Wall clock time and date at job start Tue Mar 31 2020 07:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30244 * 126.15758 * 2 1 4 4 N 1.39828 * 110.09478 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.40130 * 180.02562 * 4 3 2 6 6 C 1.37059 * 109.19669 * 359.97438 * 4 3 2 7 7 N 1.32717 * 133.38752 * 180.02562 * 6 4 3 8 8 C 1.31440 * 121.73190 * 179.97438 * 7 6 4 9 9 C 1.39442 * 121.48266 * 0.02562 * 8 7 6 10 10 N 1.39987 * 120.32761 * 180.02562 * 9 8 7 11 11 S 1.65603 * 120.00245 * 313.67786 * 10 9 8 12 12 O 1.42096 * 106.39892 * 52.54742 * 11 10 9 13 13 O 1.42097 * 106.40361 * 185.46775 * 11 10 9 14 14 N 1.65604 * 107.21631 * 299.00795 * 11 10 9 15 15 C 1.46498 * 119.99574 * 95.14370 * 14 11 10 16 16 C 1.46494 * 120.00195 * 275.14252 * 14 11 10 17 17 C 1.50693 * 109.47186 * 94.59892 * 16 14 11 18 18 H 1.08000 * 120.00297 * 5.00638 * 17 16 14 19 19 C 1.37885 * 120.00066 * 185.00077 * 17 16 14 20 20 N 1.31517 * 119.99619 * 5.03276 * 19 17 16 21 21 Si 1.86796 * 120.00072 * 185.02754 * 19 17 16 22 22 H 1.48503 * 109.47160 * 65.00541 * 21 19 17 23 23 H 1.48505 * 109.46848 * 185.00313 * 21 19 17 24 24 H 1.48501 * 109.47009 * 305.00160 * 21 19 17 25 25 C 1.38563 * 119.34314 * 359.97438 * 9 8 7 26 26 C 1.40026 * 118.00703 * 0.02562 * 25 9 8 27 27 H 1.08996 * 109.47403 * 90.02639 * 1 2 3 28 28 H 1.09004 * 109.47095 * 210.02528 * 1 2 3 29 29 H 1.09004 * 109.46964 * 330.02003 * 1 2 3 30 30 H 1.08995 * 109.47387 * 90.01710 * 5 4 3 31 31 H 1.08999 * 109.47100 * 210.02520 * 5 4 3 32 32 H 1.09005 * 109.46921 * 330.01627 * 5 4 3 33 33 H 1.08004 * 119.25999 * 179.97438 * 8 7 6 34 34 H 0.97003 * 119.99768 * 133.68170 * 10 9 8 35 35 H 1.09001 * 109.47524 * 89.99833 * 15 14 11 36 36 H 1.09000 * 109.46823 * 209.99780 * 15 14 11 37 37 H 1.08998 * 109.47558 * 329.99877 * 15 14 11 38 38 H 1.08996 * 109.47064 * 214.60718 * 16 14 11 39 39 H 1.09004 * 109.46990 * 334.60065 * 16 14 11 40 40 H 0.96993 * 119.99629 * 179.97438 * 20 19 17 41 41 H 1.08001 * 121.00149 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2755 1.0516 0.0000 4 7 3.6192 0.6647 0.0006 5 6 4.7651 1.5774 0.0013 6 6 3.6941 -0.7038 0.0016 7 7 4.7070 -1.5614 0.0028 8 6 4.5122 -2.8613 0.0041 9 6 3.2283 -3.4053 0.0036 10 7 3.0488 -4.7936 0.0055 11 16 3.9259 -5.7434 -1.0295 12 8 5.2901 -5.3979 -0.8323 13 8 3.4295 -7.0662 -0.8783 14 7 3.5424 -5.2732 -2.5703 15 6 4.3847 -4.3001 -3.2702 16 6 2.3609 -5.8303 -3.2335 17 6 1.1896 -4.9033 -3.0351 18 1 1.3305 -3.9529 -2.5417 19 6 -0.0622 -5.2683 -3.4834 20 7 -0.2545 -6.4647 -3.9946 21 14 -1.4849 -4.0636 -3.3647 22 1 -1.2192 -2.8957 -4.2427 23 1 -2.7378 -4.7332 -3.7972 24 1 -1.6285 -3.6042 -1.9598 25 6 2.1319 -2.5580 0.0023 26 6 2.3676 -1.1777 0.0010 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 5.0490 1.8033 1.0291 31 1 5.6039 1.1078 -0.5126 32 1 4.4949 2.5001 -0.5123 33 1 5.3658 -3.5230 0.0046 34 1 2.4106 -5.1993 0.6130 35 1 5.1661 -4.8248 -3.8200 36 1 3.7740 -3.7253 -3.9664 37 1 4.8408 -3.6262 -2.5450 38 1 2.5607 -5.9405 -4.2993 39 1 2.1294 -6.8053 -2.8046 40 1 -1.1351 -6.7216 -4.3097 41 1 1.1257 -2.9504 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072301192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:30 Heat of formation + Delta-G solvation = 9.796717 kcal Electronic energy + Delta-G solvation = -28351.241393 eV Core-core repulsion = 24393.968953 eV Total energy + Delta-G solvation = -3957.272440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -42.65034 -39.73472 -38.35043 -37.24635 -37.01007 -36.33410 -35.05764 -34.46888 -32.23517 -30.49408 -30.07042 -29.63834 -26.81340 -26.37060 -25.14035 -24.22026 -23.54035 -21.12306 -20.46065 -19.24993 -19.10909 -18.63383 -18.30293 -17.97145 -17.42371 -16.97104 -16.90843 -16.44535 -16.08063 -15.23498 -15.07972 -14.88004 -14.58942 -14.42046 -14.35843 -14.30198 -14.11562 -13.93328 -13.66436 -13.47368 -13.39356 -13.17526 -13.06900 -12.98657 -12.90661 -12.71736 -12.50552 -12.37469 -12.21020 -12.03186 -11.90841 -11.73128 -11.07771 -10.57858 -10.52996 -10.03063 -9.82043 -8.97674 -8.13600 -6.27371 -0.51357 -0.38905 0.16791 1.12231 1.29704 1.46790 1.49924 1.56919 1.79992 2.44931 2.47014 2.54738 3.05694 3.18213 3.20729 3.34175 3.42487 3.63473 3.88241 4.01627 4.17799 4.29717 4.34769 4.41381 4.59751 4.64804 4.66735 4.75987 4.78336 4.80600 4.96644 4.99991 5.05096 5.27226 5.28090 5.44839 5.46336 5.70330 5.73861 5.84990 6.05019 6.12667 6.36141 6.75164 6.84457 7.42869 8.94204 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.005719 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.724214 B = 4894.573931 C = 6902.142538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.111 3.889 3 N -0.255 5.255 4 N -0.403 5.403 5 C 0.107 3.893 6 C 0.286 3.714 7 N -0.490 5.490 8 C 0.141 3.859 9 C 0.060 3.940 10 N -1.046 6.046 11 S 2.800 3.200 12 O -0.990 6.990 13 O -1.003 7.003 14 N -0.996 5.996 15 C 0.099 3.901 16 C 0.255 3.745 17 C -0.542 4.542 18 H 0.073 0.927 19 C 0.013 3.987 20 N -0.928 5.928 21 Si 0.952 3.048 22 H -0.273 1.273 23 H -0.292 1.292 24 H -0.248 1.248 25 C 0.005 3.995 26 C -0.220 4.220 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.191 0.809 34 H 0.433 0.567 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.020 0.980 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 13.951 9.000 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 N -0.070 5.070 4 N -0.194 5.194 5 C -0.032 4.032 6 C 0.047 3.953 7 N -0.204 5.204 8 C -0.031 4.031 9 C -0.040 4.040 10 N -0.799 5.799 11 S 2.808 3.192 12 O -0.973 6.973 13 O -0.987 6.987 14 N -0.838 5.838 15 C -0.047 4.047 16 C 0.132 3.868 17 C -0.581 4.581 18 H 0.091 0.909 19 C -0.187 4.187 20 N -0.568 5.568 21 Si 0.776 3.224 22 H -0.198 1.198 23 H -0.218 1.218 24 H -0.171 1.171 25 C -0.027 4.027 26 C -0.230 4.230 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.207 0.793 34 H 0.272 0.728 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.263 14.981 9.040 18.585 hybrid contribution -2.000 -0.953 -0.199 2.225 sum 4.263 14.028 8.841 17.121 Atomic orbital electron populations 1.20486 0.82954 1.05515 1.04733 1.24003 0.98188 0.87389 0.97173 1.76606 0.86751 1.23250 1.20379 1.48338 1.04976 1.01338 1.64769 1.22043 0.83855 0.93087 1.04237 1.19316 0.90742 0.87044 0.98232 1.66775 1.32864 1.02286 1.18499 1.23589 0.96498 0.90116 0.92847 1.18011 0.94298 0.83489 1.08214 1.53398 1.59695 1.13144 1.53656 1.01402 0.72993 0.72353 0.72422 1.93504 1.33610 1.84540 1.85662 1.93573 1.81807 1.36995 1.86304 1.57451 1.37983 1.56996 1.31323 1.21461 0.93734 0.91546 0.97933 1.18855 0.81138 0.93747 0.93056 1.21774 0.93064 1.04310 1.38939 0.90864 1.25811 1.01494 0.96537 0.94827 1.70072 1.24082 1.20359 1.42244 0.85690 0.77798 0.78887 0.80008 1.19819 1.21842 1.17133 1.21240 1.00199 0.89810 0.91495 1.20510 0.93960 0.94727 1.13838 0.89022 0.88478 0.88336 0.89976 0.88829 0.87942 0.79301 0.72841 0.91743 0.91096 0.91446 0.96164 0.95642 0.92629 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.48 71.24 0.75 -0.63 16 2 C 0.11 2.81 7.44 44.77 0.33 3.14 16 3 N -0.26 -6.82 12.40 -43.74 -0.54 -7.36 16 4 N -0.40 -10.66 4.05 -366.44 -1.48 -12.15 16 5 C 0.11 1.89 11.44 127.77 1.46 3.36 16 6 C 0.29 8.57 7.97 134.05 1.07 9.64 16 7 N -0.49 -14.91 10.38 -192.38 -2.00 -16.91 16 8 C 0.14 4.25 9.44 85.04 0.80 5.05 16 9 C 0.06 1.80 6.28 38.21 0.24 2.04 16 10 N -1.05 -31.97 5.84 -51.06 -0.30 -32.27 16 11 S 2.80 103.79 5.96 -56.49 -0.34 103.45 16 12 O -0.99 -35.84 14.23 -128.00 -1.82 -37.66 16 13 O -1.00 -44.36 16.81 -128.00 -2.15 -46.51 16 14 N -1.00 -39.44 3.22 -543.26 -1.75 -41.19 16 15 C 0.10 3.30 10.32 127.77 1.32 4.62 16 16 C 0.26 12.38 5.43 85.63 0.47 12.85 16 17 C -0.54 -26.77 9.38 25.60 0.24 -26.53 16 18 H 0.07 3.40 7.82 -2.91 -0.02 3.38 16 19 C 0.01 0.67 5.45 84.66 0.46 1.13 16 20 N -0.93 -52.01 13.28 21.45 0.28 -51.72 16 21 Si 0.95 39.20 29.54 68.60 2.03 41.23 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 25 C 0.00 0.14 10.16 22.78 0.23 0.37 16 26 C -0.22 -6.33 6.34 -20.23 -0.13 -6.46 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.10 1.42 8.14 -2.38 -0.02 1.41 16 33 H 0.19 5.67 5.71 -2.91 -0.02 5.65 16 34 H 0.43 11.29 8.96 -96.74 -0.87 10.42 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 37 H 0.07 2.05 6.68 -2.39 -0.02 2.04 16 38 H 0.02 1.03 8.11 -2.39 -0.02 1.01 16 39 H 0.03 1.39 6.98 -2.39 -0.02 1.37 16 40 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -68.20 362.84 -0.61 -68.82 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.21 Total: 23.69 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 7.24 Total: 8.57 kcal Atomic # 7 Polarization: -155.80 SS G_CDS: -5.79 Total: -161.59 kcal Atomic # 8 Polarization: -80.20 SS G_CDS: -3.97 Total: -84.17 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 103.79 SS G_CDS: -0.34 Total: 103.45 kcal Total: -68.20 -0.61 -68.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072301192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.614 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds