Wall clock time and date at job start Tue Mar 31 2020 08:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38252 * 120.00354 * 2 1 4 4 C 1.38210 * 120.00210 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.00133 * 359.97438 * 4 3 2 6 6 C 1.38210 * 119.99847 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00133 * 179.97438 * 6 5 4 8 8 H 1.09002 * 115.55418 * 154.32495 * 7 6 5 9 9 C 1.53005 * 117.51695 * 8.63124 * 7 6 5 10 10 C 1.52996 * 117.49942 * 300.00135 * 7 6 5 11 11 H 1.08996 * 117.49968 * 359.97438 * 10 7 6 12 12 C 1.50700 * 117.49729 * 214.99924 * 10 7 6 13 13 O 1.21290 * 120.00003 * 0.02562 * 12 10 7 14 14 N 1.34776 * 120.00014 * 179.97438 * 12 10 7 15 15 C 1.40155 * 120.00485 * 180.02562 * 14 12 10 16 16 C 1.40408 * 125.96807 * 359.97438 * 15 14 12 17 17 C 1.35239 * 107.86857 * 179.97438 * 16 15 14 18 18 N 1.34976 * 107.86054 * 359.97438 * 17 16 15 19 19 C 1.46496 * 125.97768 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.46656 * 125.00297 * 19 18 17 21 21 C 1.50706 * 109.47153 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99503 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00434 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99826 * 359.72891 * 23 21 20 25 25 Si 1.86800 * 120.00406 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72576 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72423 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72459 * 25 23 21 29 29 N 1.31217 * 125.97764 * 180.26213 * 15 14 12 30 30 C 1.38216 * 119.99593 * 180.27934 * 2 1 3 31 31 H 1.08998 * 109.47252 * 90.00151 * 1 2 3 32 32 H 1.08998 * 109.47275 * 210.00388 * 1 2 3 33 33 H 1.09001 * 109.46670 * 329.99722 * 1 2 3 34 34 H 1.07997 * 119.99539 * 359.97438 * 3 2 1 35 35 H 1.08007 * 119.99968 * 179.97438 * 4 3 2 36 36 H 1.07993 * 120.00168 * 179.97438 * 5 4 3 37 37 H 1.08993 * 117.49919 * 145.02667 * 9 7 6 38 38 H 1.08996 * 117.49613 * 0.02562 * 9 7 6 39 39 H 0.97011 * 120.00000 * 0.02562 * 14 12 10 40 40 H 1.08004 * 126.07232 * 359.96240 * 16 15 14 41 41 H 1.08001 * 126.07616 * 180.02562 * 17 16 15 42 42 H 1.08999 * 109.46878 * 5.01203 * 19 18 17 43 43 H 1.08993 * 109.47496 * 245.00594 * 19 18 17 44 44 H 1.09004 * 109.47178 * 60.00667 * 20 19 18 45 45 H 1.08993 * 109.47411 * 300.00349 * 20 19 18 46 46 H 0.97000 * 120.00236 * 0.27947 * 24 23 21 47 47 H 1.07999 * 120.00649 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 -0.0001 -0.0005 6 6 3.5807 -1.1970 -0.0005 7 6 4.3341 -2.5022 -0.0011 8 1 3.8018 -3.3526 0.4250 9 6 5.8495 -2.4437 0.2020 10 6 5.2745 -2.7745 -1.1768 11 1 5.3480 -2.0099 -1.9501 12 6 5.3938 -4.1979 -1.6572 13 8 4.7569 -5.0763 -1.1151 14 7 6.2075 -4.4947 -2.6898 15 6 6.3181 -5.8183 -3.1370 16 6 5.6432 -6.9281 -2.6037 17 6 6.0178 -8.0197 -3.3086 18 7 6.8957 -7.6213 -4.2533 19 6 7.5524 -8.4854 -5.2372 20 6 7.2843 -7.9503 -6.6453 21 6 7.9604 -8.8389 -7.6576 22 1 8.5244 -9.6994 -7.3293 23 6 7.8589 -8.5533 -9.0025 24 7 7.1676 -7.5084 -9.4025 25 14 8.6963 -9.6551 -10.2572 26 1 10.0711 -9.1562 -10.5147 27 1 8.7635 -11.0422 -9.7312 28 1 7.9201 -9.6429 -11.5231 29 7 7.0745 -6.2380 -4.1237 30 6 2.1980 -1.1970 -0.0058 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6584 2.1325 -0.0004 35 1 4.1205 2.1326 -0.0010 36 1 5.3517 -0.0002 -0.0014 37 1 6.3140 -3.2555 0.7615 38 1 6.3016 -1.4611 0.3364 39 1 6.7167 -3.7920 -3.1236 40 1 4.9482 -6.9128 -1.7771 41 1 5.6749 -9.0307 -3.1454 42 1 7.1578 -9.4979 -5.1522 43 1 8.6263 -8.4971 -5.0513 44 1 7.6788 -6.9378 -6.7305 45 1 6.2104 -7.9387 -6.8313 46 1 6.7325 -6.9364 -8.7511 47 1 1.6581 -2.1323 -0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:54 Heat of formation + Delta-G solvation = 82.570505 kcal Electronic energy + Delta-G solvation = -26985.910856 eV Core-core repulsion = 23135.723611 eV Total energy + Delta-G solvation = -3850.187246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14107 -40.37642 -39.39545 -36.91617 -35.13164 -34.07527 -32.88001 -31.99261 -31.17909 -29.78954 -28.43456 -27.26731 -25.53062 -24.15746 -23.83681 -22.48056 -21.86225 -21.56599 -20.34429 -19.87311 -19.72253 -17.69590 -17.23226 -16.93716 -16.59615 -15.82531 -15.57473 -15.42061 -15.22314 -14.67846 -14.51597 -14.15351 -14.09222 -13.76183 -13.54839 -13.49371 -12.96746 -12.89921 -12.73512 -12.65477 -12.54089 -12.42805 -12.22940 -11.73924 -11.65980 -11.30520 -11.12505 -11.00443 -10.83859 -10.80206 -10.56023 -10.20306 -10.12284 -10.00413 -9.86675 -9.08432 -8.86226 -8.75743 -8.52586 -8.41372 -7.85400 -6.45958 -4.17573 0.92870 1.05062 1.95454 2.40050 2.50695 3.16026 3.34894 3.39343 3.42393 3.43617 3.58228 3.71886 4.12633 4.31256 4.44110 4.48155 4.50063 4.57391 4.68208 4.76189 4.80770 4.99412 5.07433 5.11384 5.24811 5.27531 5.30080 5.33396 5.35530 5.46361 5.54434 5.65832 5.73638 5.80691 5.88781 5.93513 6.01554 6.11336 6.12998 6.24462 6.29066 6.31652 6.36585 6.66506 7.05616 7.19413 7.22043 7.36627 7.53690 8.00523 8.03750 8.20407 8.33925 8.75465 9.56287 10.95030 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.001701 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.694899 B =16460.234972 C =17047.864863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.049 4.049 7 C -0.080 4.080 8 H 0.129 0.871 9 C -0.142 4.142 10 C -0.175 4.175 11 H 0.130 0.870 12 C 0.552 3.448 13 O -0.516 6.516 14 N -0.628 5.628 15 C 0.273 3.727 16 C -0.279 4.279 17 C 0.056 3.944 18 N -0.343 5.343 19 C 0.141 3.859 20 C 0.002 3.998 21 C -0.610 4.610 22 H 0.053 0.947 23 C 0.018 3.982 24 N -0.907 5.907 25 Si 1.075 2.925 26 H -0.287 1.287 27 H -0.288 1.288 28 H -0.283 1.283 29 N -0.309 5.309 30 C -0.109 4.109 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.414 0.586 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.012 0.988 46 H 0.271 0.729 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 15.990 23.091 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.049 4.049 7 C -0.098 4.098 8 H 0.147 0.853 9 C -0.179 4.179 10 C -0.196 4.196 11 H 0.148 0.852 12 C 0.338 3.662 13 O -0.390 6.390 14 N -0.275 5.275 15 C 0.019 3.981 16 C -0.310 4.310 17 C -0.092 4.092 18 N -0.126 5.126 19 C 0.022 3.978 20 C -0.035 4.035 21 C -0.648 4.648 22 H 0.071 0.929 23 C -0.186 4.186 24 N -0.542 5.542 25 Si 0.903 3.097 26 H -0.213 1.213 27 H -0.214 1.214 28 H -0.209 1.209 29 N -0.139 5.139 30 C -0.127 4.127 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.250 0.750 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.043 0.957 45 H 0.030 0.970 46 H 0.081 0.919 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.735 15.399 20.883 27.075 hybrid contribution -0.481 0.342 1.819 1.912 sum -8.216 15.741 22.703 28.822 Atomic orbital electron populations 1.20811 0.91088 1.02831 1.02531 1.19928 0.96180 0.93038 0.99256 1.21054 0.94337 0.97520 1.01343 1.21107 0.94292 0.97908 0.99850 1.21054 1.00038 0.91911 1.01320 1.19082 0.93313 0.92804 0.99738 1.21099 0.91934 0.97056 0.99714 0.85290 1.23185 0.95544 1.03958 0.95244 1.22252 1.08380 0.94923 0.94075 0.85222 1.19600 0.78282 0.89573 0.78747 1.90638 1.44006 1.48347 1.56003 1.42445 1.45150 1.06329 1.33561 1.19113 0.98108 0.85474 0.95397 1.21631 1.11070 0.89669 1.08609 1.22629 0.94607 1.00405 0.91553 1.48823 1.33619 1.04338 1.25829 1.22133 0.96721 0.90657 0.88326 1.19487 0.97181 0.97791 0.89076 1.21894 1.36519 1.13358 0.93060 0.92869 1.25892 0.96277 0.98312 0.98167 1.70734 1.30446 1.14607 1.38428 0.83461 0.76008 0.74775 0.75482 1.21328 1.21371 1.20904 1.77354 1.25024 0.91618 1.19888 1.20908 0.93329 0.97887 1.00531 0.91015 0.91394 0.91542 0.86157 0.85970 0.85822 0.87422 0.87125 0.74988 0.81765 0.81005 0.89301 0.90557 0.95722 0.97001 0.91877 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.08 -0.66 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -0.91 9.70 -39.59 -0.38 -1.30 16 4 C -0.11 -0.81 10.05 -39.58 -0.40 -1.21 16 5 C -0.13 -0.94 9.30 -39.58 -0.37 -1.31 16 6 C -0.05 -0.42 5.61 -104.62 -0.59 -1.01 16 7 C -0.08 -0.69 5.55 -91.77 -0.51 -1.20 16 8 H 0.13 1.25 7.67 -51.93 -0.40 0.86 16 9 C -0.14 -1.02 9.56 -26.73 -0.26 -1.28 16 10 C -0.18 -1.57 5.82 -91.77 -0.53 -2.11 16 11 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 12 C 0.55 7.14 7.58 -10.99 -0.08 7.06 16 13 O -0.52 -8.13 13.39 5.55 0.07 -8.05 16 14 N -0.63 -8.78 5.45 -11.13 -0.06 -8.84 16 15 C 0.27 4.94 8.11 -154.39 -1.25 3.69 16 16 C -0.28 -4.90 9.60 -39.83 -0.38 -5.28 16 17 C 0.06 0.96 11.44 -17.24 -0.20 0.76 16 18 N -0.34 -6.83 3.67 -61.38 -0.23 -7.06 16 19 C 0.14 2.91 6.44 -4.04 -0.03 2.89 16 20 C 0.00 0.06 4.47 -27.88 -0.12 -0.06 16 21 C -0.61 -17.03 9.11 -34.44 -0.31 -17.34 16 22 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 23 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 24 N -0.91 -27.97 13.65 55.43 0.76 -27.21 16 25 Si 1.07 24.97 29.90 -169.99 -5.08 19.89 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 N -0.31 -6.36 12.44 31.44 0.39 -5.97 16 30 C -0.11 -0.94 9.39 -39.58 -0.37 -1.31 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.12 0.70 6.02 -52.49 -0.32 0.39 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 0.57 6.18 -51.93 -0.32 0.25 16 39 H 0.41 4.70 8.83 -40.82 -0.36 4.34 16 40 H 0.17 2.81 5.92 -52.48 -0.31 2.50 16 41 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.02 0.69 8.01 -51.93 -0.42 0.28 16 45 H 0.01 0.33 8.00 -51.93 -0.42 -0.09 16 46 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -34.96 397.56 -10.97 -45.93 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.68 Total: 5.50 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -6.14 Total: -20.17 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.86 Total: -49.08 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.07 Total: -8.05 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.96 -10.97 -45.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.499 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds