Wall clock time and date at job start Tue Mar 31 2020 06:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34943 * 126.13148 * 2 1 4 4 H 0.97001 * 126.03311 * 0.02562 * 3 2 1 5 5 N 1.40080 * 107.92976 * 180.23991 * 3 2 1 6 6 C 1.30841 * 108.20388 * 359.75938 * 5 3 2 7 7 C 1.35320 * 126.12282 * 179.82439 * 2 1 3 8 8 S 1.76193 * 126.04213 * 0.02562 * 7 2 1 9 9 O 1.42094 * 106.40554 * 48.25417 * 8 7 2 10 10 O 1.42100 * 106.40306 * 181.17516 * 8 7 2 11 11 N 1.65606 * 107.21943 * 294.71355 * 8 7 2 12 12 C 1.46494 * 120.00042 * 96.15218 * 11 8 7 13 13 C 1.50694 * 109.47296 * 95.00101 * 12 11 8 14 14 H 1.07995 * 120.00057 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99802 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00110 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99775 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47311 * 60.00047 * 17 15 13 19 19 H 1.48503 * 109.47098 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47107 * 299.99719 * 17 15 13 21 21 C 1.39824 * 119.99677 * 276.15399 * 11 8 7 22 22 C 1.38870 * 120.05182 * 58.38175 * 21 11 8 23 23 C 1.38121 * 119.95182 * 179.76381 * 22 21 11 24 24 C 1.38468 * 120.04717 * 0.48481 * 23 22 21 25 25 F 1.35103 * 119.95218 * 179.74185 * 24 23 22 26 26 C 1.38469 * 120.09666 * 359.77154 * 24 23 22 27 27 C 1.38113 * 120.04892 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47497 * 270.17573 * 1 2 3 29 29 H 1.08999 * 109.47382 * 30.17423 * 1 2 3 30 30 H 1.09008 * 109.47620 * 150.17562 * 1 2 3 31 31 H 1.08005 * 125.89828 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47051 * 215.00648 * 12 11 8 33 33 H 1.09004 * 109.46694 * 334.99770 * 12 11 8 34 34 H 0.96996 * 119.99917 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.02917 * 359.97438 * 22 21 11 36 36 H 1.08001 * 119.97920 * 180.23343 * 23 22 21 37 37 H 1.07995 * 119.97292 * 179.97438 * 26 24 23 38 38 H 1.08009 * 120.02397 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3026 1.0899 0.0000 4 1 2.0055 2.0133 0.0004 5 7 3.6333 0.6523 -0.0056 6 6 3.6334 -0.6561 -0.0036 7 6 2.3047 -1.0930 0.0034 8 16 1.7650 -2.7703 0.0079 9 8 0.7785 -2.8772 -1.0092 10 8 2.9395 -3.5696 0.0385 11 7 0.9848 -3.0304 1.4453 12 6 -0.4746 -2.9249 1.5161 13 6 -1.0858 -4.2922 1.3499 14 1 -0.4507 -5.1537 1.2054 15 6 -2.4560 -4.4433 1.3811 16 7 -3.2294 -3.3942 1.5565 17 14 -3.2136 -6.1384 1.1757 18 1 -2.7294 -7.0316 2.2589 19 1 -4.6930 -6.0313 1.2474 20 1 -2.8207 -6.6999 -0.1417 21 6 1.7191 -3.3507 2.5913 22 6 2.7010 -2.4840 3.0529 23 6 3.4217 -2.8001 4.1879 24 6 3.1727 -3.9850 4.8597 25 9 3.8825 -4.2948 5.9668 26 6 2.1978 -4.8532 4.3981 27 6 1.4711 -4.5386 3.2666 28 1 -0.3634 0.0032 1.0276 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3634 -0.8916 -0.5111 31 1 4.5083 -1.2893 -0.0063 32 1 -0.7626 -2.5133 2.4834 33 1 -0.8304 -2.2688 0.7216 34 1 -4.1933 -3.5005 1.5788 35 1 2.8987 -1.5617 2.5267 36 1 4.1829 -2.1246 4.5495 37 1 2.0055 -5.7771 4.9234 38 1 0.7110 -5.2164 2.9066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071911111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:59 Heat of formation + Delta-G solvation = -14.829249 kcal Electronic energy + Delta-G solvation = -27982.593834 eV Core-core repulsion = 23868.500475 eV Total energy + Delta-G solvation = -4114.093359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.084 amu Computer time = 9.05 seconds Orbital eigenvalues (eV) -48.61097 -41.37685 -39.02451 -36.70578 -35.37548 -35.21002 -32.76443 -32.63558 -31.40985 -30.82025 -29.06984 -27.24875 -26.68603 -22.97167 -22.78358 -22.09342 -21.77668 -21.43609 -18.61690 -17.77336 -17.46313 -17.18227 -16.66941 -16.27670 -15.61603 -15.50134 -15.30202 -15.14915 -14.61244 -14.44289 -14.33923 -13.83506 -13.28533 -13.22438 -13.17959 -12.85003 -12.69195 -12.52020 -12.47358 -12.16614 -11.79576 -11.52551 -11.46607 -11.28785 -11.22397 -11.00933 -10.91611 -10.66797 -10.52210 -10.29396 -9.90249 -9.77500 -9.23442 -8.83478 -8.81205 -8.54768 -7.78833 -6.19824 -4.24228 0.87926 1.46151 1.52277 1.55941 2.26651 2.64570 3.27317 3.31670 3.35684 3.52878 3.86891 4.30366 4.35262 4.44600 4.54059 4.56305 4.88564 5.02498 5.07123 5.10791 5.15515 5.37044 5.46931 5.51514 5.63966 5.71066 5.80757 6.01992 6.19494 6.26627 6.29652 6.37144 6.59930 6.82976 6.96505 6.98421 7.15004 7.18730 7.32809 7.58390 7.77487 8.01700 8.76198 9.41562 10.88756 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.008419 B = 0.006549 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.079469 B = 4274.666024 C = 6605.584326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.223 3.777 3 N -0.468 5.468 4 H 0.439 0.561 5 N -0.296 5.296 6 C 0.137 3.863 7 C -0.823 4.823 8 S 2.714 3.286 9 O -0.939 6.939 10 O -0.965 6.965 11 N -0.939 5.939 12 C 0.247 3.753 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.175 3.825 22 C -0.123 4.123 23 C -0.138 4.138 24 C 0.075 3.925 25 F -0.148 7.148 26 C -0.140 4.140 27 C -0.079 4.079 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.198 0.802 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.704 7.187 1.712 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.088 3.912 3 N -0.173 5.173 4 H 0.284 0.716 5 N -0.116 5.116 6 C -0.054 4.054 7 C -0.919 4.919 8 S 2.802 3.198 9 O -0.929 6.929 10 O -0.955 6.955 11 N -0.769 5.769 12 C 0.127 3.873 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.530 5.530 17 Si 0.722 3.278 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.080 3.920 22 C -0.144 4.144 23 C -0.157 4.157 24 C 0.055 3.945 25 F -0.126 7.126 26 C -0.159 4.159 27 C -0.100 4.100 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.215 0.785 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.359 7.786 1.023 12.217 hybrid contribution -0.948 -0.336 0.398 1.082 sum 8.411 7.450 1.420 11.325 Atomic orbital electron populations 1.21277 0.85421 1.06949 1.05951 1.21052 0.94816 0.86132 0.89194 1.46774 1.04468 1.08540 1.57553 0.71598 1.77343 0.95890 1.13033 1.25297 1.23533 0.95995 0.91872 0.93956 1.31793 1.01331 1.24601 1.34184 1.01430 0.72758 0.72761 0.72807 1.93591 1.59512 1.85719 1.54072 1.93520 1.49545 1.66012 1.86399 1.55588 1.17657 1.81639 1.22055 1.19463 0.69909 0.98640 0.99253 1.21400 0.91764 0.93458 1.50935 0.91764 1.24879 0.96896 0.97182 0.94531 1.69876 1.04819 1.29260 1.49063 0.86600 0.78029 0.84059 0.79119 1.20002 1.21144 1.19839 1.17354 0.92643 0.92867 0.89173 1.21088 0.97848 0.98931 0.96567 1.20770 1.01871 0.96529 0.96557 1.17653 0.94728 0.96159 0.85937 1.91453 1.77224 1.93214 1.50755 1.21068 0.96470 1.00224 0.98153 1.21516 0.98764 0.95720 0.94028 0.87614 0.89552 0.86237 0.78526 0.94084 0.92812 0.92450 0.85471 0.85010 0.84724 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.31 36.00 0.34 -1.37 16 2 C 0.22 3.01 7.21 -82.27 -0.59 2.41 16 3 N -0.47 -5.43 7.36 33.47 0.25 -5.19 16 4 H 0.44 3.42 8.96 -182.61 -1.64 1.78 16 5 N -0.30 -4.05 12.70 30.63 0.39 -3.66 16 6 C 0.14 1.93 11.36 -17.36 -0.20 1.74 16 7 C -0.82 -12.78 5.06 -40.01 -0.20 -12.98 16 8 S 2.71 51.62 5.15 -107.50 -0.55 51.07 16 9 O -0.94 -20.43 15.33 -57.17 -0.88 -21.31 16 10 O -0.96 -19.55 17.10 -57.17 -0.98 -20.53 16 11 N -0.94 -18.19 2.87 -59.79 -0.17 -18.36 16 12 C 0.25 5.46 4.97 -5.20 -0.03 5.43 16 13 C -0.54 -13.44 8.20 -34.44 -0.28 -13.73 16 14 H 0.06 1.60 6.98 -52.49 -0.37 1.23 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -23.62 13.29 55.43 0.74 -22.89 16 17 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.18 3.17 4.96 -83.74 -0.42 2.75 16 22 C -0.12 -1.92 9.60 -39.39 -0.38 -2.30 16 23 C -0.14 -1.97 10.02 -39.54 -0.40 -2.37 16 24 C 0.08 1.13 7.30 -39.41 -0.29 0.84 16 25 F -0.15 -2.17 17.27 2.25 0.04 -2.13 16 26 C -0.14 -2.15 10.02 -39.54 -0.40 -2.54 16 27 C -0.08 -1.40 9.51 -39.39 -0.37 -1.78 16 28 H 0.11 1.25 8.12 -51.93 -0.42 0.82 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.12 1.82 5.12 -51.92 -0.27 1.56 16 31 H 0.20 2.36 8.06 -52.48 -0.42 1.93 16 32 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.05 1.19 4.97 -51.93 -0.26 0.93 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.13 1.81 6.58 -52.48 -0.35 1.46 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.15 2.88 6.19 -52.48 -0.32 2.55 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -31.16 340.53 -9.23 -40.40 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.87 Total: 4.51 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -3.31 Total: -22.23 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 1.20 Total: -50.10 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.85 Total: -41.84 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 51.62 SS G_CDS: -0.55 Total: 51.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.16 -9.23 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071911111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.567 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.06 seconds