Wall clock time and date at job start Tue Mar 31 2020 04:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21271 * 120.00242 * 2 1 4 4 N 1.34785 * 119.99834 * 179.97438 * 2 1 3 5 5 C 1.47422 * 125.64633 * 4.93658 * 4 2 1 6 6 C 1.54909 * 104.83154 * 155.83359 * 5 4 2 7 7 C 1.55164 * 101.58184 * 37.00929 * 6 5 4 8 8 C 1.47016 * 125.64921 * 184.89304 * 4 2 1 9 9 H 1.08997 * 109.88375 * 300.52287 * 8 4 2 10 10 C 1.53011 * 109.88111 * 61.52702 * 8 4 2 11 11 H 1.09007 * 110.36390 * 308.55800 * 10 8 4 12 12 C 1.54377 * 110.41031 * 186.21382 * 10 8 4 13 13 C 1.54258 * 105.05619 * 217.36729 * 12 10 8 14 14 C 1.54384 * 105.06210 * 359.97438 * 13 12 10 15 15 N 1.48551 * 110.40976 * 71.03461 * 10 8 4 16 16 C 1.46898 * 111.00288 * 277.81719 * 15 10 8 17 17 C 1.50703 * 109.47308 * 173.00620 * 16 15 10 18 18 O 1.21280 * 119.99800 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00045 * 179.97438 * 17 16 15 20 20 C 1.46505 * 120.00035 * 0.02562 * 19 17 16 21 21 C 1.46503 * 119.99943 * 180.02562 * 19 17 16 22 22 C 1.50698 * 109.47124 * 90.00217 * 21 19 17 23 23 H 1.07999 * 119.99892 * 359.97438 * 22 21 19 24 24 C 1.37877 * 120.00004 * 180.02562 * 22 21 19 25 25 N 1.31515 * 119.99945 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00199 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46909 * 60.00120 * 26 24 22 28 28 H 1.48500 * 109.47419 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47167 * 300.00321 * 26 24 22 30 30 H 1.08997 * 109.47206 * 270.00597 * 1 2 3 31 31 H 1.09001 * 109.46956 * 30.00718 * 1 2 3 32 32 H 1.08999 * 109.47293 * 150.00366 * 1 2 3 33 33 H 1.08996 * 110.36838 * 274.67280 * 5 4 2 34 34 H 1.08999 * 110.36753 * 37.00025 * 5 4 2 35 35 H 1.08998 * 111.00587 * 155.08381 * 6 5 4 36 36 H 1.09002 * 111.00740 * 278.89819 * 6 5 4 37 37 H 1.08995 * 110.72305 * 206.13617 * 7 6 5 38 38 H 1.09006 * 110.71794 * 82.85734 * 7 6 5 39 39 H 1.08998 * 110.32048 * 336.25757 * 12 10 8 40 40 H 1.08998 * 110.32639 * 98.47166 * 12 10 8 41 41 H 1.09004 * 110.32535 * 118.89309 * 13 12 10 42 42 H 1.09002 * 110.32403 * 241.09886 * 13 12 10 43 43 H 1.08998 * 110.41111 * 142.63418 * 14 13 12 44 44 H 1.09000 * 110.40634 * 264.95569 * 14 13 12 45 45 H 1.08998 * 109.47417 * 293.01241 * 16 15 10 46 46 H 1.09002 * 109.46935 * 53.00805 * 16 15 10 47 47 H 1.09000 * 109.46692 * 89.99881 * 20 19 17 48 48 H 1.09004 * 109.47010 * 209.99524 * 20 19 17 49 49 H 1.08997 * 109.47076 * 330.00016 * 20 19 17 50 50 H 1.09003 * 109.47058 * 209.99866 * 21 19 17 51 51 H 1.08998 * 109.47057 * 330.00174 * 21 19 17 52 52 H 0.97003 * 119.99988 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5768 -2.5081 -0.1020 6 6 2.7021 -3.4076 -0.6716 7 6 3.9547 -2.8234 0.0336 8 6 3.6401 -1.3142 0.1025 9 1 4.1236 -0.7965 -0.7259 10 6 4.1295 -0.7376 1.4327 11 1 3.7481 0.2742 1.5707 12 6 5.6723 -0.7436 1.4870 13 6 6.0204 -1.0946 2.9482 14 6 4.6587 -1.2706 3.6539 15 7 3.7117 -1.6097 2.5603 16 6 2.3259 -1.3282 2.9582 17 6 1.8815 -2.3412 3.9817 18 8 2.6442 -3.2116 4.3443 19 7 0.6368 -2.2792 4.4948 20 6 -0.2844 -1.2274 4.0571 21 6 0.2049 -3.2636 5.4902 22 6 0.5277 -2.7557 6.8718 23 1 1.0070 -1.7959 6.9959 24 6 0.2121 -3.5169 7.9772 25 7 -0.3711 -4.6859 7.8259 26 14 0.6129 -2.8877 9.6898 27 1 -0.0959 -1.6040 9.9239 28 1 0.1762 -3.8860 10.6987 29 1 2.0775 -2.6732 9.8082 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5140 32 1 -0.3634 -0.8900 -0.5138 33 1 1.2697 -2.8621 0.8821 34 1 0.7252 -2.4896 -0.7821 35 1 2.5476 -4.4500 -0.3932 36 1 2.7771 -3.3013 -1.7538 37 1 4.8508 -3.0039 -0.5601 38 1 4.0635 -3.2408 1.0347 39 1 6.0719 -1.4991 0.8106 40 1 6.0640 0.2407 1.2305 41 1 6.5911 -2.0225 2.9890 42 1 6.5831 -0.2826 3.4089 43 1 4.7084 -2.0830 4.3788 44 1 4.3616 -0.3431 4.1434 45 1 2.2671 -0.3281 3.3874 46 1 1.6778 -1.3869 2.0837 47 1 -0.8535 -1.5781 3.1961 48 1 -0.9687 -0.9825 4.8695 49 1 0.2834 -0.3393 3.7800 50 1 -0.8702 -3.4209 5.4029 51 1 0.7252 -4.2059 5.3187 52 1 -0.5928 -5.2216 8.6037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071880493.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:28 Heat of formation + Delta-G solvation = -48.344411 kcal Electronic energy + Delta-G solvation = -32230.574541 eV Core-core repulsion = 28230.546052 eV Total energy + Delta-G solvation = -4000.028489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.86131 -39.11648 -38.16321 -36.97625 -34.73410 -32.80911 -32.38504 -31.84049 -30.93689 -29.26372 -28.22093 -26.89803 -26.34427 -25.31687 -23.55087 -22.60946 -21.79049 -20.95212 -20.32405 -18.86748 -18.38600 -17.19242 -16.69559 -16.46631 -16.17905 -16.02000 -15.56043 -14.94787 -14.90010 -14.75995 -14.39736 -14.19810 -13.96671 -13.49190 -13.37222 -13.05340 -13.01679 -12.76604 -12.55146 -12.36684 -12.29996 -12.21270 -12.00923 -11.91097 -11.78835 -11.52937 -11.32215 -11.25551 -11.17435 -11.02044 -10.95558 -10.81015 -10.68806 -10.56478 -10.40394 -10.14913 -9.92947 -9.64174 -9.01361 -8.64258 -8.43571 -8.21276 -7.62412 -6.04593 -4.09287 2.48467 2.84231 3.31199 3.35676 3.37701 3.48544 3.70635 4.20319 4.38204 4.41915 4.46355 4.65762 4.73719 4.75862 4.87191 4.99361 5.07621 5.13196 5.21492 5.23588 5.25932 5.28441 5.32076 5.39603 5.42150 5.53281 5.62703 5.63737 5.65949 5.68285 5.73427 5.79617 5.85123 5.86067 5.89022 5.89533 6.03425 6.15907 6.16802 6.26110 6.37441 6.44483 6.93644 6.98643 7.15235 7.38992 7.44737 7.55752 7.92101 8.01876 8.23656 8.43988 8.90708 9.15308 9.55999 11.03307 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.003728 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.444685 B = 7508.134210 C = 8265.589428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.523 3.477 3 O -0.547 6.547 4 N -0.614 5.614 5 C 0.097 3.903 6 C -0.130 4.130 7 C -0.127 4.127 8 C 0.153 3.847 9 H 0.075 0.925 10 C 0.047 3.953 11 H 0.063 0.937 12 C -0.114 4.114 13 C -0.121 4.121 14 C 0.033 3.967 15 N -0.475 5.475 16 C 0.021 3.979 17 C 0.507 3.493 18 O -0.522 6.522 19 N -0.606 5.606 20 C 0.084 3.916 21 C 0.248 3.752 22 C -0.526 4.526 23 H 0.055 0.945 24 C 0.062 3.938 25 N -0.895 5.895 26 Si 0.897 3.103 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.277 1.277 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.037 0.963 45 H 0.052 0.948 46 H 0.100 0.900 47 H 0.042 0.958 48 H 0.075 0.925 49 H 0.051 0.949 50 H 0.031 0.969 51 H 0.044 0.956 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 6.622 -19.386 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.313 3.687 3 O -0.425 6.425 4 N -0.349 5.349 5 C -0.026 4.026 6 C -0.168 4.168 7 C -0.164 4.164 8 C 0.050 3.950 9 H 0.093 0.907 10 C -0.063 4.063 11 H 0.081 0.919 12 C -0.152 4.152 13 C -0.159 4.159 14 C -0.094 4.094 15 N -0.199 5.199 16 C -0.111 4.111 17 C 0.292 3.708 18 O -0.398 6.398 19 N -0.340 5.340 20 C -0.061 4.061 21 C 0.129 3.871 22 C -0.565 4.565 23 H 0.073 0.927 24 C -0.140 4.140 25 N -0.534 5.534 26 Si 0.725 3.275 27 H -0.203 1.203 28 H -0.211 1.211 29 H -0.202 1.202 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.118 0.882 47 H 0.061 0.939 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.048 0.952 51 H 0.062 0.938 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.507 6.054 -19.216 20.886 hybrid contribution -0.202 1.324 1.304 1.869 sum 5.305 7.378 -17.912 20.085 Atomic orbital electron populations 1.21972 0.91545 1.04837 1.05110 1.20506 0.90376 0.82132 0.75661 1.90710 1.70760 1.30714 1.50334 1.48742 1.07736 1.06101 1.72308 1.22445 0.96694 0.81899 1.01550 1.22723 0.94727 0.99594 0.99794 1.22736 0.97196 0.92756 1.03755 1.21553 0.80191 0.97289 0.96010 0.90657 1.23000 0.95492 0.95810 0.91967 0.91863 1.22248 0.93759 1.01621 0.97607 1.22272 0.97187 1.01703 0.94771 1.23193 0.91223 1.00542 0.94477 1.65091 1.00692 1.49105 1.05053 1.22426 0.92294 0.97201 0.99195 1.20109 0.82268 0.86060 0.82329 1.90648 1.52172 1.36468 1.60523 1.48153 1.12290 1.31003 1.42529 1.21620 0.94176 0.90362 0.99906 1.19244 0.95159 0.87625 0.85054 1.21386 1.39664 1.04510 0.90928 0.92712 1.24917 0.95055 0.94777 0.99239 1.69919 1.41616 1.11315 1.30525 0.86581 0.78905 0.78424 0.83638 1.20298 1.21139 1.20219 0.88569 0.88914 0.90053 0.90585 0.90638 0.89634 0.91163 0.90841 0.87179 0.90784 0.91457 0.90841 0.91648 0.88309 0.94482 0.93025 0.88249 0.93932 0.90669 0.92999 0.95151 0.93830 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.95 36.01 0.36 -1.10 16 2 C 0.52 6.28 6.81 -10.98 -0.07 6.21 16 3 O -0.55 -8.61 16.28 5.57 0.09 -8.52 16 4 N -0.61 -6.71 1.72 -163.02 -0.28 -6.99 16 5 C 0.10 0.89 6.11 -2.53 -0.02 0.87 16 6 C -0.13 -1.09 7.09 -24.58 -0.17 -1.27 16 7 C -0.13 -1.25 5.51 -24.89 -0.14 -1.39 16 8 C 0.15 1.71 2.65 -66.95 -0.18 1.53 16 9 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 10 C 0.05 0.59 2.14 -66.07 -0.14 0.45 16 11 H 0.06 0.95 6.73 -51.93 -0.35 0.60 16 12 C -0.11 -1.22 6.42 -25.35 -0.16 -1.39 16 13 C -0.12 -1.42 7.00 -25.35 -0.18 -1.60 16 14 C 0.03 0.51 5.84 -2.17 -0.01 0.49 16 15 N -0.48 -7.07 3.19 -223.54 -0.71 -7.78 16 16 C 0.02 0.33 3.78 -4.98 -0.02 0.31 16 17 C 0.51 10.46 7.49 -10.99 -0.08 10.37 16 18 O -0.52 -12.87 14.56 5.56 0.08 -12.78 16 19 N -0.61 -12.71 2.86 -182.95 -0.52 -13.23 16 20 C 0.08 1.32 10.24 59.85 0.61 1.93 16 21 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 22 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 23 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 24 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 26 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.51 6.51 -51.93 -0.34 0.17 16 33 H 0.08 0.84 7.04 -51.93 -0.37 0.47 16 34 H 0.08 0.53 6.87 -51.93 -0.36 0.17 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.11 1.39 6.66 -51.93 -0.35 1.04 16 39 H 0.07 0.70 7.21 -51.93 -0.37 0.33 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 1.79 7.02 -51.93 -0.36 1.43 16 44 H 0.04 0.58 7.80 -51.93 -0.41 0.17 16 45 H 0.05 0.84 7.10 -51.93 -0.37 0.47 16 46 H 0.10 1.41 3.53 -51.93 -0.18 1.22 16 47 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 49 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 50 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 51 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 52 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 397.78 15.07 5.99 5.99 Total: -1.00 -34.50 397.78 -9.07 -43.57 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.78 Total: 0.30 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.65 Total: 8.31 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.78 Total: -53.74 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.17 Total: -21.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.50 -9.07 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071880493.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.778 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds