Wall clock time and date at job start Tue Mar 31 2020 08:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.50707 * 119.99817 * 180.02562 * 6 5 4 8 8 H 1.09000 * 115.55037 * 154.27581 * 7 6 5 9 9 C 1.52998 * 117.49864 * 8.60695 * 7 6 5 10 10 C 1.52995 * 117.49683 * 299.98072 * 7 6 5 11 11 H 1.09002 * 117.50150 * 214.97858 * 10 7 6 12 12 C 1.50699 * 117.50283 * 0.02562 * 10 7 6 13 13 O 1.21292 * 119.99612 * 359.97438 * 12 10 7 14 14 N 1.34777 * 120.00438 * 180.02562 * 12 10 7 15 15 C 1.40152 * 120.00218 * 179.97438 * 14 12 10 16 16 C 1.40408 * 125.97246 * 0.02562 * 15 14 12 17 17 C 1.35240 * 107.87100 * 180.02562 * 16 15 14 18 18 N 1.34971 * 107.85598 * 359.97438 * 17 16 15 19 19 C 1.46507 * 125.97288 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.46830 * 125.00425 * 19 18 17 21 21 C 1.50700 * 109.46867 * 179.97438 * 20 19 18 22 22 H 1.08006 * 120.00034 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00083 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00102 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00287 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47095 * 89.99462 * 25 23 21 27 27 H 1.48492 * 109.47226 * 210.00241 * 25 23 21 28 28 H 1.48504 * 109.46990 * 330.00282 * 25 23 21 29 29 N 1.31217 * 125.97489 * 179.68857 * 15 14 12 30 30 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 31 31 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 34 34 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 36 36 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 37 37 H 1.09000 * 117.50026 * 359.97438 * 9 7 6 38 38 H 1.09001 * 117.49935 * 145.02426 * 9 7 6 39 39 H 0.96996 * 119.99627 * 359.97438 * 14 12 10 40 40 H 1.08002 * 126.06709 * 359.97438 * 16 15 14 41 41 H 1.07998 * 126.07475 * 179.97438 * 17 16 15 42 42 H 1.09000 * 109.47134 * 245.00394 * 19 18 17 43 43 H 1.08999 * 109.47144 * 4.99987 * 19 18 17 44 44 H 1.09000 * 109.47237 * 299.99907 * 20 19 18 45 45 H 1.08996 * 109.47439 * 60.00344 * 20 19 18 46 46 H 0.96994 * 120.00100 * 179.97438 * 24 23 21 47 47 H 1.07998 * 120.00075 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3342 -2.5021 0.0014 8 1 3.8019 -3.3520 0.4284 9 6 5.8494 -2.4428 0.2048 10 6 5.2749 -2.7751 -1.1739 11 1 5.3617 -3.8049 -1.5204 12 6 5.3776 -1.7182 -2.2432 13 8 4.7276 -0.6982 -2.1520 14 7 6.1908 -1.9067 -3.3013 15 6 6.2859 -0.9240 -4.2960 16 6 5.5949 0.2982 -4.3166 17 6 5.9579 0.9612 -5.4381 18 7 6.8447 0.1925 -6.1046 19 6 7.4939 0.5308 -7.3737 20 6 9.0123 0.4391 -7.2101 21 6 9.6800 0.7865 -8.5157 22 1 9.0813 1.0471 -9.3759 23 6 11.0554 0.7727 -8.6117 24 7 11.7846 0.4568 -7.5638 25 14 11.8832 1.2040 -10.2298 26 1 12.1425 2.6654 -10.2791 27 1 13.1688 0.4691 -10.3394 28 1 10.9961 0.8205 -11.3573 29 7 7.0407 -0.9825 -5.3677 30 6 2.1981 -1.1970 0.0058 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6583 2.1327 -0.0004 35 1 4.1204 2.1327 0.0001 36 1 5.3517 0.0000 0.0005 37 1 6.3014 -1.4599 0.3377 38 1 6.3141 -3.2541 0.7652 39 1 6.7103 -2.7226 -3.3743 40 1 4.8968 0.6466 -3.5699 41 1 5.6014 1.9331 -5.7457 42 1 7.1688 -0.1668 -8.1455 43 1 7.2202 1.5456 -7.6626 44 1 9.3374 1.1368 -6.4383 45 1 9.2860 -0.5757 -6.9213 46 1 12.7522 0.4467 -7.6314 47 1 1.6581 -2.1323 0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287825.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:37 Heat of formation + Delta-G solvation = 99.775330 kcal Electronic energy + Delta-G solvation = -28081.171782 eV Core-core repulsion = 24231.730594 eV Total energy + Delta-G solvation = -3849.441188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.11415 -40.35137 -38.86525 -36.74031 -34.95302 -33.80823 -32.55355 -31.91575 -30.83990 -29.68806 -28.57801 -26.94307 -25.57226 -24.28876 -23.76066 -22.22489 -21.59670 -21.48331 -20.24109 -19.78368 -19.35639 -17.59208 -17.06968 -16.40601 -16.32157 -15.65948 -15.33055 -15.21614 -14.84336 -14.70089 -14.37935 -14.22301 -14.03821 -13.84170 -13.38826 -13.15011 -13.06455 -12.71254 -12.60601 -12.39006 -12.36345 -12.21378 -12.03277 -11.55861 -11.23345 -11.08040 -11.04786 -10.91608 -10.76500 -10.72646 -10.54636 -10.35367 -9.97636 -9.75248 -9.68461 -9.31399 -8.68582 -8.46049 -8.40223 -8.15947 -7.72981 -6.09950 -4.15372 1.33244 1.50417 2.10602 2.53397 2.61264 3.26382 3.32232 3.32724 3.35321 3.50119 3.62896 3.92698 4.24553 4.37901 4.46910 4.56102 4.70458 4.80750 4.90176 4.95820 5.10518 5.19670 5.26062 5.26966 5.34526 5.41415 5.42179 5.46293 5.50859 5.69292 5.69988 5.76981 6.00669 6.05769 6.08754 6.14459 6.15522 6.22732 6.43816 6.53348 6.54427 6.61287 6.67761 7.09003 7.18185 7.35761 7.46694 7.59671 7.67995 7.91811 8.15611 8.21887 8.32900 8.90881 9.49214 11.01120 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.002076 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.744545 B =13483.919958 C =14160.724758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.057 4.057 6 C -0.047 4.047 7 C -0.078 4.078 8 H 0.122 0.878 9 C -0.147 4.147 10 C -0.179 4.179 11 H 0.131 0.869 12 C 0.542 3.458 13 O -0.494 6.494 14 N -0.629 5.629 15 C 0.273 3.727 16 C -0.278 4.278 17 C 0.054 3.946 18 N -0.341 5.341 19 C 0.133 3.867 20 C 0.016 3.984 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.060 3.940 24 N -0.889 5.889 25 Si 0.897 3.103 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.273 1.273 29 N -0.307 5.307 30 C -0.110 4.110 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.412 0.588 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.020 0.980 45 H 0.033 0.967 46 H 0.263 0.737 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.328 -4.914 18.649 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.137 4.137 4 C -0.140 4.140 5 C -0.075 4.075 6 C -0.047 4.047 7 C -0.097 4.097 8 H 0.140 0.860 9 C -0.184 4.184 10 C -0.201 4.201 11 H 0.148 0.852 12 C 0.328 3.672 13 O -0.367 6.367 14 N -0.277 5.277 15 C 0.019 3.981 16 C -0.309 4.309 17 C -0.095 4.095 18 N -0.124 5.124 19 C 0.014 3.986 20 C -0.021 4.021 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.142 4.142 24 N -0.527 5.527 25 Si 0.725 3.275 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.198 1.198 29 N -0.137 5.137 30 C -0.129 4.129 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.247 0.753 40 H 0.182 0.818 41 H 0.188 0.812 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.733 -4.863 18.012 26.439 hybrid contribution 0.474 0.239 -0.766 0.931 sum -18.259 -4.624 17.246 25.539 Atomic orbital electron populations 1.20735 0.91700 1.02217 1.02041 1.19713 0.95578 0.93180 1.01488 1.20911 0.94288 0.97112 1.01348 1.20955 0.94146 0.97797 1.01059 1.20705 0.99179 0.91798 0.95779 1.18761 0.92997 0.92553 1.00378 1.21088 0.91735 0.97605 0.99234 0.86032 1.23197 0.95683 1.04322 0.95172 1.22230 1.08597 0.99605 0.89637 0.85163 1.19699 0.78754 0.87451 0.81263 1.90740 1.42713 1.27965 1.75268 1.42553 1.44865 1.20128 1.20152 1.19104 0.97698 0.90735 0.90583 1.21619 1.11050 0.95609 1.02584 1.22601 0.94507 0.98299 0.94053 1.48798 1.32491 1.12070 1.19025 1.22289 0.97462 1.00039 0.78824 1.19350 0.86033 0.99022 0.97741 1.21034 0.91641 1.47761 0.96325 0.92299 1.25009 0.97479 0.95021 0.96696 1.69981 1.05667 1.47745 1.29280 0.86511 0.78953 0.78454 0.83595 1.20555 1.21114 1.19752 1.77367 1.23925 1.06402 1.06041 1.20628 0.93126 0.97224 1.01874 0.91521 0.91920 0.91961 0.86807 0.86614 0.87020 0.87589 0.87038 0.75290 0.81826 0.81234 0.90766 0.89550 0.96133 0.94841 0.92775 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.10 -1.04 5.88 -104.62 -0.62 -1.66 16 3 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 5 C -0.06 -0.66 6.17 -39.58 -0.24 -0.91 16 6 C -0.05 -0.50 4.36 -104.62 -0.46 -0.96 16 7 C -0.08 -0.64 6.04 -91.77 -0.55 -1.20 16 8 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 9 C -0.15 -1.06 9.57 -26.73 -0.26 -1.31 16 10 C -0.18 -1.53 6.19 -91.77 -0.57 -2.10 16 11 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 12 C 0.54 6.85 7.44 -10.99 -0.08 6.77 16 13 O -0.49 -7.38 8.83 5.55 0.05 -7.33 16 14 N -0.63 -8.76 5.45 -11.13 -0.06 -8.82 16 15 C 0.27 4.93 8.11 -154.40 -1.25 3.68 16 16 C -0.28 -4.89 9.60 -39.83 -0.38 -5.27 16 17 C 0.05 0.92 11.44 -17.24 -0.20 0.73 16 18 N -0.34 -6.83 3.68 -61.38 -0.23 -7.05 16 19 C 0.13 2.74 6.45 -4.04 -0.03 2.71 16 20 C 0.02 0.42 5.15 -27.89 -0.14 0.28 16 21 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 22 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 25 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 N -0.31 -6.37 12.43 31.44 0.39 -5.98 16 30 C -0.11 -1.16 9.39 -39.58 -0.37 -1.53 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.11 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.11 1.30 5.78 -52.49 -0.30 0.99 16 37 H 0.11 0.87 6.18 -51.93 -0.32 0.55 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.41 4.70 8.82 -40.82 -0.36 4.34 16 40 H 0.16 2.83 5.92 -52.49 -0.31 2.52 16 41 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -34.16 390.88 -10.97 -45.12 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.75 Total: 5.84 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -5.98 Total: -18.00 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.84 Total: -47.74 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.05 Total: -7.33 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.16 -10.97 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287825.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.899 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds