Wall clock time and date at job start Tue Mar 31 2020 04:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21276 * 119.99990 * 2 1 4 4 N 1.34771 * 119.99607 * 179.97438 * 2 1 3 5 5 C 1.47430 * 125.65394 * 0.05137 * 4 2 1 6 6 C 1.54905 * 104.83179 * 204.09028 * 5 4 2 7 7 C 1.55164 * 101.58199 * 322.98536 * 6 5 4 8 8 C 1.47023 * 125.64710 * 179.97438 * 4 2 1 9 9 H 1.08998 * 109.88179 * 59.41127 * 8 4 2 10 10 C 1.52996 * 109.88577 * 298.40177 * 8 4 2 11 11 H 1.09004 * 110.42083 * 56.27031 * 10 8 4 12 12 C 1.54907 * 110.37801 * 178.58550 * 10 8 4 13 13 C 1.55145 * 101.65545 * 155.89622 * 12 10 8 14 14 C 1.54322 * 103.01712 * 324.35065 * 13 12 10 15 15 N 1.47434 * 107.23412 * 22.28112 * 14 13 12 16 16 C 1.46897 * 111.00070 * 123.26186 * 15 14 13 17 17 C 1.50702 * 109.47331 * 75.77573 * 16 15 14 18 18 O 1.21281 * 119.99719 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00053 * 180.02562 * 17 16 15 20 20 C 1.46500 * 119.99940 * 359.97438 * 19 17 16 21 21 C 1.46504 * 119.99963 * 179.97438 * 19 17 16 22 22 C 1.50699 * 109.46688 * 89.99872 * 21 19 17 23 23 H 1.08000 * 120.00441 * 0.02562 * 22 21 19 24 24 C 1.37884 * 119.99906 * 179.97438 * 22 21 19 25 25 N 1.31506 * 120.00022 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99679 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47188 * 89.99750 * 26 24 22 28 28 H 1.48503 * 109.46757 * 209.99833 * 26 24 22 29 29 H 1.48499 * 109.47051 * 329.99400 * 26 24 22 30 30 H 1.08992 * 109.47188 * 239.99973 * 1 2 3 31 31 H 1.09002 * 109.46854 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47140 * 119.99721 * 1 2 3 33 33 H 1.08999 * 110.36192 * 322.92800 * 5 4 2 34 34 H 1.08997 * 110.37024 * 85.13743 * 5 4 2 35 35 H 1.08997 * 111.00849 * 81.06136 * 6 5 4 36 36 H 1.09005 * 111.00163 * 204.87903 * 6 5 4 37 37 H 1.09001 * 110.71979 * 277.14042 * 7 6 5 38 38 H 1.08998 * 110.71650 * 153.86787 * 7 6 5 39 39 H 1.09001 * 110.98609 * 37.80567 * 12 10 8 40 40 H 1.09000 * 111.02141 * 274.00403 * 12 10 8 41 41 H 1.08991 * 110.70712 * 205.96389 * 13 12 10 42 42 H 1.09006 * 110.85305 * 82.79792 * 13 12 10 43 43 H 1.09002 * 109.87924 * 262.87357 * 14 13 12 44 44 H 1.09002 * 109.88731 * 141.68926 * 14 13 12 45 45 H 1.09010 * 109.46967 * 315.77534 * 16 15 14 46 46 H 1.09001 * 109.47677 * 195.78042 * 16 15 14 47 47 H 1.09004 * 109.47031 * 90.00650 * 20 19 17 48 48 H 1.09000 * 109.46966 * 209.99764 * 20 19 17 49 49 H 1.08998 * 109.47438 * 330.00288 * 20 19 17 50 50 H 1.09000 * 109.47159 * 209.99655 * 21 19 17 51 51 H 1.08995 * 109.47174 * 330.00268 * 21 19 17 52 52 H 0.97001 * 119.99682 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5730 -2.5103 0.0000 6 6 2.6544 -3.4352 0.6121 7 6 3.9549 -2.8233 0.0275 8 6 3.6439 -1.3120 0.0001 9 1 4.0645 -0.8288 0.8819 10 6 4.2287 -0.6830 -1.2662 11 1 3.9260 0.3610 -1.3470 12 6 5.7735 -0.7978 -1.2615 13 6 6.0980 -0.7217 -2.7767 14 6 4.9148 -1.4720 -3.4237 15 7 3.7977 -1.4379 -2.4621 16 6 2.6027 -0.8322 -3.0646 17 6 1.9577 -1.8196 -4.0027 18 8 2.4452 -2.9198 -4.1541 19 7 0.8391 -1.4801 -4.6735 20 6 0.2499 -0.1513 -4.4902 21 6 0.2123 -2.4397 -5.5859 22 6 -0.7948 -3.2675 -4.8298 23 1 -0.9526 -3.0956 -3.7753 24 6 -1.5157 -4.2436 -5.4846 25 7 -2.3942 -4.9662 -4.8248 26 14 -1.2433 -4.5404 -7.3087 27 1 -0.1756 -5.5562 -7.4909 28 1 -2.5030 -5.0304 -7.9239 29 1 -0.8351 -3.2705 -7.9613 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 0.6733 -2.5197 0.6154 34 1 1.3384 -2.8203 -1.0183 35 1 2.6494 -3.3754 1.7004 36 1 2.5222 -4.4646 0.2789 37 1 4.1382 -3.1973 -0.9798 38 1 4.8048 -3.0307 0.6776 39 1 6.0929 -1.7514 -0.8411 40 1 6.2258 0.0350 -0.7230 41 1 7.0395 -1.2256 -2.9949 42 1 6.1292 0.3139 -3.1153 43 1 5.1976 -2.5048 -3.6273 44 1 4.6227 -0.9758 -4.3492 45 1 2.8887 0.0620 -3.6187 46 1 1.8967 -0.5626 -2.2792 47 1 0.6768 0.5389 -5.2179 48 1 -0.8290 -0.2093 -4.6340 49 1 0.4636 0.2051 -3.4825 50 1 -0.2898 -1.9019 -6.3901 51 1 0.9764 -3.0929 -6.0072 52 1 -2.9016 -5.6527 -5.2855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071880497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:50 Heat of formation + Delta-G solvation = -48.025938 kcal Electronic energy + Delta-G solvation = -32468.800766 eV Core-core repulsion = 28468.786087 eV Total energy + Delta-G solvation = -4000.014679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -40.70364 -39.13685 -38.19580 -36.89488 -34.81863 -32.71400 -32.28746 -31.73389 -30.85941 -29.11778 -28.78120 -26.87779 -26.39123 -25.45841 -23.40288 -22.20905 -21.79413 -21.05066 -20.19803 -18.61642 -18.35960 -17.01815 -16.96393 -16.67583 -16.20243 -16.03038 -15.50837 -15.02273 -14.85041 -14.79056 -14.29526 -13.98556 -13.74839 -13.38865 -13.32056 -12.98945 -12.92685 -12.61698 -12.52069 -12.45334 -12.32463 -12.26091 -12.05641 -12.00650 -11.83265 -11.55409 -11.47334 -11.25176 -11.15235 -11.09906 -10.94429 -10.79254 -10.60010 -10.56094 -10.52180 -10.14059 -9.77342 -9.54491 -9.00380 -8.59312 -8.57122 -8.06681 -7.66088 -6.09580 -4.07528 2.64320 3.03175 3.28631 3.34510 3.36807 3.41369 3.63519 4.16926 4.39279 4.49812 4.56629 4.63141 4.73505 4.91333 4.96507 5.03552 5.14251 5.22553 5.26752 5.27928 5.35657 5.36616 5.40866 5.42472 5.46329 5.52646 5.61345 5.67901 5.71602 5.75651 5.82505 5.85230 5.87837 5.89452 5.92875 5.99700 6.08998 6.13182 6.14091 6.27978 6.38646 6.51593 6.68597 6.93110 7.09290 7.10133 7.38237 7.57690 7.61379 8.18253 8.29139 8.47126 8.92567 9.06837 9.51667 11.03746 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.004215 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.330839 B = 6640.610454 C = 7282.133334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.523 3.477 3 O -0.555 6.555 4 N -0.608 5.608 5 C 0.101 3.899 6 C -0.129 4.129 7 C -0.123 4.123 8 C 0.155 3.845 9 H 0.073 0.927 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.120 4.120 13 C -0.142 4.142 14 C 0.052 3.948 15 N -0.496 5.496 16 C 0.037 3.963 17 C 0.508 3.492 18 O -0.520 6.520 19 N -0.603 5.603 20 C 0.084 3.916 21 C 0.217 3.783 22 C -0.525 4.525 23 H 0.074 0.926 24 C 0.073 3.927 25 N -0.898 5.898 26 Si 0.875 3.125 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.267 1.267 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.043 0.957 48 H 0.076 0.924 49 H 0.054 0.946 50 H 0.028 0.972 51 H 0.035 0.965 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 9.425 10.067 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.313 3.687 3 O -0.434 6.434 4 N -0.342 5.342 5 C -0.022 4.022 6 C -0.167 4.167 7 C -0.161 4.161 8 C 0.051 3.949 9 H 0.091 0.909 10 C -0.051 4.051 11 H 0.087 0.913 12 C -0.158 4.158 13 C -0.180 4.180 14 C -0.076 4.076 15 N -0.220 5.220 16 C -0.095 4.095 17 C 0.294 3.706 18 O -0.395 6.395 19 N -0.336 5.336 20 C -0.060 4.060 21 C 0.097 3.903 22 C -0.563 4.563 23 H 0.092 0.908 24 C -0.129 4.129 25 N -0.536 5.536 26 Si 0.702 3.298 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.192 1.192 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.073 0.927 50 H 0.045 0.955 51 H 0.053 0.947 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.575 8.803 10.085 18.366 hybrid contribution -0.122 0.638 -1.203 1.367 sum 12.452 9.441 8.882 17.975 Atomic orbital electron populations 1.21966 0.91510 1.05262 1.04748 1.20486 0.90424 0.82101 0.75644 1.90685 1.70872 1.30737 1.51090 1.48619 1.07082 1.06162 1.72344 1.22397 0.96279 0.81191 1.02308 1.22692 0.94716 0.99576 0.99708 1.22678 0.97023 0.92678 1.03708 1.21518 0.80217 0.96976 0.96188 0.90857 1.22925 0.94359 0.96815 0.90974 0.91294 1.22682 0.94104 1.02552 0.96496 1.22806 0.99198 1.00563 0.95471 1.22798 0.89509 1.01283 0.93997 1.63053 1.03458 1.50256 1.05221 1.22259 0.94187 0.95092 0.97953 1.20190 0.80954 0.88258 0.81196 1.90651 1.63072 1.22041 1.63700 1.47850 1.25917 1.14920 1.44952 1.21632 1.00149 0.84241 0.99956 1.19626 0.93436 0.88239 0.89020 1.21298 1.19776 1.17424 0.97809 0.90827 1.24837 0.94740 0.95288 0.98058 1.69887 1.25089 1.22349 1.36321 0.86871 0.77868 0.79216 0.85842 1.19937 1.21121 1.19165 0.89467 0.89062 0.88952 0.90910 0.89939 0.91385 0.89636 0.87782 0.91111 0.90190 0.90935 0.90728 0.91809 0.89802 0.93206 0.92950 0.88924 0.93825 0.90477 0.92685 0.95459 0.94682 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.33 36.01 0.34 -1.60 16 2 C 0.52 7.21 5.98 -10.99 -0.07 7.15 16 3 O -0.55 -9.22 16.09 5.56 0.09 -9.13 16 4 N -0.61 -7.84 2.18 -163.02 -0.36 -8.19 16 5 C 0.10 1.26 6.69 -2.53 -0.02 1.24 16 6 C -0.13 -1.38 7.09 -24.58 -0.17 -1.55 16 7 C -0.12 -1.35 5.23 -24.89 -0.13 -1.48 16 8 C 0.15 1.87 2.79 -66.96 -0.19 1.68 16 9 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 10 C 0.06 0.74 2.14 -66.19 -0.14 0.60 16 11 H 0.07 1.02 6.49 -51.93 -0.34 0.68 16 12 C -0.12 -1.21 6.41 -24.59 -0.16 -1.36 16 13 C -0.14 -1.46 6.94 -24.90 -0.17 -1.64 16 14 C 0.05 0.70 6.00 -2.84 -0.02 0.68 16 15 N -0.50 -7.23 3.08 -224.81 -0.69 -7.92 16 16 C 0.04 0.59 3.53 -4.98 -0.02 0.57 16 17 C 0.51 10.32 7.50 -10.98 -0.08 10.24 16 18 O -0.52 -12.46 15.44 5.56 0.09 -12.37 16 19 N -0.60 -12.39 2.86 -182.95 -0.52 -12.92 16 20 C 0.08 1.33 10.24 59.85 0.61 1.95 16 21 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 22 C -0.52 -14.73 9.94 -34.44 -0.34 -15.07 16 23 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 24 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 25 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 26 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 27 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 30 H 0.09 0.80 7.85 -51.93 -0.41 0.39 16 31 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.38 6.85 -51.93 -0.36 1.03 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.75 7.10 -51.93 -0.37 0.38 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 0.71 7.36 -51.93 -0.38 0.33 16 45 H 0.05 0.79 7.74 -51.92 -0.40 0.39 16 46 H 0.09 1.48 4.38 -51.93 -0.23 1.25 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 1.23 8.07 -51.93 -0.42 0.82 16 49 H 0.05 0.77 6.44 -51.93 -0.33 0.43 16 50 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 51 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -34.20 399.08 -8.96 -43.16 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -9.01 Total: 2.32 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.68 Total: 8.66 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.80 Total: -55.40 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.18 Total: -21.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.20 -8.96 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071880497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.866 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds