Wall clock time and date at job start Tue Mar 31 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39049 * 119.99999 * 2 1 4 4 C 1.39402 * 120.32654 * 0.02562 * 3 2 1 5 5 C 1.38803 * 118.03439 * 179.97438 * 4 3 2 6 6 C 1.38076 * 118.48059 * 359.59146 * 5 4 3 7 7 N 1.32556 * 119.29690 * 0.61706 * 6 5 4 8 8 N 1.28064 * 122.73099 * 359.59857 * 7 6 5 9 9 C 1.50553 * 122.60014 * 180.74719 * 6 5 4 10 10 C 1.52820 * 110.77292 * 339.90747 * 9 6 5 11 11 N 1.47218 * 108.10445 * 47.50395 * 10 9 6 12 12 C 1.34777 * 121.33156 * 115.77411 * 11 10 9 13 13 O 1.21546 * 119.99854 * 4.37422 * 12 11 10 14 14 C 1.47884 * 120.00063 * 184.10412 * 12 11 10 15 15 C 1.39917 * 120.02346 * 137.30517 * 14 12 11 16 16 C 1.38332 * 120.35531 * 180.02562 * 15 14 12 17 17 C 1.37747 * 120.41532 * 359.97438 * 16 15 14 18 18 C 1.40753 * 120.03961 * 359.97438 * 17 16 15 19 19 C 1.41439 * 120.18069 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99929 * 150.91508 * 19 18 17 21 21 C 1.39936 * 119.99630 * 330.91872 * 19 18 17 22 22 N 1.30822 * 120.00360 * 349.31630 * 21 19 18 23 23 Si 1.86798 * 119.99544 * 169.32425 * 21 19 18 24 24 H 1.48499 * 109.47337 * 59.99887 * 23 21 19 25 25 H 1.48508 * 109.47218 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47409 * 299.99436 * 23 21 19 27 27 C 1.38998 * 120.02443 * 317.03653 * 14 12 11 28 28 C 1.46807 * 117.33933 * 296.03739 * 11 10 9 29 29 H 1.09001 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47019 * 299.99480 * 1 2 3 31 31 H 1.08999 * 109.47239 * 59.99571 * 1 2 3 32 32 H 0.96996 * 120.00594 * 180.02562 * 2 1 3 33 33 H 1.08005 * 120.98221 * 359.92984 * 4 3 2 34 34 H 1.08999 * 109.21547 * 219.57598 * 9 6 5 35 35 H 1.08997 * 109.22117 * 100.24376 * 9 6 5 36 36 H 1.08997 * 109.73965 * 287.84122 * 10 9 6 37 37 H 1.08999 * 109.73073 * 167.15059 * 10 9 6 38 38 H 1.07998 * 119.82560 * 0.02562 * 15 14 12 39 39 H 1.08003 * 119.79281 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.98657 * 180.02562 * 17 16 15 41 41 H 0.97003 * 120.00401 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.20160 * 359.97438 * 27 14 12 43 43 H 1.08994 * 109.47083 * 163.95328 * 28 11 10 44 44 H 1.09008 * 109.46965 * 283.94465 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2042 0.0000 4 6 1.4701 2.4154 0.0005 5 6 2.2116 3.5888 0.0011 6 6 3.5893 3.4970 0.0097 7 7 4.1597 2.3004 0.0047 8 7 3.4852 1.2118 -0.0003 9 6 4.4828 4.7085 0.0275 10 6 3.7280 5.9459 -0.4566 11 7 2.4329 5.9941 0.2418 12 6 2.1305 6.9977 1.0890 13 8 2.9004 7.9278 1.2289 14 6 0.8591 6.9703 1.8440 15 6 0.8402 7.3285 3.1964 16 6 -0.3451 7.3048 3.9093 17 6 -1.5201 6.9290 3.2964 18 6 -1.5208 6.5664 1.9364 19 6 -2.7257 6.1806 1.3040 20 1 -2.8593 6.3522 0.2461 21 6 -3.7446 5.5767 2.0491 22 7 -3.5119 5.1787 3.2734 23 14 -5.4372 5.3386 1.2955 24 1 -5.3245 4.4862 0.0848 25 1 -6.3304 4.6803 2.2824 26 1 -6.0021 6.6596 0.9200 27 6 -0.3188 6.5941 1.2091 28 6 1.4863 4.9022 -0.0169 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.9500 -0.8400 -0.0004 33 1 0.3903 2.4401 -0.0002 34 1 5.3388 4.5327 -0.6241 35 1 4.8361 4.8789 1.0445 36 1 3.5640 5.8797 -1.5322 37 1 4.3040 6.8421 -0.2260 38 1 1.7558 7.6251 3.6864 39 1 -0.3492 7.5827 4.9529 40 1 -2.4415 6.9134 3.8595 41 1 -4.2183 4.7604 3.7901 42 1 -0.3096 6.3214 0.1642 43 1 0.7142 4.9007 0.7524 44 1 1.0250 5.0451 -0.9942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071860157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:51 Heat of formation + Delta-G solvation = 54.277148 kcal Electronic energy + Delta-G solvation = -28942.475215 eV Core-core repulsion = 25052.946645 eV Total energy + Delta-G solvation = -3889.528570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.26510 -39.65017 -37.40335 -36.81534 -36.02190 -33.80716 -32.98018 -32.64747 -30.46475 -30.03651 -29.25131 -26.90634 -26.45018 -25.44746 -24.05273 -23.20440 -22.54065 -21.00042 -20.83720 -19.19128 -18.41680 -17.63446 -16.71153 -16.33973 -15.76642 -15.63015 -15.37988 -15.17480 -14.97395 -14.88806 -14.77501 -14.14397 -13.81222 -13.67748 -13.47354 -13.03846 -12.99442 -12.81284 -12.49328 -12.42048 -12.20571 -12.11871 -11.79710 -11.67871 -11.29894 -11.22264 -10.85031 -10.80117 -10.65000 -10.60178 -10.38856 -9.71618 -9.66458 -9.57553 -9.37943 -9.18173 -8.52828 -8.04654 -7.70860 -7.58629 -6.87789 -4.57875 0.88332 1.19716 2.19721 2.62519 2.89960 2.96912 2.98402 3.04178 3.14277 3.50471 3.65602 3.80981 4.26623 4.44908 4.49233 4.59520 4.71029 4.89020 4.96434 5.13791 5.19712 5.24528 5.30699 5.37898 5.47369 5.51294 5.60229 5.63257 5.78475 5.87044 5.94114 6.06165 6.07620 6.25665 6.27273 6.59005 6.64402 6.79789 6.80811 6.91359 7.06767 7.23532 7.35415 7.49361 7.64726 7.79042 7.82879 7.99008 8.39518 8.58633 8.68865 8.71256 8.91659 10.06482 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004556 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.941592 B = 6143.636963 C = 8569.418075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.722 5.722 3 C 0.335 3.665 4 C -0.175 4.175 5 C -0.043 4.043 6 C 0.028 3.972 7 N -0.205 5.205 8 N -0.309 5.309 9 C -0.071 4.071 10 C 0.112 3.888 11 N -0.614 5.614 12 C 0.576 3.424 13 O -0.547 6.547 14 C -0.114 4.114 15 C -0.176 4.176 16 C -0.114 4.114 17 C -0.132 4.132 18 C 0.104 3.896 19 C -0.465 4.465 20 H 0.078 0.922 21 C 0.075 3.925 22 N -0.802 5.802 23 Si 0.910 3.090 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.198 4.198 28 C 0.134 3.866 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.408 0.592 33 H 0.152 0.848 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.282 0.718 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 -7.946 -6.469 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C 0.096 3.904 4 C -0.209 4.209 5 C -0.055 4.055 6 C -0.120 4.120 7 N -0.047 5.047 8 N -0.161 5.161 9 C -0.111 4.111 10 C -0.012 4.012 11 N -0.348 5.348 12 C 0.368 3.632 13 O -0.425 6.425 14 C -0.117 4.117 15 C -0.196 4.196 16 C -0.132 4.132 17 C -0.151 4.151 18 C 0.102 3.898 19 C -0.495 4.495 20 H 0.096 0.904 21 C -0.142 4.142 22 N -0.428 5.428 23 Si 0.735 3.265 24 H -0.190 1.190 25 H -0.203 1.203 26 H -0.188 1.188 27 C -0.219 4.219 28 C 0.011 3.989 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.170 0.830 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.154 0.846 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.723 -8.432 -6.192 11.924 hybrid contribution -2.106 0.037 -0.224 2.118 sum 3.618 -8.394 -6.416 11.168 Atomic orbital electron populations 1.21705 0.78390 1.03218 1.02126 1.44051 1.05939 1.04656 1.80943 1.19973 0.91052 0.87340 0.92056 1.21695 1.02137 0.90601 1.06476 1.20689 0.94013 0.96643 0.94117 1.22080 0.92108 0.95539 1.02283 1.72774 1.30418 0.94469 1.07058 1.72792 1.03961 1.20460 1.18846 1.20531 0.97004 0.89778 1.03768 1.21579 0.84743 0.98570 0.96259 1.47950 1.17051 1.24200 1.45567 1.18910 0.86594 0.80474 0.77174 1.90684 1.51986 1.34169 1.65612 1.19255 0.91585 1.06008 0.94873 1.20384 0.97559 1.08698 0.92971 1.20705 0.93197 1.01185 0.98113 1.21600 0.97137 1.00167 0.96231 1.17526 0.91653 0.88720 0.91928 1.19498 0.98282 1.35152 0.96524 0.90356 1.25859 1.00456 0.93306 0.94536 1.69748 1.34388 1.29198 1.09455 0.86333 0.81047 0.79576 0.79587 1.19021 1.20330 1.18831 1.21280 0.91753 1.09592 0.99226 1.20986 0.92160 0.81250 1.04506 0.90034 0.91926 0.92263 0.75673 0.83047 0.88692 0.89505 0.90935 0.87818 0.88472 0.88506 0.85795 0.90712 0.87852 0.84580 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 9.96 59.84 0.60 1.31 16 2 N -0.72 -7.44 5.89 -67.09 -0.39 -7.83 16 3 C 0.34 4.60 7.76 -154.78 -1.20 3.40 16 4 C -0.18 -2.38 9.06 -38.94 -0.35 -2.74 16 5 C -0.04 -0.63 5.81 -104.79 -0.61 -1.24 16 6 C 0.03 0.42 6.71 -82.41 -0.55 -0.14 16 7 N -0.20 -3.29 11.36 33.55 0.38 -2.91 16 8 N -0.31 -4.85 11.52 31.22 0.36 -4.49 16 9 C -0.07 -0.90 6.12 -28.05 -0.17 -1.08 16 10 C 0.11 1.47 6.43 -3.74 -0.02 1.45 16 11 N -0.61 -9.95 2.95 -175.82 -0.52 -10.46 16 12 C 0.58 11.47 7.34 -12.31 -0.09 11.38 16 13 O -0.55 -12.06 16.45 5.33 0.09 -11.97 16 14 C -0.11 -2.45 5.21 -105.04 -0.55 -3.00 16 15 C -0.18 -3.86 9.67 -38.92 -0.38 -4.23 16 16 C -0.11 -2.49 10.01 -39.73 -0.40 -2.89 16 17 C -0.13 -3.13 8.65 -38.81 -0.34 -3.46 16 18 C 0.10 2.47 5.54 -106.87 -0.59 1.88 16 19 C -0.46 -10.93 9.06 -37.73 -0.34 -11.27 16 20 H 0.08 1.76 7.87 -52.48 -0.41 1.34 16 21 C 0.08 1.70 5.25 -17.35 -0.09 1.61 16 22 N -0.80 -18.83 10.85 55.55 0.60 -18.22 16 23 Si 0.91 16.99 29.57 -169.99 -5.03 11.97 16 24 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 25 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 27 C -0.20 -4.26 7.13 -38.44 -0.27 -4.54 16 28 C 0.13 1.99 4.69 -5.34 -0.03 1.97 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.55 7.97 -51.93 -0.41 0.13 16 31 H 0.06 0.45 7.97 -51.93 -0.41 0.03 16 32 H 0.41 3.59 8.95 -40.82 -0.37 3.23 16 33 H 0.15 1.80 6.86 -52.48 -0.36 1.44 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.40 7.07 -51.93 -0.37 1.04 16 38 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 40 H 0.12 3.04 6.23 -52.49 -0.33 2.71 16 41 H 0.28 6.09 8.30 -40.82 -0.34 5.76 16 42 H 0.10 2.00 6.30 -52.49 -0.33 1.67 16 43 H 0.14 2.31 4.78 -51.93 -0.25 2.07 16 44 H 0.09 1.16 8.01 -51.92 -0.42 0.74 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -29.07 363.29 -9.75 -38.81 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.33 Total: 11.23 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -5.39 Total: -11.59 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.43 Total: -43.93 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.07 -9.75 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071860157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.090 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds