Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48497 * 109.47145 * 269.99950 * 3 2 1 5 5 H 1.48502 * 109.47095 * 30.00114 * 3 2 1 6 6 H 1.48499 * 109.46917 * 149.99702 * 3 2 1 7 7 C 1.38996 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00075 * 0.02562 * 7 2 1 9 9 N 1.36844 * 120.00272 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00713 * 180.02562 * 9 7 2 11 11 O 1.21792 * 119.99614 * 359.97438 * 10 9 7 12 12 C 1.46271 * 120.00493 * 179.97438 * 10 9 7 13 13 C 1.36827 * 125.17587 * 179.97438 * 12 10 9 14 14 C 1.36728 * 114.70360 * 180.02562 * 13 12 10 15 15 C 1.36569 * 114.78578 * 0.02562 * 14 13 12 16 16 C 1.47683 * 125.14902 * 179.97438 * 15 14 13 17 17 C 1.39679 * 120.09389 * 179.97438 * 16 15 14 18 18 C 1.37805 * 119.90641 * 180.02562 * 17 16 15 19 19 C 1.38905 * 120.09561 * 359.97438 * 18 17 16 20 20 O 1.35831 * 119.90791 * 179.97438 * 19 18 17 21 21 C 1.42905 * 117.00049 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.46866 * 300.00298 * 21 20 19 23 23 F 1.39897 * 109.46886 * 59.99758 * 21 20 19 24 24 C 1.38908 * 120.18208 * 0.27637 * 19 18 17 25 25 C 1.37807 * 120.09459 * 359.48561 * 24 19 18 26 26 S 1.75830 * 125.17740 * 0.34710 * 12 10 9 27 27 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 28 28 H 0.97007 * 120.00232 * 0.02562 * 9 7 2 29 29 H 1.07995 * 122.64452 * 0.05407 * 13 12 10 30 30 H 1.08001 * 122.60783 * 180.02562 * 14 13 12 31 31 H 1.08008 * 120.04870 * 0.04493 * 17 16 15 32 32 H 1.08008 * 119.95156 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47187 * 179.97438 * 21 20 19 34 34 H 1.07997 * 119.94939 * 179.72819 * 24 19 18 35 35 H 1.07997 * 120.04721 * 180.25784 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0091 -1.2037 0.0005 8 1 1.4691 -2.1391 0.0005 9 7 3.3775 -1.2037 0.0011 10 6 4.0515 -2.3708 0.0011 11 8 3.4426 -3.4256 0.0011 12 6 5.5142 -2.3708 0.0011 13 6 6.3025 -3.4892 0.0016 14 6 7.6470 -3.2406 0.0020 15 6 7.9846 -1.9173 0.0024 16 6 9.3648 -1.3920 0.0035 17 6 9.5895 -0.0134 0.0033 18 6 10.8790 0.4726 0.0038 19 6 11.9546 -0.4063 0.0050 20 8 13.2241 0.0769 0.0049 21 6 14.2834 -0.8824 0.0067 22 9 14.1858 -1.6827 1.1501 23 9 14.1868 -1.6858 -1.1345 24 6 11.7356 -1.7780 -0.0001 25 6 10.4493 -2.2724 0.0044 26 16 6.5272 -0.9336 0.0098 27 1 -0.4850 0.8400 -0.0004 28 1 3.8626 -0.3636 0.0014 29 1 5.8948 -4.4892 0.0012 30 1 8.3847 -4.0294 0.0020 31 1 8.7538 0.6708 0.0031 32 1 11.0536 1.5385 0.0041 33 1 15.2425 -0.3645 0.0060 34 1 12.5747 -2.4580 -0.0036 35 1 10.2799 -3.3390 0.0046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071883273.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -119.101866 kcal Electronic energy + Delta-G solvation = -24948.104904 eV Core-core repulsion = 20673.736889 eV Total energy + Delta-G solvation = -4274.368015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.053 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.81042 -47.79635 -40.31805 -38.69910 -38.11803 -36.59051 -34.17737 -32.00709 -31.68975 -31.40958 -28.47952 -26.68357 -25.35077 -24.17917 -23.22135 -22.05416 -20.47826 -19.44393 -19.28680 -18.63010 -18.38251 -18.36676 -17.21937 -16.44230 -15.86337 -15.56484 -15.05729 -15.02877 -14.91947 -14.47841 -14.40749 -14.12347 -14.02778 -13.88829 -13.74023 -13.46448 -13.24000 -13.01362 -12.90994 -12.76585 -12.26458 -11.95568 -11.91064 -11.90704 -11.34788 -11.29112 -10.76899 -10.63217 -10.19500 -9.82983 -9.37584 -9.32081 -8.82155 -8.45105 -8.39787 -7.73911 -6.58437 -3.98434 0.23175 1.02664 1.39962 1.65455 2.06455 2.13060 2.71106 2.93338 2.96856 3.00710 3.02902 3.53288 3.81796 3.90579 4.01203 4.16419 4.41829 4.44780 4.49461 4.56184 4.88070 4.99478 5.08818 5.21108 5.44506 5.57704 5.68850 5.70118 5.80743 5.93861 6.15056 6.19211 6.29353 6.48361 6.64320 6.71651 7.30577 7.90135 8.33910 8.68828 9.14539 9.59824 10.52228 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.002387 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.613417 B =11726.274480 C =12731.394047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.044 3.956 3 Si 0.873 3.127 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.293 4.293 8 H 0.128 0.872 9 N -0.564 5.564 10 C 0.497 3.503 11 O -0.570 6.570 12 C -0.186 4.186 13 C -0.102 4.102 14 C -0.115 4.115 15 C -0.168 4.168 16 C -0.020 4.020 17 C -0.084 4.084 18 C -0.123 4.123 19 C 0.095 3.905 20 O -0.321 6.321 21 C 0.411 3.589 22 F -0.198 7.198 23 F -0.198 7.198 24 C -0.182 4.182 25 C -0.069 4.069 26 S 0.132 5.868 27 H 0.280 0.720 28 H 0.370 0.630 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.181 0.819 34 H 0.135 0.865 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.696 2.720 -0.004 29.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.162 4.162 3 Si 0.698 3.302 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.422 4.422 8 H 0.146 0.854 9 N -0.200 5.200 10 C 0.285 3.715 11 O -0.455 6.455 12 C -0.308 4.308 13 C -0.133 4.133 14 C -0.145 4.145 15 C -0.286 4.286 16 C -0.022 4.022 17 C -0.103 4.103 18 C -0.142 4.142 19 C 0.052 3.948 20 O -0.238 6.238 21 C 0.321 3.679 22 F -0.180 7.180 23 F -0.180 7.180 24 C -0.201 4.201 25 C -0.089 4.089 26 S 0.399 5.601 27 H 0.091 0.909 28 H 0.204 0.796 29 H 0.168 0.832 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.198 0.802 34 H 0.153 0.847 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 28.723 3.880 0.006 28.984 hybrid contribution 0.873 -0.488 0.012 1.000 sum 29.596 3.392 0.018 29.790 Atomic orbital electron populations 1.69609 1.05766 1.28351 1.45643 1.25143 0.95642 0.98398 0.97019 0.86727 0.80231 0.83577 0.79671 1.18820 1.19336 1.18937 1.19597 0.78978 0.97173 1.46458 0.85440 1.42244 1.07883 1.06091 1.63748 1.16346 0.83801 0.84840 0.86502 1.90721 1.67704 1.30462 1.56647 1.25019 0.98225 0.95979 1.11571 1.20346 0.91624 0.99511 1.01829 1.20345 0.96154 0.94859 1.03182 1.23235 0.95114 0.96507 1.13765 1.18056 0.89969 0.92853 1.01354 1.21077 0.96302 0.94331 0.98601 1.20285 0.89773 0.99627 1.04502 1.18916 0.82880 0.92712 1.00289 1.86591 1.13501 1.35097 1.88650 1.23358 0.93377 0.79302 0.71852 1.93108 1.96781 1.76163 1.51972 1.93105 1.96783 1.75998 1.52142 1.21424 0.98934 0.93502 1.06216 1.20984 0.90492 0.99954 0.97506 1.83913 0.95699 1.09431 1.71019 0.90935 0.79595 0.83202 0.84049 0.84827 0.84486 0.80230 0.84706 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.91 13.96 55.50 0.77 -23.14 16 2 C 0.04 1.18 5.50 -17.45 -0.10 1.08 16 3 Si 0.87 18.75 27.74 -169.99 -4.71 14.04 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.26 6.52 56.52 0.37 -4.89 16 7 C -0.29 -8.15 10.16 -15.03 -0.15 -8.31 16 8 H 0.13 4.00 7.38 -52.48 -0.39 3.61 16 9 N -0.56 -13.87 5.08 -12.29 -0.06 -13.93 16 10 C 0.50 12.09 7.72 -13.03 -0.10 11.99 16 11 O -0.57 -15.88 16.38 5.11 0.08 -15.80 16 12 C -0.19 -3.64 6.43 -36.87 -0.24 -3.87 16 13 C -0.10 -1.72 9.88 -40.64 -0.40 -2.12 16 14 C -0.11 -1.59 9.66 -40.73 -0.39 -1.99 16 15 C -0.17 -2.36 6.41 -36.33 -0.23 -2.59 16 16 C -0.02 -0.25 5.87 -104.96 -0.62 -0.86 16 17 C -0.08 -0.94 9.59 -39.20 -0.38 -1.32 16 18 C -0.12 -1.24 9.97 -39.49 -0.39 -1.64 16 19 C 0.10 0.98 6.49 -39.09 -0.25 0.73 16 20 O -0.32 -2.71 10.42 -19.21 -0.20 -2.91 16 21 C 0.41 2.35 5.98 101.05 0.60 2.95 16 22 F -0.20 -1.49 15.59 2.25 0.04 -1.46 16 23 F -0.20 -1.49 15.55 2.25 0.04 -1.45 16 24 C -0.18 -1.88 8.23 -39.49 -0.33 -2.21 16 25 C -0.07 -0.75 9.54 -39.20 -0.37 -1.13 16 26 S 0.13 2.09 21.23 -107.50 -2.28 -0.19 16 27 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.37 8.15 4.83 -40.82 -0.20 7.96 16 29 H 0.15 2.48 8.03 -52.49 -0.42 2.06 16 30 H 0.14 1.51 6.90 -52.49 -0.36 1.15 16 31 H 0.13 1.38 7.27 -52.48 -0.38 1.00 16 32 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.18 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.14 1.25 5.07 -52.49 -0.27 0.99 16 35 H 0.13 1.21 6.75 -52.49 -0.35 0.85 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -32.52 328.86 -7.11 -39.63 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -2.38 Total: 9.54 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -3.35 Total: -9.28 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.71 Total: -37.07 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.12 Total: -18.71 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.07 Total: -2.91 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.04 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.28 Total: -0.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.52 -7.11 -39.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071883273.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.474 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds