Wall clock time and date at job start Tue Mar 31 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86795 * 120.00495 * 2 1 4 4 H 1.48504 * 109.47107 * 270.00181 * 3 2 1 5 5 H 1.48503 * 109.46973 * 29.99735 * 3 2 1 6 6 H 1.48498 * 109.47304 * 149.99931 * 3 2 1 7 7 C 1.38756 * 119.99244 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00481 * 0.02562 * 7 2 1 9 9 O 1.34921 * 119.99282 * 180.02562 * 7 2 1 10 10 C 1.34318 * 116.99718 * 180.02562 * 9 7 2 11 11 O 1.21207 * 120.00128 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00178 * 180.02562 * 10 9 7 13 13 C 1.52995 * 109.47240 * 179.97438 * 12 10 9 14 14 N 1.46508 * 109.47075 * 179.97438 * 13 12 10 15 15 C 1.39065 * 119.99648 * 179.97438 * 14 13 12 16 16 N 1.32392 * 119.71418 * 0.02562 * 15 14 13 17 17 C 1.31967 * 121.63419 * 179.97438 * 16 15 14 18 18 C 1.38045 * 120.87715 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.33219 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.46715 * 0.02562 * 19 18 17 21 21 F 1.39897 * 109.47068 * 119.99918 * 19 18 17 22 22 F 1.39895 * 109.47042 * 240.00228 * 19 18 17 23 23 C 1.38847 * 119.34051 * 0.27691 * 18 17 16 24 24 C 1.38421 * 118.48916 * 359.43436 * 23 18 17 25 25 Cl 1.73608 * 120.45903 * 180.26052 * 24 23 18 26 26 H 0.97007 * 119.99262 * 0.02562 * 1 2 3 27 27 H 1.09012 * 109.47012 * 59.99252 * 12 10 9 28 28 H 1.08998 * 109.47085 * 299.99766 * 12 10 9 29 29 H 1.08996 * 109.46955 * 60.00111 * 13 12 10 30 30 H 1.08998 * 109.47340 * 300.00160 * 13 12 10 31 31 H 0.96996 * 119.99490 * 0.02562 * 14 13 12 32 32 H 1.07998 * 119.56017 * 179.97438 * 17 16 15 33 33 H 1.07997 * 120.75169 * 179.72454 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2486 1.6176 0.0000 4 1 2.4961 2.0463 -1.4001 5 1 1.4460 2.6526 0.7000 6 1 3.5461 1.4400 0.7000 7 6 2.0081 -1.2018 0.0005 8 1 1.4681 -2.1370 0.0005 9 8 3.3573 -1.2018 0.0011 10 6 3.9670 -2.3986 0.0010 11 8 3.3068 -3.4151 0.0010 12 6 5.4719 -2.4776 0.0022 13 6 5.9056 -3.9448 0.0025 14 7 7.3687 -4.0215 0.0030 15 6 7.9999 -5.2607 0.0040 16 7 7.2732 -6.3673 0.0039 17 6 7.8324 -7.5626 0.0042 18 6 9.2058 -7.7022 0.0042 19 6 9.8314 -9.0733 0.0040 20 9 8.8250 -10.0450 0.0034 21 9 10.6249 -9.2236 -1.1383 22 9 10.6250 -9.2239 1.1463 23 6 10.0050 -6.5669 0.0096 24 6 9.3904 -5.3267 0.0029 25 17 10.3404 -3.8736 0.0024 26 1 -0.4849 0.8402 -0.0004 27 1 5.8610 -1.9837 0.8927 28 1 5.8624 -1.9832 -0.8873 29 1 5.5166 -4.4388 -0.8877 30 1 5.5152 -4.4389 0.8922 31 1 7.8969 -3.2080 0.0035 32 1 7.2073 -8.4433 0.0046 33 1 11.0818 -6.6496 0.0142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071921961.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:28 Heat of formation + Delta-G solvation = -196.844197 kcal Electronic energy + Delta-G solvation = -25473.520020 eV Core-core repulsion = 20724.853481 eV Total energy + Delta-G solvation = -4748.666539 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.46573 -47.99340 -47.92006 -40.89894 -39.34653 -37.13128 -36.80844 -35.42145 -33.17112 -32.40100 -32.15986 -29.98135 -26.42230 -25.65106 -24.64642 -23.09469 -22.39132 -19.98284 -18.95773 -18.80452 -18.79689 -18.28360 -18.01111 -17.24285 -16.47911 -15.94677 -15.76909 -15.13994 -15.13349 -14.96786 -14.77682 -14.60447 -14.36805 -14.15382 -14.08518 -14.08080 -13.86445 -13.71661 -13.56247 -12.56515 -12.52017 -12.49599 -12.15065 -12.01346 -11.87617 -11.55765 -11.23570 -10.74465 -10.54915 -10.44098 -10.08195 -10.07211 -9.76857 -9.30224 -8.74276 -8.28986 -6.42616 -4.18987 0.42832 0.57625 1.54852 2.31218 2.59774 3.06178 3.06734 3.19683 3.28309 3.33232 3.39113 3.68733 3.87764 4.09996 4.10449 4.19038 4.25457 4.37879 4.75810 4.82897 4.99901 5.00411 5.19895 5.28298 5.48512 5.62229 5.92185 6.00945 6.26364 6.54809 6.77754 7.56829 7.66658 7.97595 8.53391 8.94918 9.59137 10.65712 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002209 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.300223 B =12674.341516 C =13741.544476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.383 4.383 8 H 0.111 0.889 9 O -0.250 6.250 10 C 0.413 3.587 11 O -0.536 6.536 12 C -0.121 4.121 13 C 0.139 3.861 14 N -0.702 5.702 15 C 0.449 3.551 16 N -0.517 5.517 17 C 0.217 3.783 18 C -0.305 4.305 19 C 0.525 3.475 20 F -0.175 7.175 21 F -0.178 7.178 22 F -0.178 7.178 23 C 0.029 3.971 24 C -0.165 4.165 25 Cl -0.048 7.048 26 H 0.280 0.720 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.414 0.586 32 H 0.177 0.823 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.738 -12.795 0.036 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.128 0.872 9 O -0.159 6.159 10 C 0.257 3.743 11 O -0.431 6.431 12 C -0.159 4.159 13 C 0.016 3.984 14 N -0.331 5.331 15 C 0.209 3.791 16 N -0.234 5.234 17 C 0.056 3.944 18 C -0.313 4.313 19 C 0.470 3.530 20 F -0.157 7.157 21 F -0.159 7.159 22 F -0.159 7.159 23 C 0.003 3.997 24 C -0.199 4.199 25 Cl -0.019 7.019 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.252 0.748 32 H 0.194 0.806 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 23.299 -12.630 0.039 26.502 hybrid contribution 1.511 0.950 -0.012 1.785 sum 24.810 -11.680 0.027 27.422 Atomic orbital electron populations 1.69612 1.05716 1.28469 1.47367 1.24562 0.95025 0.98710 0.95525 0.86208 0.80237 0.81500 0.78906 1.19860 1.20718 1.18464 1.20656 0.76006 0.97036 1.52149 0.87187 1.83499 1.24118 1.31205 1.77047 1.22450 0.89819 0.82850 0.79136 1.90640 1.66936 1.36109 1.49377 1.21230 0.92127 0.97253 1.05296 1.21211 0.76765 0.95616 1.04818 1.44988 1.08024 1.03980 1.76064 1.18247 0.86213 0.87524 0.87124 1.67705 1.37486 0.96887 1.21352 1.22545 0.90701 0.95143 0.86012 1.20558 0.96387 0.92381 1.21933 1.17858 0.76089 0.85267 0.73750 1.93176 1.60473 1.65763 1.96245 1.93223 1.75202 1.96345 1.51121 1.93222 1.75199 1.96345 1.51128 1.20872 1.00846 0.88909 0.89063 1.21020 0.90627 0.89474 1.18814 1.98377 1.71236 1.34930 1.97390 0.90962 0.88279 0.88275 0.89747 0.89742 0.74788 0.80585 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.47 13.96 55.48 0.77 -24.70 16 2 C 0.07 1.85 5.49 -17.53 -0.10 1.75 16 3 Si 0.91 20.83 28.62 -169.99 -4.86 15.97 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.38 -11.12 10.10 30.92 0.31 -10.80 16 8 H 0.11 3.53 7.09 -52.49 -0.37 3.16 16 9 O -0.25 -6.32 8.58 -20.72 -0.18 -6.49 16 10 C 0.41 9.00 7.91 36.00 0.28 9.29 16 11 O -0.54 -13.42 15.22 -19.05 -0.29 -13.71 16 12 C -0.12 -1.73 5.92 -27.89 -0.17 -1.90 16 13 C 0.14 1.87 4.98 -4.04 -0.02 1.85 16 14 N -0.70 -7.58 5.67 -60.39 -0.34 -7.93 16 15 C 0.45 4.97 7.48 -154.94 -1.16 3.81 16 16 N -0.52 -6.11 9.57 -12.40 -0.12 -6.23 16 17 C 0.22 2.05 10.59 -17.56 -0.19 1.86 16 18 C -0.31 -2.62 5.38 -104.46 -0.56 -3.19 16 19 C 0.53 4.34 3.33 36.01 0.12 4.46 16 20 F -0.18 -1.47 15.99 2.25 0.04 -1.43 16 21 F -0.18 -1.54 17.25 2.25 0.04 -1.50 16 22 F -0.18 -1.54 17.24 2.25 0.04 -1.50 16 23 C 0.03 0.24 9.56 -39.29 -0.38 -0.14 16 24 C -0.16 -1.54 6.36 -39.16 -0.25 -1.79 16 25 Cl -0.05 -0.39 27.62 -51.86 -1.43 -1.82 16 26 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.41 3.71 7.13 -40.82 -0.29 3.42 16 32 H 0.18 1.29 7.15 -52.49 -0.38 0.91 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -32.08 328.35 -5.77 -37.85 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -2.28 Total: 1.34 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.10 Total: 5.21 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.31 Total: -38.85 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.47 Total: -20.21 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.11 Total: -4.44 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.86 Total: 15.97 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.43 Total: -1.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.08 -5.77 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921961.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.994 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds