Wall clock time and date at job start Tue Mar 31 2020 07:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30244 * 126.15758 * 2 1 4 4 N 1.39828 * 110.09478 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.40130 * 180.02562 * 4 3 2 6 6 C 1.37059 * 109.19669 * 359.97438 * 4 3 2 7 7 N 1.32717 * 133.38752 * 180.02562 * 6 4 3 8 8 C 1.31440 * 121.73190 * 179.97438 * 7 6 4 9 9 C 1.39442 * 121.48266 * 0.02562 * 8 7 6 10 10 N 1.39987 * 120.32761 * 180.02562 * 9 8 7 11 11 S 1.65603 * 120.00245 * 313.67786 * 10 9 8 12 12 O 1.42096 * 106.39892 * 52.54742 * 11 10 9 13 13 O 1.42097 * 106.40361 * 185.46775 * 11 10 9 14 14 N 1.65604 * 107.21631 * 299.00795 * 11 10 9 15 15 C 1.46498 * 119.99574 * 95.14370 * 14 11 10 16 16 C 1.46494 * 120.00195 * 275.14252 * 14 11 10 17 17 C 1.50693 * 109.47186 * 94.59892 * 16 14 11 18 18 H 1.08000 * 120.00297 * 5.00638 * 17 16 14 19 19 C 1.37885 * 120.00066 * 185.00077 * 17 16 14 20 20 N 1.31517 * 119.99619 * 5.03276 * 19 17 16 21 21 Si 1.86796 * 120.00072 * 185.02754 * 19 17 16 22 22 H 1.48503 * 109.47160 * 65.00541 * 21 19 17 23 23 H 1.48505 * 109.46848 * 185.00313 * 21 19 17 24 24 H 1.48501 * 109.47009 * 305.00160 * 21 19 17 25 25 C 1.38563 * 119.34314 * 359.97438 * 9 8 7 26 26 C 1.40026 * 118.00703 * 0.02562 * 25 9 8 27 27 H 1.08996 * 109.47403 * 90.02639 * 1 2 3 28 28 H 1.09004 * 109.47095 * 210.02528 * 1 2 3 29 29 H 1.09004 * 109.46964 * 330.02003 * 1 2 3 30 30 H 1.08995 * 109.47387 * 90.01710 * 5 4 3 31 31 H 1.08999 * 109.47100 * 210.02520 * 5 4 3 32 32 H 1.09005 * 109.46921 * 330.01627 * 5 4 3 33 33 H 1.08004 * 119.25999 * 179.97438 * 8 7 6 34 34 H 0.97003 * 119.99768 * 133.68170 * 10 9 8 35 35 H 1.09001 * 109.47524 * 89.99833 * 15 14 11 36 36 H 1.09000 * 109.46823 * 209.99780 * 15 14 11 37 37 H 1.08998 * 109.47558 * 329.99877 * 15 14 11 38 38 H 1.08996 * 109.47064 * 214.60718 * 16 14 11 39 39 H 1.09004 * 109.46990 * 334.60065 * 16 14 11 40 40 H 0.96993 * 119.99629 * 179.97438 * 20 19 17 41 41 H 1.08001 * 121.00149 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2755 1.0516 0.0000 4 7 3.6192 0.6647 0.0006 5 6 4.7651 1.5774 0.0013 6 6 3.6941 -0.7038 0.0016 7 7 4.7070 -1.5614 0.0028 8 6 4.5122 -2.8613 0.0041 9 6 3.2283 -3.4053 0.0036 10 7 3.0488 -4.7936 0.0055 11 16 3.9259 -5.7434 -1.0295 12 8 5.2901 -5.3979 -0.8323 13 8 3.4295 -7.0662 -0.8783 14 7 3.5424 -5.2732 -2.5703 15 6 4.3847 -4.3001 -3.2702 16 6 2.3609 -5.8303 -3.2335 17 6 1.1896 -4.9033 -3.0351 18 1 1.3305 -3.9529 -2.5417 19 6 -0.0622 -5.2683 -3.4834 20 7 -0.2545 -6.4647 -3.9946 21 14 -1.4849 -4.0636 -3.3647 22 1 -1.2192 -2.8957 -4.2427 23 1 -2.7378 -4.7332 -3.7972 24 1 -1.6285 -3.6042 -1.9598 25 6 2.1319 -2.5580 0.0023 26 6 2.3676 -1.1777 0.0010 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 5.0490 1.8033 1.0291 31 1 5.6039 1.1078 -0.5126 32 1 4.4949 2.5001 -0.5123 33 1 5.3658 -3.5230 0.0046 34 1 2.4106 -5.1993 0.6130 35 1 5.1661 -4.8248 -3.8200 36 1 3.7740 -3.7253 -3.9664 37 1 4.8408 -3.6262 -2.5450 38 1 2.5607 -5.9405 -4.2993 39 1 2.1294 -6.8053 -2.8046 40 1 -1.1351 -6.7216 -4.3097 41 1 1.1257 -2.9504 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072301192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:33 Heat of formation + Delta-G solvation = 32.527002 kcal Electronic energy + Delta-G solvation = -28350.255734 eV Core-core repulsion = 24393.968953 eV Total energy + Delta-G solvation = -3956.286781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 8.35 seconds Orbital eigenvalues (eV) -41.54296 -38.56571 -36.79218 -35.58581 -35.41796 -35.11263 -34.04049 -32.56113 -31.09610 -29.64696 -28.90997 -27.85308 -25.41411 -25.15873 -23.99218 -22.40791 -22.38258 -19.98069 -19.12232 -18.01788 -17.65003 -17.20637 -16.65672 -16.50346 -16.12017 -15.85575 -15.49101 -15.06391 -14.47894 -13.90073 -13.69792 -13.59450 -13.45298 -13.41858 -13.31565 -13.11162 -12.83957 -12.52616 -12.38428 -12.23447 -12.07319 -11.84050 -11.66592 -11.54579 -11.24913 -11.19837 -11.05528 -10.92061 -10.84642 -10.57391 -10.18917 -9.95831 -9.83895 -9.39705 -8.89019 -8.56412 -8.17438 -7.82226 -6.17735 -4.24365 0.75670 0.94439 1.40296 2.11888 2.36576 3.18608 3.22697 3.26778 3.29063 3.73201 3.94129 4.08948 4.28106 4.30527 4.47461 4.74997 4.86957 5.00612 5.08459 5.12558 5.15987 5.30714 5.36962 5.42405 5.49605 5.52883 5.67536 5.75119 5.81553 6.00930 6.20257 6.24179 6.31579 6.45848 6.55654 6.75865 7.07653 7.27986 7.36358 7.44071 7.53723 7.78796 7.90879 8.07861 8.80368 9.41437 10.90141 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.005719 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.724214 B = 4894.573931 C = 6902.142538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.112 3.888 3 N -0.244 5.244 4 N -0.400 5.400 5 C 0.116 3.884 6 C 0.301 3.699 7 N -0.484 5.484 8 C 0.144 3.856 9 C 0.072 3.928 10 N -1.056 6.056 11 S 2.784 3.216 12 O -0.992 6.992 13 O -0.968 6.968 14 N -0.989 5.989 15 C 0.104 3.896 16 C 0.243 3.757 17 C -0.542 4.542 18 H 0.063 0.937 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.000 4.000 26 C -0.205 4.205 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.191 0.809 34 H 0.423 0.577 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.266 0.734 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 11.650 8.178 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 N -0.058 5.058 4 N -0.191 5.191 5 C -0.025 4.025 6 C 0.063 3.937 7 N -0.198 5.198 8 C -0.027 4.027 9 C -0.028 4.028 10 N -0.806 5.806 11 S 2.792 3.208 12 O -0.976 6.976 13 O -0.952 6.952 14 N -0.832 5.832 15 C -0.043 4.043 16 C 0.121 3.879 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.032 4.032 26 C -0.216 4.216 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.208 0.792 34 H 0.259 0.741 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.819 12.644 8.201 16.541 hybrid contribution -2.275 -0.322 0.025 2.298 sum 4.543 12.322 8.227 15.497 Atomic orbital electron populations 1.20307 0.85340 1.03928 1.04011 1.23465 0.96750 0.88322 0.98166 1.76612 0.86489 1.22888 1.19848 1.47941 1.04206 1.01448 1.65523 1.21739 0.84833 0.93031 1.02887 1.19042 0.90448 0.86174 0.98085 1.66781 1.32615 1.02271 1.18131 1.23601 0.96460 0.89989 0.92699 1.18005 0.93960 0.83953 1.06931 1.53799 1.59533 1.12993 1.54252 1.01992 0.73022 0.73053 0.72715 1.93501 1.33623 1.84659 1.85784 1.93618 1.81206 1.34552 1.85871 1.57535 1.38730 1.56403 1.30538 1.21296 0.93740 0.91684 0.97560 1.19271 0.79758 0.94855 0.93996 1.21506 0.92860 1.04124 1.39663 0.91915 1.24958 0.98647 0.95061 0.95126 1.69928 1.23535 1.18281 1.40744 0.86665 0.81530 0.81268 0.78648 1.20218 1.21185 1.19875 1.21103 0.99833 0.89837 0.92429 1.20247 0.93521 0.94231 1.13555 0.89511 0.89719 0.90176 0.91459 0.89247 0.89696 0.79208 0.74121 0.93363 0.90861 0.92797 0.94527 0.92648 0.92447 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.48 36.01 0.38 -0.42 16 2 C 0.11 1.55 7.44 -80.22 -0.60 0.96 16 3 N -0.24 -3.53 12.40 34.82 0.43 -3.10 16 4 N -0.40 -5.67 4.05 -67.17 -0.27 -5.94 16 5 C 0.12 1.14 11.44 59.84 0.68 1.83 16 6 C 0.30 4.76 7.97 -155.95 -1.24 3.51 16 7 N -0.48 -7.68 10.38 -12.16 -0.13 -7.81 16 8 C 0.14 2.26 9.44 -17.27 -0.16 2.09 16 9 C 0.07 1.13 6.28 -83.56 -0.52 0.60 16 10 N -1.06 -16.66 5.84 32.51 0.19 -16.47 16 11 S 2.78 52.08 5.96 -107.50 -0.64 51.44 16 12 O -0.99 -18.39 14.23 -57.17 -0.81 -19.20 16 13 O -0.97 -21.17 16.81 -57.17 -0.96 -22.13 16 14 N -0.99 -19.71 3.22 -123.06 -0.40 -20.11 16 15 C 0.10 1.78 10.32 59.85 0.62 2.40 16 16 C 0.24 5.81 5.43 -5.20 -0.03 5.78 16 17 C -0.54 -13.54 9.38 -34.44 -0.32 -13.86 16 18 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 19 C 0.07 1.71 5.45 -17.82 -0.10 1.61 16 20 N -0.89 -24.54 13.28 55.43 0.74 -23.80 16 21 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C 0.00 0.01 10.16 -38.79 -0.39 -0.39 16 26 C -0.21 -3.16 6.34 -105.18 -0.67 -3.83 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.19 2.95 5.71 -52.48 -0.30 2.65 16 34 H 0.42 5.71 8.96 -34.47 -0.31 5.40 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 37 H 0.05 0.86 6.68 -51.93 -0.35 0.51 16 38 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 39 H 0.06 1.46 6.98 -51.93 -0.36 1.10 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -32.23 362.84 -8.85 -41.08 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.08 Total: 5.64 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.36 Total: 0.27 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: 0.56 Total: -77.23 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.77 Total: -41.33 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 52.08 SS G_CDS: -0.64 Total: 51.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.23 -8.85 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072301192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.608 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.35 seconds