Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00387 * 2 1 4 4 H 1.48505 * 109.47208 * 270.00314 * 3 2 1 5 5 H 1.48502 * 109.46793 * 30.00015 * 3 2 1 6 6 H 1.48502 * 109.47278 * 149.99991 * 3 2 1 7 7 C 1.37885 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99967 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47351 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99951 * 270.00579 * 10 9 7 12 12 O 1.21597 * 119.99680 * 189.19607 * 11 10 9 13 13 N 1.34776 * 120.00384 * 9.18759 * 11 10 9 14 14 C 1.39938 * 120.00106 * 187.78458 * 13 11 10 15 15 C 1.38895 * 120.06602 * 333.77664 * 14 13 11 16 16 C 1.38100 * 119.95546 * 179.70077 * 15 14 13 17 17 C 1.38287 * 120.08287 * 0.59232 * 16 15 14 18 18 C 1.38378 * 120.12443 * 359.68574 * 17 16 15 19 19 Cl 1.73602 * 119.97866 * 180.02562 * 18 17 16 20 20 C 1.38249 * 120.04557 * 0.02562 * 18 17 16 21 21 C 1.46507 * 119.99969 * 89.99618 * 10 9 7 22 22 C 1.53178 * 109.54468 * 240.10106 * 21 10 9 23 23 C 1.53093 * 109.16325 * 183.15413 * 22 21 10 24 24 O 1.42904 * 109.41349 * 57.60948 * 23 22 21 25 25 C 1.42900 * 114.09675 * 298.83935 * 24 23 22 26 26 C 1.53092 * 109.41432 * 61.16012 * 25 24 23 27 27 H 0.97003 * 120.00058 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47038 * 60.00166 * 9 7 2 29 29 H 1.09002 * 109.47335 * 299.99932 * 9 7 2 30 30 H 0.97003 * 119.99118 * 7.79255 * 13 11 10 31 31 H 1.08001 * 120.02185 * 359.97438 * 15 14 13 32 32 H 1.07996 * 119.96101 * 180.27227 * 16 15 14 33 33 H 1.07994 * 119.94092 * 179.69973 * 17 16 15 34 34 H 1.08005 * 120.04516 * 180.02562 * 20 18 17 35 35 H 1.09000 * 109.54515 * 0.36896 * 21 10 9 36 36 H 1.09007 * 109.52222 * 303.05833 * 22 21 10 37 37 H 1.08993 * 109.52203 * 63.24397 * 22 21 10 38 38 H 1.08990 * 109.47837 * 297.62720 * 23 22 21 39 39 H 1.09003 * 109.47458 * 177.58851 * 23 22 21 40 40 H 1.09004 * 109.48570 * 301.18225 * 25 24 23 41 41 H 1.09000 * 109.49314 * 181.15195 * 25 24 23 42 42 H 1.09000 * 109.52414 * 182.48250 * 26 25 24 43 43 H 1.09004 * 109.52334 * 62.30332 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.6408 -4.1249 -1.1677 12 8 3.2953 -5.1496 -1.1745 13 7 2.3531 -3.5014 -2.3275 14 6 2.6644 -4.1134 -3.5468 15 6 3.7014 -5.0346 -3.6184 16 6 4.0027 -5.6417 -4.8216 17 6 3.2810 -5.3246 -5.9578 18 6 2.2509 -4.4031 -5.8917 19 17 1.3470 -4.0083 -7.3203 20 6 1.9410 -3.7965 -4.6886 21 6 2.6789 -4.1695 1.2683 22 6 4.2015 -4.0248 1.3522 23 6 4.6980 -4.6792 2.6441 24 8 4.2979 -6.0509 2.6659 25 6 2.8826 -6.2464 2.6374 26 6 2.3132 -5.6550 1.3453 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 1.9304 -2.6284 -2.3168 31 1 4.2690 -5.2791 -2.7327 32 1 4.8061 -6.3613 -4.8764 33 1 3.5217 -5.7972 -6.8986 34 1 1.1367 -3.0776 -4.6369 35 1 2.2143 -3.6362 2.0976 36 1 4.6619 -4.5159 0.4948 37 1 4.4674 -2.9678 1.3537 38 1 4.2688 -4.1617 3.5019 39 1 5.7854 -4.6169 2.6883 40 1 2.4296 -5.7493 3.4952 41 1 2.6619 -7.3131 2.6771 42 1 1.2286 -5.7637 1.3418 43 1 2.7353 -6.1790 0.4877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072305974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -51.075435 kcal Electronic energy + Delta-G solvation = -27671.010088 eV Core-core repulsion = 23742.187487 eV Total energy + Delta-G solvation = -3928.822602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.57665 -39.21043 -38.14713 -36.42475 -35.35361 -34.48544 -32.98420 -31.58943 -30.82180 -30.55230 -29.02530 -27.27752 -24.50784 -23.40418 -23.16056 -22.70692 -22.08988 -20.40335 -19.37143 -17.71120 -16.96173 -16.73004 -16.36364 -15.81017 -15.74866 -15.17810 -14.79701 -14.67031 -14.47745 -14.39594 -13.98724 -13.87079 -13.64351 -13.35733 -13.27715 -12.64590 -12.44609 -12.09028 -12.02894 -11.68974 -11.54239 -11.42873 -11.20733 -11.19356 -10.94450 -10.90186 -10.84589 -10.68308 -10.40400 -10.15418 -9.94916 -9.84412 -9.42451 -9.00182 -8.71979 -8.63337 -8.05120 -7.63738 -6.33605 -4.43794 1.37664 1.42215 2.17230 3.12974 3.15891 3.21525 3.25130 3.52537 3.99027 4.08691 4.17954 4.42541 4.96378 4.99323 5.11864 5.12864 5.17801 5.29988 5.42975 5.47641 5.49869 5.56393 5.63536 5.72502 5.75472 5.86010 5.88172 5.95554 6.24593 6.28728 6.30845 6.45871 6.54417 6.58272 6.60790 6.65412 6.81268 6.97959 7.25808 7.27139 7.40203 7.60602 7.62500 7.86169 8.39889 8.67584 9.06266 9.26927 10.72155 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.007907 B = 0.004523 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3540.243042 B = 6188.727744 C = 8936.412296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.236 3.764 10 N -0.604 5.604 11 C 0.711 3.289 12 O -0.592 6.592 13 N -0.678 5.678 14 C 0.198 3.802 15 C -0.137 4.137 16 C -0.090 4.090 17 C -0.146 4.146 18 C -0.011 4.011 19 Cl -0.079 7.079 20 C -0.154 4.154 21 C 0.177 3.823 22 C -0.170 4.170 23 C 0.068 3.932 24 O -0.385 6.385 25 C 0.068 3.932 26 C -0.179 4.179 27 H 0.267 0.733 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.423 0.577 31 H 0.166 0.834 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -8.700 -3.873 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.116 3.884 10 N -0.336 5.336 11 C 0.414 3.586 12 O -0.473 6.473 13 N -0.324 5.324 14 C 0.099 3.901 15 C -0.157 4.157 16 C -0.109 4.109 17 C -0.166 4.166 18 C -0.039 4.039 19 Cl -0.051 7.051 20 C -0.176 4.176 21 C 0.072 3.928 22 C -0.208 4.208 23 C -0.010 4.010 24 O -0.304 6.304 25 C -0.009 4.009 26 C -0.217 4.217 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.263 0.737 31 H 0.183 0.817 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.777 -9.345 -3.844 11.177 hybrid contribution -0.370 2.004 -0.177 2.046 sum 4.407 -7.341 -4.020 9.459 Atomic orbital electron populations 1.69913 1.06045 1.27607 1.48906 1.24963 0.94842 0.99411 0.94419 0.86509 0.79856 0.82806 0.78431 1.20376 1.20991 1.19741 1.21524 0.93685 0.90354 1.53029 0.91872 1.19447 0.87399 0.82834 0.98737 1.47508 1.46724 1.36531 1.02845 1.15815 0.79727 0.82590 0.80460 1.90665 1.45419 1.25511 1.85730 1.42973 1.63861 1.22755 1.02824 1.17526 0.93333 0.94595 0.84642 1.22007 0.96752 0.97209 0.99760 1.21019 0.99062 0.99179 0.91616 1.20907 0.96697 0.99441 0.99554 1.20478 0.96224 0.99720 0.87432 1.98351 1.74399 1.93445 1.38877 1.20677 1.01872 1.04236 0.90850 1.20711 0.93681 0.92886 0.85522 1.22609 0.96662 1.01917 0.99641 1.22515 0.99886 0.82178 0.96380 1.87884 1.22369 1.25362 1.94760 1.22504 0.81318 1.00833 0.96279 1.22794 1.01220 0.97188 1.00504 0.92301 0.94927 0.94195 0.73678 0.81731 0.85246 0.85543 0.84763 0.89561 0.89511 0.90604 0.93408 0.89189 0.93649 0.89244 0.91513 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.11 13.29 55.43 0.74 -22.37 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.55 -13.10 9.04 -34.44 -0.31 -13.41 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.24 5.18 4.75 -5.20 -0.02 5.15 16 10 N -0.60 -11.70 2.41 -172.96 -0.42 -12.12 16 11 C 0.71 13.80 7.51 -86.92 -0.65 13.15 16 12 O -0.59 -11.74 9.48 5.28 0.05 -11.69 16 13 N -0.68 -12.36 5.09 -14.23 -0.07 -12.43 16 14 C 0.20 3.29 6.45 -83.69 -0.54 2.75 16 15 C -0.14 -2.17 8.83 -39.39 -0.35 -2.51 16 16 C -0.09 -1.17 10.04 -39.61 -0.40 -1.57 16 17 C -0.15 -1.85 9.83 -39.51 -0.39 -2.23 16 18 C -0.01 -0.16 6.32 -39.53 -0.25 -0.41 16 19 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 16 20 C -0.15 -2.34 9.73 -39.36 -0.38 -2.72 16 21 C 0.18 3.04 2.64 -67.75 -0.18 2.87 16 22 C -0.17 -2.77 5.39 -26.59 -0.14 -2.92 16 23 C 0.07 0.94 6.84 37.21 0.25 1.20 16 24 O -0.39 -5.85 10.77 -35.23 -0.38 -6.23 16 25 C 0.07 0.92 6.84 37.21 0.25 1.17 16 26 C -0.18 -2.81 5.38 -26.59 -0.14 -2.95 16 27 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.03 0.75 6.92 -51.93 -0.36 0.39 16 29 H 0.04 0.93 7.92 -51.93 -0.41 0.52 16 30 H 0.42 7.96 6.71 -40.82 -0.27 7.68 16 31 H 0.17 2.86 5.45 -52.49 -0.29 2.57 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.95 8.06 -52.48 -0.42 1.52 16 35 H 0.09 1.49 7.80 -51.93 -0.40 1.08 16 36 H 0.09 1.58 6.44 -51.93 -0.33 1.24 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.87 5.77 -51.93 -0.30 1.57 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -26.07 362.04 -10.22 -36.29 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.72 Total: 11.91 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -3.35 Total: -0.86 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.25 Total: -46.92 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.33 Total: -17.93 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.07 -10.22 -36.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072305974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.790 kcal (2) G-P(sol) polarization free energy of solvation -26.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds