Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38857 * 125.75545 * 2 1 4 4 C 1.38987 * 133.10994 * 0.24539 * 3 2 1 5 5 C 1.37613 * 120.05766 * 180.02562 * 4 3 2 6 6 C 1.39932 * 120.13996 * 359.95827 * 5 4 3 7 7 C 1.47465 * 120.02349 * 180.02562 * 6 5 4 8 8 O 1.21511 * 120.00271 * 179.97438 * 7 6 5 9 9 O 1.34784 * 120.00112 * 359.97438 * 7 6 5 10 10 C 1.35695 * 117.00084 * 175.27881 * 9 7 6 11 11 C 1.39315 * 119.81818 * 264.28285 * 10 9 7 12 12 C 1.36435 * 120.18309 * 179.71943 * 11 10 9 13 13 C 1.40836 * 119.81311 * 0.55326 * 12 11 10 14 14 C 1.41204 * 120.17971 * 179.70269 * 13 12 11 15 15 H 1.08003 * 119.99913 * 204.95606 * 14 13 12 16 16 C 1.39921 * 120.00290 * 24.95364 * 14 13 12 17 17 N 1.30862 * 119.99768 * 17.36584 * 16 14 13 18 18 Si 1.86801 * 120.00012 * 197.36305 * 16 14 13 19 19 H 1.48502 * 109.47056 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46812 * 120.00156 * 18 16 14 21 21 H 1.48494 * 109.47078 * 239.99904 * 18 16 14 22 22 C 1.40833 * 119.63625 * 359.71813 * 13 12 11 23 23 C 1.36431 * 119.81596 * 0.02562 * 22 13 12 24 24 C 1.39671 * 119.95026 * 0.02562 * 6 5 4 25 25 C 1.38229 * 119.72477 * 0.02562 * 24 6 5 26 26 N 1.39376 * 133.22678 * 179.97438 * 25 24 6 27 27 H 0.97003 * 125.87415 * 0.03726 * 26 25 24 28 28 C 1.34602 * 125.75136 * 180.31338 * 2 1 3 29 29 O 1.21677 * 125.14216 * 359.73604 * 28 2 1 30 30 H 1.08998 * 109.47481 * 179.71361 * 1 2 3 31 31 H 1.09002 * 109.47030 * 299.71716 * 1 2 3 32 32 H 1.09005 * 109.46729 * 59.71133 * 1 2 3 33 33 H 1.08006 * 119.96977 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.92882 * 179.97438 * 5 4 3 35 35 H 1.07998 * 119.90284 * 0.02562 * 11 10 9 36 36 H 1.08002 * 120.09084 * 180.26659 * 12 11 10 37 37 H 0.96998 * 119.99776 * 179.97438 * 17 16 14 38 38 H 1.08007 * 120.08827 * 179.97438 * 22 13 12 39 39 H 1.08000 * 119.90793 * 179.97438 * 23 22 13 40 40 H 1.08008 * 120.13590 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2763 1.1268 0.0000 4 6 2.0080 2.4905 0.0043 5 6 3.0435 3.3969 0.0025 6 6 4.3692 2.9490 -0.0029 7 6 5.4769 3.9224 -0.0043 8 8 6.6279 3.5331 -0.0085 9 8 5.2126 5.2441 -0.0009 10 6 6.2737 6.0843 0.0970 11 6 6.6474 6.5859 1.3418 12 6 7.7165 7.4267 1.4497 13 6 8.4357 7.7963 0.2966 14 6 9.5396 8.6709 0.3985 15 1 9.8371 9.2664 -0.4520 16 6 10.2481 8.7662 1.6013 17 7 10.1253 7.8314 2.5088 18 14 11.3693 10.2277 1.9117 19 1 11.3325 11.1376 0.7387 20 1 10.9073 10.9583 3.1191 21 1 12.7589 9.7491 2.1242 22 6 8.0477 7.2891 -0.9586 23 6 6.9795 6.4452 -1.0485 24 6 4.6424 1.5793 -0.0069 25 6 3.5993 0.6723 -0.0061 26 7 3.5453 -0.7204 -0.0097 27 1 4.3088 -1.3189 -0.0133 28 6 2.2514 -1.0924 -0.0060 29 8 1.8531 -2.2421 -0.0077 30 1 -0.3634 -1.0276 -0.0051 31 1 -0.3633 0.5094 0.8925 32 1 -0.3633 0.5183 -0.8874 33 1 0.9857 2.8392 0.0092 34 1 2.8326 4.4561 0.0054 35 1 6.0923 6.3046 2.2245 36 1 8.0076 7.8113 2.4160 37 1 10.6167 7.8972 3.3425 38 1 8.5939 7.5681 -1.8477 39 1 6.6804 6.0557 -2.0104 40 1 5.6646 1.2302 -0.0115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072283220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = -26.921311 kcal Electronic energy + Delta-G solvation = -27020.992880 eV Core-core repulsion = 22959.817435 eV Total energy + Delta-G solvation = -4061.175445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -42.83692 -40.33476 -38.61256 -37.44047 -36.23209 -35.80660 -35.39874 -33.56234 -30.94829 -29.99727 -29.67277 -29.17469 -28.02515 -25.53795 -24.01775 -22.96622 -21.74067 -21.66503 -21.19912 -20.21618 -18.60202 -18.30740 -17.49396 -17.00640 -16.92704 -16.65077 -16.01253 -15.69122 -15.37801 -15.16902 -14.68989 -14.37203 -14.13529 -13.99923 -13.76571 -13.60214 -13.20300 -13.04764 -12.79356 -12.74607 -12.24432 -12.01231 -11.61135 -11.40594 -11.31404 -11.25047 -11.06361 -10.99323 -10.89910 -10.73595 -10.39958 -10.12490 -9.91051 -9.40870 -9.20619 -8.83949 -8.22542 -7.71769 -7.43414 -6.93094 -4.51077 0.51634 0.94010 1.88814 2.35687 2.52551 2.69506 2.83732 2.96321 2.99000 3.00870 3.05617 3.55659 3.63862 3.81416 4.10050 4.37347 4.46075 4.67482 4.85757 4.86956 4.94465 5.08791 5.13097 5.20890 5.45733 5.56540 5.66832 5.92667 6.00995 6.09891 6.14198 6.17705 6.25762 6.47283 6.74383 6.83640 6.88984 6.94915 7.09913 7.18820 7.43147 7.63141 7.82167 7.84089 7.86951 8.07021 8.38604 8.56652 8.70099 8.86670 10.00007 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.034139 B = 0.001991 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.981751 B =14058.316763 C =14311.967243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.539 5.539 3 C 0.117 3.883 4 C -0.118 4.118 5 C -0.049 4.049 6 C -0.104 4.104 7 C 0.482 3.518 8 O -0.490 6.490 9 O -0.273 6.273 10 C -0.076 4.076 11 C -0.087 4.087 12 C -0.160 4.160 13 C 0.116 3.884 14 C -0.448 4.448 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.780 5.780 18 Si 0.913 3.087 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.219 4.219 23 C -0.074 4.074 24 C -0.040 4.040 25 C 0.073 3.927 26 N -0.639 5.639 27 H 0.437 0.563 28 C 0.682 3.318 29 O -0.557 6.557 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.284 0.716 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 -9.467 -2.244 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.261 5.261 3 C 0.014 3.986 4 C -0.139 4.139 5 C -0.069 4.069 6 C -0.107 4.107 7 C 0.327 3.673 8 O -0.378 6.378 9 O -0.188 6.188 10 C -0.117 4.117 11 C -0.106 4.106 12 C -0.179 4.179 13 C 0.113 3.887 14 C -0.476 4.476 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.404 5.404 18 Si 0.737 3.263 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.239 4.239 23 C -0.092 4.092 24 C -0.062 4.062 25 C -0.029 4.029 26 N -0.285 5.285 27 H 0.279 0.721 28 C 0.384 3.616 29 O -0.433 6.433 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.560 -10.477 -2.021 18.867 hybrid contribution 1.066 0.160 0.237 1.104 sum -14.494 -10.317 -1.784 17.880 Atomic orbital electron populations 1.21828 0.74505 1.05106 1.03134 1.44933 1.07564 1.04573 1.69040 1.18287 0.88047 0.89448 1.02800 1.20023 1.00561 0.88006 1.05351 1.21270 0.90187 1.00782 0.94625 1.18918 0.92706 0.91221 1.07827 1.21653 0.87930 0.83923 0.73795 1.90842 1.22522 1.80249 1.44143 1.84690 1.36853 1.14651 1.82566 1.17976 0.97769 1.01868 0.94112 1.20459 0.96829 0.99154 0.94149 1.20932 0.94762 1.02503 0.99741 1.17733 0.91042 0.89019 0.90906 1.19715 1.10386 1.19894 0.97602 0.89853 1.26030 0.97024 0.96400 0.95274 1.69849 1.34304 1.29360 1.06904 0.86181 0.79351 0.81244 0.79567 1.18189 1.19503 1.19816 1.20629 1.00494 1.05055 0.97683 1.20367 0.94847 0.98356 0.95656 1.20110 0.98391 0.90048 0.97605 1.17690 0.93770 0.83499 1.07931 1.42921 1.08458 1.05608 1.71543 0.72054 1.15916 0.80861 0.84517 0.80310 1.91071 1.76464 1.16897 1.58892 0.88651 0.90469 0.90483 0.84319 0.82931 0.88717 0.85783 0.90490 0.88205 0.88850 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.14 59.85 0.67 1.22 16 2 N -0.54 -5.16 3.17 -126.29 -0.40 -5.56 16 3 C 0.12 1.15 6.83 -83.78 -0.57 0.58 16 4 C -0.12 -1.00 9.99 -39.53 -0.39 -1.39 16 5 C -0.05 -0.51 9.60 -39.18 -0.38 -0.88 16 6 C -0.10 -1.39 5.87 -104.97 -0.62 -2.01 16 7 C 0.48 8.82 7.82 34.49 0.27 9.09 16 8 O -0.49 -10.72 16.09 -19.27 -0.31 -11.03 16 9 O -0.27 -5.36 9.24 -24.28 -0.22 -5.58 16 10 C -0.08 -1.73 4.97 -38.78 -0.19 -1.92 16 11 C -0.09 -2.05 9.92 -39.83 -0.40 -2.45 16 12 C -0.16 -4.07 8.64 -39.25 -0.34 -4.41 16 13 C 0.12 3.01 5.57 -106.81 -0.60 2.41 16 14 C -0.45 -11.36 9.04 -37.83 -0.34 -11.71 16 15 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 16 C 0.07 1.74 5.14 -17.33 -0.09 1.65 16 17 N -0.78 -19.45 10.95 55.55 0.61 -18.85 16 18 Si 0.91 17.73 29.59 -169.99 -5.03 12.70 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.22 -5.31 9.74 -39.25 -0.38 -5.69 16 23 C -0.07 -1.69 9.88 -39.84 -0.39 -2.09 16 24 C -0.04 -0.48 9.61 -39.05 -0.38 -0.86 16 25 C 0.07 0.78 7.24 -83.81 -0.61 0.17 16 26 N -0.64 -6.37 6.16 -14.33 -0.09 -6.46 16 27 H 0.44 3.32 8.96 -40.82 -0.37 2.95 16 28 C 0.68 8.01 8.82 -87.20 -0.77 7.25 16 29 O -0.56 -8.12 17.52 5.21 0.09 -8.03 16 30 H 0.09 0.59 7.66 -51.93 -0.40 0.19 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.15 1.45 7.59 -52.49 -0.40 1.05 16 35 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.12 3.20 6.17 -52.49 -0.32 2.88 16 37 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 38 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 39 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.15 1.73 7.64 -52.48 -0.40 1.33 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -32.10 356.61 -9.46 -41.55 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.97 Total: 6.90 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -5.50 Total: -11.03 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.12 Total: -30.87 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.44 Total: -24.64 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.10 -9.46 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072283220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.633 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds