.02 1.13 16 15 N -0.47 -7.39 4.73 -172.86 -0.82 -8.21 16 16 C 0.37 5.47 6.41 -154.87 -0.99 4.48 16 17 C -0.25 -3.04 9.30 -39.04 -0.36 -3.40 16 18 C 0.16 1.80 11.28 -17.32 -0.20 1.60 16 19 N -0.54 -7.09 9.45 -11.23 -0.11 -7.20 16 20 C 0.38 5.40 7.56 -156.98 -1.19 4.22 16 21 C -0.04 -0.56 5.88 -104.91 -0.62 -1.18 16 22 C -0.07 -0.81 9.56 -39.24 -0.38 -1.18 16 23 C -0.13 -1.24 10.03 -39.63 -0.40 -1.63 16 24 C -0.10 -0.86 10.04 -39.52 -0.40 -1.26 16 25 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 26 C -0.07 -0.76 9.56 -39.24 -0.38 -1.14 16 27 N -0.55 -8.27 7.88 -10.38 -0.08 -8.36 16 28 C 0.07 0.98 5.37 -3.77 -0.02 0.96 16 29 C 0.06 1.09 4.96 -3.76 -0.02 1.07 16 30 H 0.03 0.60 6.45 -51.93 -0.33 0.27 16 31 H 0.07 1.92 6.51 -51.92 -0.34 1.58 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.05 1.01 7.23 -51.93 -0.38 0.63 16 35 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 36 H 0.08 1.28 7.84 -51.93 -0.41 0.87 16 37 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 38 H 0.15 1.49 7.25 -52.49 -0.38 1.11 16 39 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.14 1.65 7.51 -52.49 -0.39 1.26 16 41 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.14 1.37 7.51 -52.48 -0.39 0.97 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.00 6.86 -51.93 -0.36 0.65 16 47 H 0.05 1.10 6.24 -51.93 -0.32 0.77 16 48 H 0.08 1.49 6.28 -51.93 -0.33 1.16 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -29.25 379.57 -13.12 -42.37 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.86 Total: 2.98 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -5.53 Total: -7.14 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -1.42 Total: -59.76 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.25 -13.12 -42.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069966976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.157 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds