Wall clock time and date at job start Tue Mar 31 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47106 * 2 1 4 4 C 1.50710 * 109.46850 * 240.00492 * 2 1 3 5 5 H 1.07994 * 119.99811 * 245.45829 * 4 2 1 6 6 C 1.37881 * 119.99593 * 65.46198 * 4 2 1 7 7 N 1.31514 * 120.00302 * 9.71728 * 6 4 2 8 8 Si 1.86798 * 119.99508 * 189.71539 * 6 4 2 9 9 H 1.48497 * 109.47342 * 84.99417 * 8 6 4 10 10 H 1.48502 * 109.47122 * 204.99734 * 8 6 4 11 11 H 1.48506 * 109.47434 * 324.99478 * 8 6 4 12 12 N 1.46897 * 109.47499 * 120.00589 * 2 1 3 13 13 C 1.46958 * 110.99964 * 295.00139 * 12 2 1 14 14 C 1.53049 * 109.36458 * 183.18805 * 13 12 2 15 15 N 1.46960 * 109.36507 * 301.59838 * 14 13 12 16 16 C 1.38542 * 111.00188 * 183.19345 * 15 14 13 17 17 C 1.39744 * 120.48795 * 180.02562 * 16 15 14 18 18 C 1.38176 * 118.49989 * 179.97438 * 17 16 15 19 19 N 1.32427 * 119.29484 * 0.02562 * 18 17 16 20 20 C 1.32561 * 120.93378 * 359.97438 * 19 18 17 21 21 C 1.48312 * 119.18012 * 180.02562 * 20 19 18 22 22 C 1.39377 * 120.12351 * 179.72891 * 21 20 19 23 23 C 1.38010 * 119.87237 * 179.70509 * 22 21 20 24 24 C 1.38328 * 120.12165 * 0.59310 * 23 22 21 25 25 C 1.38324 * 120.25416 * 359.67955 * 24 23 22 26 26 C 1.38004 * 120.12398 * 0.02562 * 25 24 23 27 27 N 1.32590 * 121.63668 * 0.02562 * 20 19 18 28 28 C 1.46949 * 110.88027 * 59.31876 * 15 14 13 29 29 C 1.46960 * 111.00061 * 58.80023 * 12 2 1 30 30 H 1.08992 * 109.46883 * 301.95142 * 1 2 3 31 31 H 1.08996 * 109.47112 * 61.95581 * 1 2 3 32 32 H 1.09004 * 109.46700 * 181.95451 * 1 2 3 33 33 H 0.97003 * 119.99576 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.48611 * 63.21922 * 13 12 2 35 35 H 1.09000 * 109.48735 * 303.15967 * 13 12 2 36 36 H 1.08999 * 109.48767 * 181.63303 * 14 13 12 37 37 H 1.09003 * 109.48814 * 61.56491 * 14 13 12 38 38 H 1.08000 * 120.75359 * 359.97438 * 17 16 15 39 39 H 1.08003 * 120.35269 * 179.97438 * 18 17 16 40 40 H 1.08004 * 120.05923 * 0.02562 * 22 21 20 41 41 H 1.07994 * 119.93439 * 180.30104 * 23 22 21 42 42 H 1.07998 * 119.87083 * 179.70435 * 24 23 22 43 43 H 1.08001 * 119.93769 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.06479 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.49186 * 60.64957 * 28 15 14 46 46 H 1.08997 * 109.49119 * 180.71513 * 28 15 14 47 47 H 1.09002 * 109.48406 * 296.78151 * 29 12 2 48 48 H 1.08999 * 109.48834 * 56.81960 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5785 -1.6370 -1.1341 6 6 1.7945 -0.1771 -2.4797 7 7 1.3022 1.0371 -2.5935 8 14 2.1717 -1.1793 -4.0102 9 1 1.0172 -2.0595 -4.3226 10 1 2.4195 -0.2638 -5.1529 11 1 3.3784 -2.0116 -3.7721 12 7 2.0198 -0.6926 1.1993 13 6 1.6487 0.0392 2.4185 14 6 2.2437 -0.6702 3.6371 15 7 1.7492 -2.0533 3.6854 16 6 2.2110 -2.7065 4.8166 17 6 1.8597 -4.0369 5.0601 18 6 2.3438 -4.6485 6.2007 19 7 3.1205 -3.9615 7.0244 20 6 3.4380 -2.7001 6.7686 21 6 4.3112 -1.9675 7.7175 22 6 4.6619 -0.6425 7.4650 23 6 5.4698 0.0362 8.3545 24 6 5.9413 -0.6000 9.4887 25 6 5.6010 -1.9167 9.7416 26 6 4.7889 -2.6033 8.8621 27 7 2.9942 -2.0772 5.6855 28 6 2.1203 -2.7850 2.4663 29 6 1.5253 -2.0757 1.2476 30 1 -0.3633 0.5438 0.8719 31 1 -0.3633 0.4831 -0.9070 32 1 -0.3633 -1.0271 0.0351 33 1 1.1352 1.4123 -3.4723 34 1 0.5628 0.0682 2.5088 35 1 2.0367 1.0564 2.3644 36 1 1.9456 -0.1455 4.5448 37 1 3.3310 -0.6752 3.5600 38 1 1.2241 -4.5750 4.3725 39 1 2.0907 -5.6756 6.4185 40 1 4.2979 -0.1462 6.5774 41 1 5.7382 1.0645 8.1623 42 1 6.5771 -0.0665 10.1797 43 1 5.9717 -2.4083 10.6289 44 1 4.5235 -3.6312 9.0606 45 1 3.2061 -2.8141 2.3758 46 1 1.7322 -3.8021 2.5203 47 1 0.4380 -2.0706 1.3247 48 1 1.8230 -2.6002 0.3397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069966980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:16 Heat of formation + Delta-G solvation = 102.586187 kcal Electronic energy + Delta-G solvation = -28654.398967 eV Core-core repulsion = 24902.798328 eV Total energy + Delta-G solvation = -3751.600638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.32139 -39.36149 -38.68214 -36.17258 -33.55518 -33.11745 -31.98386 -31.06920 -30.80748 -29.95556 -28.95428 -25.84458 -25.32694 -24.91884 -23.49676 -23.09002 -22.21730 -21.45650 -20.75058 -18.97160 -18.00894 -17.47215 -16.68795 -16.23982 -15.80392 -15.36391 -15.29595 -14.98618 -14.83573 -14.43766 -14.29816 -14.24374 -13.98482 -13.72177 -13.56969 -13.38919 -13.24939 -12.84753 -12.66552 -11.89563 -11.70984 -11.56233 -11.26767 -11.25529 -11.13743 -11.08940 -10.91585 -10.79101 -10.70342 -10.55134 -10.40863 -10.30215 -10.08867 -9.69119 -9.31693 -9.12272 -8.99265 -8.87717 -8.38600 -8.33163 -7.26009 -6.08114 -4.08258 0.32300 1.07286 1.23833 1.53729 3.28034 3.29308 3.35075 3.37277 3.48805 3.72756 3.97840 4.10903 4.37449 4.70656 4.76556 4.80076 4.85171 4.90369 5.00008 5.11163 5.22343 5.26279 5.30624 5.33543 5.38540 5.45440 5.58554 5.66565 5.71198 5.75658 5.86405 5.87460 6.03650 6.11658 6.27655 6.30089 6.34585 6.38094 6.47231 6.49216 6.60399 6.69166 6.73401 6.75017 7.01118 7.05556 7.13777 7.38399 7.52846 7.77281 8.03561 8.05737 8.25421 8.51814 8.96002 9.55394 11.01601 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018724 B = 0.002406 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.042787 B =11636.456190 C =12354.626717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.211 3.789 3 H 0.048 0.952 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.532 5.532 13 C 0.050 3.950 14 C 0.072 3.928 15 N -0.472 5.472 16 C 0.370 3.630 17 C -0.251 4.251 18 C 0.164 3.836 19 N -0.541 5.541 20 C 0.382 3.618 21 C -0.045 4.045 22 C -0.069 4.069 23 C -0.131 4.131 24 C -0.103 4.103 25 C -0.134 4.134 26 C -0.071 4.071 27 N -0.548 5.548 28 C 0.064 3.936 29 C 0.061 3.939 30 H 0.013 0.987 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.148 0.852 39 H 0.169 0.831 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.136 0.864 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.039 0.961 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -7.499 21.742 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.105 3.895 3 H 0.066 0.934 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.256 5.256 13 C -0.079 4.079 14 C -0.055 4.055 15 N -0.189 5.189 16 C 0.129 3.871 17 C -0.276 4.276 18 C 0.000 4.000 19 N -0.258 5.258 20 C 0.115 3.885 21 C -0.047 4.047 22 C -0.089 4.089 23 C -0.149 4.149 24 C -0.121 4.121 25 C -0.152 4.152 26 C -0.091 4.091 27 N -0.268 5.268 28 C -0.062 4.062 29 C -0.067 4.067 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.165 0.835 39 H 0.186 0.814 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.154 0.846 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.057 0.943 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.818 -6.861 22.074 23.613 hybrid contribution -0.814 -0.895 -1.547 1.964 sum 4.005 -7.756 20.527 22.306 Atomic orbital electron populations 1.22347 1.01147 0.98967 1.00072 1.19310 0.89330 0.95148 0.85723 0.93433 1.21042 1.35332 1.08246 0.89772 0.91986 1.24919 0.95395 0.94665 0.98991 1.69963 1.45206 1.13862 1.23833 0.86609 0.78658 0.80080 0.82651 1.20674 1.21361 1.19926 1.62562 1.59242 1.01279 1.02520 1.22184 0.98209 0.97697 0.89840 1.22159 0.99097 0.85341 0.98912 1.59075 1.53676 1.05086 1.01014 1.20210 0.85980 0.89431 0.91498 1.22407 1.06962 0.95980 1.02257 1.22933 0.89254 0.99503 0.88271 1.68299 1.16709 1.08234 1.32521 1.21056 0.91419 0.86991 0.88990 1.18102 0.98794 0.93650 0.94179 1.21381 0.95293 0.93064 0.99147 1.21148 0.98660 1.00345 0.94797 1.21327 0.98745 0.94950 0.97111 1.21104 0.99333 0.94912 0.99874 1.21304 0.95031 1.00379 0.92402 1.68324 1.13056 1.39760 1.05698 1.22517 0.99892 0.96793 0.86966 1.22091 0.97403 0.91410 0.95836 0.96751 0.91143 0.94874 0.92921 0.94557 0.90387 0.90070 0.92265 0.83461 0.81424 0.84514 0.85496 0.85900 0.85657 0.84633 0.92707 0.90107 0.94284 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 8.36 37.16 0.31 -3.51 16 2 C 0.21 5.08 2.21 -68.86 -0.15 4.93 16 3 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 4 C -0.51 -13.28 7.94 -34.43 -0.27 -13.55 16 5 H 0.06 1.62 6.58 -52.49 -0.35 1.27 16 6 C 0.06 1.67 5.18 -17.82 -0.09 1.58 16 7 N -0.89 -24.98 12.17 55.43 0.67 -24.31 16 8 Si 0.89 20.79 29.55 -169.99 -5.02 15.77 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.53 -10.87 4.69 -227.87 -1.07 -11.94 16 13 C 0.05 0.88 5.25 -3.77 -0.02 0.86 16 14 C 0.07 1.13 4.80 -3.77 -0.02 1.11 16 15 N -0.47 -7.14 4.73 -172.88 -0.82 -7.96 16 16 C 0.37 5.31 6.41 -154.87 -0.99 4.32 16 17 C -0.25 -2.94 9.30 -39.04 -0.36 -3.30 16 18 C 0.16 1.76 11.28 -17.32 -0.20 1.56 16 19 N -0.54 -6.96 9.44 -11.23 -0.11 -7.07 16 20 C 0.38 5.32 7.56 -156.98 -1.19 4.14 16 21 C -0.05 -0.56 5.88 -104.91 -0.62 -1.18 16 22 C -0.07 -0.79 9.56 -39.24 -0.38 -1.17 16 23 C -0.13 -1.22 10.03 -39.63 -0.40 -1.62 16 24 C -0.10 -0.85 10.04 -39.52 -0.40 -1.24 16 25 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 26 C -0.07 -0.75 9.56 -39.24 -0.38 -1.13 16 27 N -0.55 -8.10 7.88 -10.38 -0.08 -8.18 16 28 C 0.06 0.95 5.37 -3.77 -0.02 0.93 16 29 C 0.06 1.11 4.87 -3.77 -0.02 1.09 16 30 H 0.01 0.29 6.69 -51.93 -0.35 -0.06 16 31 H 0.07 1.79 6.87 -51.93 -0.36 1.43 16 32 H 0.03 0.72 6.35 -51.93 -0.33 0.39 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.04 0.67 6.64 -51.93 -0.34 0.32 16 35 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 36 H 0.08 1.22 7.84 -51.93 -0.41 0.81 16 37 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 38 H 0.15 1.42 7.25 -52.49 -0.38 1.04 16 39 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.14 1.62 7.51 -52.48 -0.39 1.23 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.14 1.35 7.51 -52.49 -0.39 0.95 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.00 6.86 -51.93 -0.36 0.65 16 47 H 0.04 0.73 6.42 -51.93 -0.33 0.39 16 48 H 0.10 1.84 6.35 -51.93 -0.33 1.51 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -29.59 379.21 -13.12 -42.70 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.83 Total: 2.98 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -5.58 Total: -7.72 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -1.40 Total: -59.45 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.59 -13.12 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069966980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.289 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds