Wall clock time and date at job start Tue Mar 31 2020 04:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 C 1.53005 * 109.47113 * 119.99764 * 2 1 3 5 5 O 1.45199 * 109.47205 * 175.00037 * 4 2 1 6 6 C 1.34638 * 116.99659 * 179.97438 * 5 4 2 7 7 O 1.21503 * 120.00368 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99409 * 179.72779 * 6 5 4 9 9 C 1.47608 * 118.75062 * 359.73388 * 8 6 5 10 10 C 1.54168 * 111.09533 * 138.20171 * 9 8 6 11 11 C 1.51270 * 109.77617 * 320.24025 * 10 9 8 12 12 N 1.46201 * 109.10402 * 92.30808 * 11 10 9 13 13 C 1.46900 * 111.00400 * 144.77201 * 12 11 10 14 14 C 1.53001 * 109.47031 * 294.62236 * 13 12 11 15 15 H 1.08993 * 109.47286 * 56.75912 * 14 13 12 16 16 C 1.47203 * 109.47142 * 296.75945 * 14 13 12 17 17 N 9.52184 * 160.22251 * 23.90033 * 4 1 2 18 18 C 1.53004 * 109.46853 * 176.76110 * 14 13 12 19 19 C 1.50699 * 109.46568 * 184.99793 * 18 14 13 20 20 H 1.08003 * 120.00677 * 359.97438 * 19 18 14 21 21 C 1.37881 * 119.99777 * 180.02562 * 19 18 14 22 22 N 1.31519 * 119.99670 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00216 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47432 * 89.99860 * 23 21 19 25 25 H 1.48498 * 109.47597 * 209.99885 * 23 21 19 26 26 H 1.48500 * 109.47316 * 329.99836 * 23 21 19 27 27 C 1.41444 * 116.34504 * 272.98053 * 12 11 10 28 28 C 1.44890 * 118.74080 * 180.02562 * 8 6 5 29 29 H 1.08998 * 109.47909 * 300.00372 * 1 2 3 30 30 H 1.09002 * 109.46928 * 60.00686 * 1 2 3 31 31 H 1.09007 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47909 * 239.99628 * 2 1 3 33 33 H 1.09002 * 109.47030 * 299.99772 * 3 2 1 34 34 H 1.08996 * 109.47054 * 59.99788 * 3 2 1 35 35 H 1.09000 * 109.47229 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.47018 * 55.00121 * 4 2 1 37 37 H 1.08998 * 109.47185 * 295.00217 * 4 2 1 38 38 H 1.09000 * 109.11259 * 258.79056 * 9 8 6 39 39 H 1.09001 * 109.11320 * 17.84254 * 9 8 6 40 40 H 1.08996 * 109.45365 * 200.10327 * 10 9 8 41 41 H 1.09000 * 109.26682 * 80.26910 * 10 9 8 42 42 H 1.09004 * 109.53715 * 332.42521 * 11 10 9 43 43 H 1.09001 * 109.60010 * 212.23064 * 11 10 9 44 44 H 1.08999 * 109.46783 * 54.61580 * 13 12 11 45 45 H 1.08996 * 109.46956 * 174.62134 * 13 12 11 46 46 H 1.08998 * 109.46851 * 304.99461 * 18 14 13 47 47 H 1.08994 * 109.47119 * 65.00083 * 18 14 13 48 48 H 0.97006 * 119.99536 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.38695 * 303.31535 * 27 12 11 50 50 H 1.09001 * 109.38789 * 183.63481 * 27 12 11 51 51 H 1.08995 * 109.43633 * 29.79349 * 28 8 6 52 52 H 1.08997 * 109.43409 * 149.70524 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4870 -0.8254 1.1912 6 6 4.0976 -1.4382 2.2229 7 8 3.4393 -1.8743 3.1464 8 7 5.4386 -1.5730 2.2285 9 6 6.2101 -1.0441 1.0866 10 6 7.4926 -0.3345 1.5646 11 6 7.2007 0.4612 2.8176 12 7 7.4814 -0.3690 3.9878 13 6 8.0254 0.4384 5.0879 14 6 9.3914 0.9967 4.6836 15 1 9.2908 1.5722 3.7635 16 6 10.3313 -0.1152 4.4667 17 7 11.0565 -0.9748 4.2995 18 6 9.9216 1.9029 5.7966 19 6 11.2072 2.5490 5.3485 20 1 11.6064 2.3346 4.3681 21 6 11.8744 3.4133 6.1905 22 7 11.3885 3.6741 7.3845 23 14 13.4674 4.2149 5.6349 24 1 13.1646 5.5020 4.9590 25 1 14.3326 4.4672 6.8151 26 1 14.1718 3.3128 4.6887 27 6 6.4258 -1.1951 4.4393 28 6 6.0674 -2.2375 3.3521 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6053 -1.7198 1.2952 37 1 1.7515 -0.1583 2.1370 38 1 6.4790 -1.8678 0.4254 39 1 5.5925 -0.3338 0.5370 40 1 7.8487 0.3369 0.7833 41 1 8.2580 -1.0805 1.7786 42 1 6.1519 0.7582 2.8247 43 1 7.8313 1.3499 2.8416 44 1 7.3457 1.2626 5.3042 45 1 8.1357 -0.1843 5.9756 46 1 9.1849 2.6750 6.0184 47 1 10.1063 1.3089 6.6917 48 1 11.8577 4.2825 7.9767 49 1 5.5515 -0.5803 4.6534 50 1 6.7340 -1.7119 5.3481 51 1 5.3807 -2.9747 3.7681 52 1 6.9759 -2.7371 3.0160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071902814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:01 Heat of formation + Delta-G solvation = -61.840890 kcal Electronic energy + Delta-G solvation = -30070.613892 eV Core-core repulsion = 26070.000152 eV Total energy + Delta-G solvation = -4000.613740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.95779 -39.22017 -37.48312 -36.39646 -35.34919 -35.08890 -33.56439 -32.73301 -31.76966 -28.87986 -27.57652 -27.06869 -26.49836 -25.99232 -23.31846 -22.59235 -21.70380 -20.73397 -20.58955 -20.24456 -18.19993 -17.24236 -16.97058 -16.71586 -16.53119 -15.76477 -15.55605 -15.34351 -15.11334 -14.63977 -14.48755 -14.24875 -13.90522 -13.71044 -13.38808 -13.06468 -12.97455 -12.86892 -12.70500 -12.57563 -12.37758 -12.36499 -11.95807 -11.75148 -11.56958 -11.55384 -11.44338 -11.38424 -11.25308 -11.14234 -11.10975 -11.04961 -10.91742 -10.74034 -10.65225 -10.52988 -10.52280 -10.11433 -9.56299 -9.24741 -8.90742 -8.46554 -8.07765 -6.10544 -4.13735 1.97240 2.65761 3.28051 3.35312 3.39677 3.56612 3.73144 3.82802 3.96016 4.35594 4.40200 4.41159 4.62941 4.67690 4.82387 4.91554 4.98427 5.01618 5.05148 5.06359 5.14692 5.21793 5.25153 5.27569 5.31625 5.44056 5.47684 5.48447 5.50349 5.62694 5.63408 5.66416 5.69448 5.78385 5.81614 5.84121 5.91281 5.99864 6.02720 6.14690 6.16593 6.36351 6.43281 6.51129 7.10418 7.21700 7.41151 7.48591 7.53155 7.84546 8.12558 8.22115 8.59237 8.91034 9.51733 11.00296 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002310 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.585448 B =12116.681861 C =12737.378700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.091 3.909 5 O -0.367 6.367 6 C 0.643 3.357 7 O -0.575 6.575 8 N -0.585 5.585 9 C 0.114 3.886 10 C -0.133 4.133 11 C 0.068 3.932 12 N -0.567 5.567 13 C 0.070 3.930 14 C 0.010 3.990 15 H 0.100 0.900 16 C 0.258 3.742 17 N -0.481 5.481 18 C 0.031 3.969 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.891 3.109 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.063 3.937 28 C 0.131 3.869 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.026 0.974 48 H 0.262 0.738 49 H 0.029 0.971 50 H 0.086 0.914 51 H 0.090 0.910 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.066 -7.106 -15.052 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.205 4.205 4 C 0.016 3.984 5 O -0.281 6.281 6 C 0.398 3.602 7 O -0.464 6.464 8 N -0.325 5.325 9 C -0.008 4.008 10 C -0.171 4.171 11 C -0.060 4.060 12 N -0.292 5.292 13 C -0.058 4.058 14 C -0.012 4.012 15 H 0.117 0.883 16 C -0.059 4.059 17 N -0.158 5.158 18 C -0.008 4.008 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.067 4.067 28 C 0.009 3.991 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.072 0.928 49 H 0.047 0.953 50 H 0.104 0.896 51 H 0.108 0.892 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.887 -8.726 -15.035 26.414 hybrid contribution 0.029 1.355 0.196 1.370 sum -19.859 -7.371 -14.839 25.863 Atomic orbital electron populations 1.21776 0.93592 1.02313 1.02651 1.21177 0.95923 0.97074 0.97262 1.21834 1.01945 0.94828 1.01899 1.23069 0.75124 1.01100 0.99135 1.86213 1.24162 1.73173 1.44581 1.18180 0.83500 0.77670 0.80884 1.90984 1.64453 1.53597 1.37357 1.46779 1.02422 1.60126 1.23179 1.22102 0.93717 0.98348 0.86670 1.21963 0.96950 1.00405 0.97809 1.21569 0.99770 0.95417 0.89208 1.58344 1.36569 1.26504 1.07755 1.22177 0.94458 0.96269 0.92857 1.19306 0.88616 0.89894 1.03416 0.88277 1.28865 0.92562 0.92850 0.91596 1.81023 1.11423 1.12818 1.10537 1.19171 0.96616 0.93322 0.91668 1.21129 1.07285 1.26489 1.01441 0.92521 1.24961 0.97704 0.96531 0.94832 1.69944 1.39509 1.35840 1.07697 0.86593 0.83476 0.79724 0.78298 1.20496 1.21169 1.19850 1.21637 0.92389 0.95195 0.97509 1.21684 0.97909 0.94349 0.85166 0.92181 0.91578 0.92289 0.90050 0.92385 0.92596 0.91833 0.91340 0.91216 0.91656 0.89545 0.89990 0.89885 0.94355 0.89744 0.92886 0.90260 0.94526 0.95573 0.92802 0.95343 0.89557 0.89219 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.19 37.15 0.34 -0.39 16 2 C -0.10 -0.62 3.16 -90.62 -0.29 -0.90 16 3 C -0.15 -0.97 9.09 37.16 0.34 -0.63 16 4 C 0.09 0.80 4.85 37.16 0.18 0.98 16 5 O -0.37 -3.93 8.29 -40.32 -0.33 -4.27 16 6 C 0.64 8.13 8.35 54.06 0.45 8.58 16 7 O -0.57 -8.82 15.56 -19.27 -0.30 -9.12 16 8 N -0.59 -6.47 2.17 -177.98 -0.39 -6.86 16 9 C 0.11 1.03 6.19 -2.82 -0.02 1.01 16 10 C -0.13 -1.30 5.79 -26.99 -0.16 -1.45 16 11 C 0.07 0.78 5.07 -5.08 -0.03 0.75 16 12 N -0.57 -7.28 3.50 -239.46 -0.84 -8.12 16 13 C 0.07 1.02 4.31 -3.82 -0.02 1.00 16 14 C 0.01 0.17 2.12 -93.40 -0.20 -0.03 16 15 H 0.10 1.65 6.19 -51.93 -0.32 1.33 16 16 C 0.26 5.20 13.63 -20.73 -0.28 4.92 16 17 N -0.48 -10.55 18.54 42.19 0.78 -9.77 16 18 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 19 C -0.53 -13.78 8.60 -34.44 -0.30 -14.08 16 20 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 23 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.06 0.75 5.39 -5.72 -0.03 0.72 16 28 C 0.13 1.45 5.52 -3.94 -0.02 1.43 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.74 6.91 -51.93 -0.36 0.38 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.95 7.98 -51.93 -0.41 0.53 16 42 H 0.04 0.46 7.33 -51.93 -0.38 0.08 16 43 H 0.08 1.00 5.75 -51.93 -0.30 0.70 16 44 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 45 H 0.08 1.16 7.70 -51.93 -0.40 0.76 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 50 H 0.09 0.99 7.72 -51.93 -0.40 0.59 16 51 H 0.09 1.02 7.28 -51.93 -0.38 0.64 16 52 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 415.96 15.07 6.27 6.27 Total: -1.00 -31.59 415.96 -8.56 -40.16 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -9.23 Total: -3.85 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.24 Total: 4.09 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.29 Total: -49.38 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.63 Total: -13.39 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.59 -8.56 -40.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071902814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.686 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds