Wall clock time and date at job start Tue Mar 31 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21285 * 120.00589 * 2 1 4 4 N 1.34787 * 120.00042 * 180.02562 * 2 1 3 5 5 C 1.47425 * 125.64318 * 359.94582 * 4 2 1 6 6 C 1.54903 * 104.83051 * 155.91873 * 5 4 2 7 7 C 1.55162 * 101.58322 * 37.00943 * 6 5 4 8 8 C 1.47019 * 125.64880 * 179.97438 * 4 2 1 9 9 H 1.08996 * 110.01002 * 300.49826 * 8 4 2 10 10 C 1.53001 * 109.88311 * 61.59576 * 8 4 2 11 11 H 1.08995 * 110.42221 * 294.57474 * 10 8 4 12 12 C 1.54909 * 110.37328 * 56.88619 * 10 8 4 13 13 C 1.55135 * 101.65394 * 155.89975 * 12 10 8 14 14 C 1.54312 * 103.01998 * 324.34364 * 13 12 10 15 15 N 1.47445 * 107.23425 * 22.28359 * 14 13 12 16 16 C 1.46901 * 110.99993 * 123.25650 * 15 14 13 17 17 C 1.50693 * 109.47068 * 76.16220 * 16 15 14 18 18 O 1.21282 * 120.00261 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99816 * 179.97438 * 17 16 15 20 20 C 1.46498 * 120.00251 * 359.97438 * 19 17 16 21 21 C 1.46503 * 119.99849 * 179.97438 * 19 17 16 22 22 C 1.50707 * 109.47250 * 90.00102 * 21 19 17 23 23 H 1.08000 * 119.99876 * 359.97438 * 22 21 19 24 24 C 1.37875 * 120.00066 * 180.02562 * 22 21 19 25 25 N 1.31518 * 119.99879 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99892 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46912 * 59.99768 * 26 24 22 28 28 H 1.48502 * 109.46984 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47303 * 299.99787 * 26 24 22 30 30 H 1.08997 * 109.47702 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47203 * 300.00084 * 1 2 3 32 32 H 1.08998 * 109.46860 * 59.99224 * 1 2 3 33 33 H 1.08991 * 110.36863 * 37.07811 * 5 4 2 34 34 H 1.09005 * 110.45761 * 274.80085 * 5 4 2 35 35 H 1.09002 * 111.00646 * 278.93449 * 6 5 4 36 36 H 1.09002 * 111.04221 * 155.09400 * 6 5 4 37 37 H 1.08995 * 110.72092 * 206.13754 * 7 6 5 38 38 H 1.08994 * 110.72066 * 82.85819 * 7 6 5 39 39 H 1.08997 * 110.99163 * 37.80313 * 12 10 8 40 40 H 1.09007 * 110.98731 * 273.99232 * 12 10 8 41 41 H 1.09000 * 110.70367 * 205.95988 * 13 12 10 42 42 H 1.09005 * 110.70541 * 82.72867 * 13 12 10 43 43 H 1.09001 * 109.89260 * 262.88217 * 14 13 12 44 44 H 1.09002 * 109.89506 * 141.68791 * 14 13 12 45 45 H 1.09003 * 109.47096 * 316.15805 * 16 15 14 46 46 H 1.08999 * 109.47039 * 196.16353 * 16 15 14 47 47 H 1.09002 * 109.46556 * 90.00626 * 20 19 17 48 48 H 1.08999 * 109.47268 * 209.99459 * 20 19 17 49 49 H 1.08994 * 109.47476 * 330.00437 * 20 19 17 50 50 H 1.09001 * 109.47434 * 209.99810 * 21 19 17 51 51 H 1.08997 * 109.47291 * 330.00330 * 21 19 17 52 52 H 0.96999 * 119.99484 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5729 -2.5103 0.0000 6 6 2.6543 -3.4353 -0.6118 7 6 3.9548 -2.8234 -0.0272 8 6 3.6439 -1.3120 -0.0011 9 1 4.0659 -0.8312 -0.8836 10 6 4.2296 -0.6824 1.2644 11 1 4.0647 0.3950 1.2645 12 6 3.6013 -1.3242 2.5265 13 6 4.6981 -1.0603 3.5914 14 6 6.0065 -1.2061 2.7864 15 7 5.6737 -0.9822 1.3675 16 6 6.4795 0.1089 0.8036 17 6 7.8788 -0.3843 0.5401 18 8 8.1758 -1.5317 0.7973 19 7 8.8003 0.4497 0.0187 20 6 8.4414 1.8355 -0.2924 21 6 10.1608 -0.0297 -0.2369 22 6 10.2426 -0.5878 -1.6344 23 1 9.3684 -0.5860 -2.2686 24 6 11.4331 -1.1017 -2.1030 25 7 12.4975 -1.1043 -1.3305 26 14 11.5342 -1.7941 -3.8350 27 1 11.1923 -0.7309 -4.8138 28 1 12.9134 -2.2799 -4.0941 29 1 10.5776 -2.9213 -3.9741 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 0.6733 -2.5197 -0.6153 34 1 1.3387 -2.8221 1.0179 35 1 2.6493 -3.3756 -1.7002 36 1 2.5229 -4.4648 -0.2786 37 1 4.8047 -3.0308 -0.6773 38 1 4.1380 -3.1972 0.9801 39 1 3.4446 -2.3934 2.3840 40 1 2.6691 -0.8268 2.7945 41 1 4.6500 -1.8041 4.3867 42 1 4.6060 -0.0531 3.9981 43 1 6.4132 -2.2088 2.9180 44 1 6.7314 -0.4630 3.1188 45 1 6.5135 0.9382 1.5102 46 1 6.0311 0.4462 -0.1309 47 1 8.6308 2.4639 0.5778 48 1 9.0418 2.1867 -1.1316 49 1 7.3847 1.8871 -0.5548 50 1 10.8629 0.7978 -0.1346 51 1 10.4120 -0.8102 0.4812 52 1 13.3350 -1.4662 -1.6601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071880496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:41 Heat of formation + Delta-G solvation = -51.170623 kcal Electronic energy + Delta-G solvation = -31191.584596 eV Core-core repulsion = 27191.433554 eV Total energy + Delta-G solvation = -4000.151043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -40.75903 -39.25896 -38.15562 -37.06319 -34.63251 -32.64533 -32.24785 -31.94790 -31.01786 -29.29491 -28.15342 -26.99555 -26.31451 -25.26613 -23.60980 -22.50885 -22.03263 -21.04648 -20.25399 -18.73853 -18.25930 -17.17188 -16.69655 -16.51187 -16.19567 -16.03266 -15.60385 -15.21455 -14.80555 -14.74813 -14.35295 -14.06989 -13.94545 -13.50422 -13.39882 -13.14204 -12.99874 -12.91428 -12.62712 -12.40149 -12.29390 -12.14930 -12.07714 -11.94796 -11.74002 -11.53319 -11.30201 -11.21120 -11.15093 -11.12584 -10.94381 -10.84255 -10.77312 -10.50299 -10.36536 -10.09894 -9.99820 -9.57163 -8.95034 -8.72032 -8.38005 -8.06066 -7.53018 -5.98796 -4.03130 2.43884 2.74643 3.35679 3.39465 3.42406 3.57389 3.78347 4.22472 4.31067 4.37187 4.49718 4.60047 4.64776 4.69247 4.81039 4.92727 4.97343 5.08899 5.10433 5.14080 5.24384 5.30765 5.33711 5.37007 5.43421 5.50081 5.50784 5.56707 5.65874 5.67926 5.70556 5.79009 5.81618 5.82958 5.92529 5.99688 6.00449 6.06488 6.24220 6.27834 6.29119 6.36975 7.00690 7.09968 7.22949 7.35504 7.51210 7.64151 7.98490 7.98742 8.30323 8.53377 8.97511 9.24608 9.61916 11.09233 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.003072 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.158223 B = 9113.845308 C = 9654.275286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.523 3.477 3 O -0.545 6.545 4 N -0.612 5.612 5 C 0.099 3.901 6 C -0.139 4.139 7 C -0.112 4.112 8 C 0.152 3.848 9 H 0.075 0.925 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.117 4.117 13 C -0.144 4.144 14 C 0.055 3.945 15 N -0.500 5.500 16 C 0.034 3.966 17 C 0.506 3.494 18 O -0.522 6.522 19 N -0.607 5.607 20 C 0.084 3.916 21 C 0.248 3.752 22 C -0.524 4.524 23 H 0.056 0.944 24 C 0.060 3.940 25 N -0.897 5.897 26 Si 0.898 3.102 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.030 0.970 51 H 0.043 0.957 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.895 -0.321 6.574 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.313 3.687 3 O -0.422 6.422 4 N -0.347 5.347 5 C -0.023 4.023 6 C -0.177 4.177 7 C -0.150 4.150 8 C 0.048 3.952 9 H 0.093 0.907 10 C -0.046 4.046 11 H 0.085 0.915 12 C -0.155 4.155 13 C -0.182 4.182 14 C -0.073 4.073 15 N -0.225 5.225 16 C -0.097 4.097 17 C 0.291 3.709 18 O -0.397 6.397 19 N -0.341 5.341 20 C -0.060 4.060 21 C 0.129 3.871 22 C -0.563 4.563 23 H 0.074 0.926 24 C -0.141 4.141 25 N -0.536 5.536 26 Si 0.725 3.275 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.202 1.202 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.048 0.952 51 H 0.061 0.939 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.112 -0.781 6.422 25.932 hybrid contribution -0.017 0.550 -0.653 0.854 sum -25.129 -0.231 5.769 25.783 Atomic orbital electron populations 1.21892 0.91755 1.04235 1.05135 1.20480 0.90222 0.82237 0.75785 1.90732 1.70597 1.30715 1.50196 1.48678 1.07202 1.05803 1.73049 1.22364 0.96899 0.82136 1.00942 1.22856 0.94916 0.98896 1.00998 1.22581 0.97251 0.92121 1.03040 1.21401 0.78987 0.97223 0.97574 0.90719 1.22830 0.87884 0.99141 0.94707 0.91513 1.22682 0.97509 1.01360 0.93952 1.22834 0.95487 1.01648 0.98246 1.22768 0.95759 1.02850 0.85885 1.62983 1.01898 1.40424 1.17155 1.22255 0.93961 0.92655 1.00845 1.20132 0.85863 0.86160 0.78706 1.90650 1.80012 1.17546 1.51502 1.48161 1.13711 1.10400 1.61858 1.21611 1.00175 0.83690 1.00535 1.19235 0.75664 0.95359 0.96882 1.21418 0.96006 1.40049 0.98792 0.92553 1.24933 0.95557 0.95781 0.97859 1.69929 1.01009 1.46279 1.36370 0.86567 0.77015 0.79500 0.84383 1.20301 1.21221 1.20163 0.90506 0.88864 0.88869 0.90607 0.91260 0.90675 0.89815 0.89348 0.89679 0.90299 0.91666 0.90786 0.91842 0.89747 0.92929 0.92534 0.88878 0.93969 0.90801 0.92678 0.95200 0.93928 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.19 36.00 0.37 -0.72 16 2 C 0.52 5.74 7.75 -10.98 -0.09 5.65 16 3 O -0.54 -8.39 16.24 5.55 0.09 -8.30 16 4 N -0.61 -6.05 2.62 -163.02 -0.43 -6.48 16 5 C 0.10 0.65 6.39 -2.53 -0.02 0.64 16 6 C -0.14 -1.03 7.08 -24.58 -0.17 -1.21 16 7 C -0.11 -1.21 5.72 -24.89 -0.14 -1.35 16 8 C 0.15 1.84 2.96 -66.95 -0.20 1.64 16 9 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 10 C 0.06 0.82 2.01 -66.18 -0.13 0.69 16 11 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 12 C -0.12 -1.23 5.88 -24.59 -0.14 -1.38 16 13 C -0.14 -1.55 6.94 -24.91 -0.17 -1.73 16 14 C 0.05 0.78 6.02 -2.84 -0.02 0.76 16 15 N -0.50 -7.60 3.88 -224.82 -0.87 -8.47 16 16 C 0.03 0.57 3.64 -4.98 -0.02 0.55 16 17 C 0.51 10.92 7.51 -10.99 -0.08 10.84 16 18 O -0.52 -13.34 15.45 5.56 0.09 -13.25 16 19 N -0.61 -13.44 2.86 -182.96 -0.52 -13.97 16 20 C 0.08 1.43 10.24 59.85 0.61 2.04 16 21 C 0.25 6.68 5.16 -5.19 -0.03 6.66 16 22 C -0.52 -15.25 9.39 -34.44 -0.32 -15.57 16 23 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 25 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 26 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.08 0.32 6.09 -51.93 -0.32 0.00 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.35 6.94 -51.93 -0.36 -0.01 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 0.94 5.95 -51.93 -0.31 0.63 16 39 H 0.08 0.77 6.04 -51.93 -0.31 0.46 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.05 0.78 7.36 -51.93 -0.38 0.40 16 45 H 0.06 0.85 7.72 -51.93 -0.40 0.44 16 46 H 0.09 1.48 7.24 -51.93 -0.38 1.11 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 49 H 0.05 0.80 6.44 -51.93 -0.33 0.47 16 50 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 51 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 52 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -35.90 405.44 -9.46 -45.36 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.98 Total: -1.01 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.65 Total: 9.17 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -1.09 Total: -55.36 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.18 Total: -21.55 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.90 -9.46 -45.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071880496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.814 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds