Wall clock time and date at job start Tue Mar 31 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47066 * 299.99913 * 3 2 1 6 6 H 1.48503 * 109.47214 * 59.99644 * 3 2 1 7 7 C 1.38945 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00211 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99965 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00155 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47700 * 179.97438 * 12 10 9 14 14 C 1.40020 * 120.00592 * 180.02562 * 13 12 10 15 15 C 1.38694 * 120.08813 * 0.02562 * 14 13 12 16 16 C 1.38253 * 120.01734 * 180.02562 * 15 14 13 17 17 C 1.38259 * 120.19900 * 359.95906 * 16 15 14 18 18 C 1.38357 * 120.17994 * 359.78473 * 17 16 15 19 19 Cl 1.73604 * 120.00934 * 180.25649 * 18 17 16 20 20 C 1.38750 * 119.97612 * 0.49140 * 18 17 16 21 21 N 1.40105 * 120.09635 * 179.76728 * 20 18 17 22 22 C 1.47012 * 111.00118 * 63.36055 * 21 20 18 23 23 C 1.53097 * 109.25896 * 177.60968 * 22 21 20 24 24 O 1.43012 * 109.26123 * 56.84652 * 23 22 21 25 25 C 1.43018 * 113.73753 * 301.32912 * 24 23 22 26 26 C 1.47009 * 111.00166 * 299.72329 * 21 20 18 27 27 H 0.96997 * 120.00310 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00010 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47705 * 59.99934 * 12 10 9 30 30 H 1.09007 * 109.47611 * 299.99539 * 12 10 9 31 31 H 0.97005 * 119.99604 * 359.97438 * 13 12 10 32 32 H 1.08001 * 119.99080 * 359.97438 * 15 14 13 33 33 H 1.08005 * 119.90094 * 179.97438 * 16 15 14 34 34 H 1.07999 * 119.91011 * 180.02562 * 17 16 15 35 35 H 1.09007 * 109.50513 * 297.54079 * 22 21 20 36 36 H 1.09002 * 109.50931 * 57.67274 * 22 21 20 37 37 H 1.09003 * 109.50731 * 296.90513 * 23 22 21 38 38 H 1.09000 * 109.54203 * 176.80475 * 23 22 21 39 39 H 1.08995 * 109.50701 * 298.73590 * 25 24 23 40 40 H 1.08997 * 109.54441 * 178.62462 * 25 24 23 41 41 H 1.09004 * 109.50586 * 302.32610 * 26 21 20 42 42 H 1.09003 * 109.50953 * 62.45770 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1957 -5.9765 0.0017 14 6 1.7290 -7.2966 0.0008 15 6 0.3658 -7.5522 -0.0013 16 6 -0.0934 -8.8562 -0.0017 17 6 0.8027 -9.9091 -0.0007 18 6 2.1643 -9.6636 -0.0040 19 17 3.2856 -10.9890 -0.0095 20 6 2.6333 -8.3578 0.0022 21 7 4.0116 -8.1063 0.0039 22 6 4.6409 -8.6115 -1.2250 23 6 6.1317 -8.2637 -1.2087 24 8 6.7305 -8.8093 -0.0301 25 6 6.1424 -8.3380 1.1854 26 6 4.6516 -8.6865 1.1933 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 -0.0002 29 1 0.6181 -4.9209 -0.8896 30 1 0.6161 -4.9206 0.8903 31 1 3.1494 -5.7993 0.0021 32 1 -0.3372 -6.7323 -0.0018 33 1 -1.1554 -9.0531 -0.0029 34 1 0.4389 -10.9259 -0.0014 35 1 4.5201 -9.6935 -1.2774 36 1 4.1688 -8.1495 -2.0921 37 1 6.2529 -7.1804 -1.2105 38 1 6.6141 -8.6853 -2.0905 39 1 6.2638 -7.2569 1.2533 40 1 6.6318 -8.8133 2.0355 41 1 4.1874 -8.2793 2.0916 42 1 4.5311 -9.7698 1.1796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072312449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:20 Heat of formation + Delta-G solvation = -39.705268 kcal Electronic energy + Delta-G solvation = -27228.365514 eV Core-core repulsion = 23234.610049 eV Total energy + Delta-G solvation = -3993.755465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.54726 -38.89414 -38.28733 -36.82170 -35.50410 -34.99018 -33.96516 -31.42576 -31.22374 -30.21249 -29.70251 -27.04240 -26.14408 -24.50762 -24.05182 -22.45157 -21.55585 -20.48152 -19.43924 -18.14134 -17.84559 -17.04208 -16.22549 -16.20266 -15.73116 -15.24682 -15.21776 -15.00940 -14.81890 -14.78583 -14.47643 -14.12718 -14.04298 -13.77103 -13.66766 -13.37001 -12.62091 -12.37900 -12.37373 -11.96137 -11.83955 -11.64877 -11.59055 -11.52449 -11.18352 -11.12201 -10.88594 -10.61349 -10.43219 -10.34755 -9.95841 -9.75576 -9.66708 -8.72849 -8.65555 -8.39648 -8.13290 -7.28179 -6.55024 -3.96648 1.08013 1.49100 1.93086 3.07942 3.20473 3.26992 3.54043 3.63319 3.66030 3.71569 3.84773 4.10507 4.81515 4.86874 4.87827 4.89381 5.12205 5.12940 5.13308 5.17633 5.22289 5.36355 5.39266 5.45456 5.50743 5.59687 5.64029 5.78535 5.82024 5.85323 5.92750 6.04576 6.06438 6.19202 6.40962 6.60892 6.77559 7.03516 7.08438 7.43424 7.51834 7.89939 8.11192 8.42485 9.02338 9.35805 9.84245 10.62062 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.002907 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.886545 B = 9629.348886 C =11123.241070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.429 3.571 11 O -0.590 6.590 12 C 0.109 3.891 13 N -0.705 5.705 14 C 0.265 3.735 15 C -0.199 4.199 16 C -0.056 4.056 17 C -0.178 4.178 18 C -0.014 4.014 19 Cl -0.066 7.066 20 C 0.008 3.992 21 N -0.485 5.485 22 C 0.009 3.991 23 C 0.065 3.935 24 O -0.386 6.386 25 C 0.065 3.935 26 C 0.004 3.996 27 H 0.273 0.727 28 H 0.395 0.605 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.422 0.578 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -19.692 -0.042 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.215 3.785 11 O -0.476 6.476 12 C -0.019 4.019 13 N -0.334 5.334 14 C 0.155 3.845 15 C -0.223 4.223 16 C -0.075 4.075 17 C -0.200 4.200 18 C -0.043 4.043 19 Cl -0.037 7.037 20 C -0.092 4.092 21 N -0.207 5.207 22 C -0.118 4.118 23 C -0.012 4.012 24 O -0.304 6.304 25 C -0.012 4.012 26 C -0.123 4.123 27 H 0.083 0.917 28 H 0.228 0.772 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.263 0.737 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.367 -19.018 -0.031 19.164 hybrid contribution -0.361 0.212 -0.011 0.418 sum 2.006 -18.806 -0.042 18.912 Atomic orbital electron populations 1.69609 1.05997 1.28400 1.49664 1.25302 0.95663 0.99895 0.96828 0.85772 0.79746 0.80844 0.77839 1.19118 1.20602 1.20606 1.19774 0.93489 0.81990 1.48010 0.87675 1.41795 1.09350 1.04483 1.63035 1.19694 0.88372 0.84872 0.85586 1.90528 1.13689 1.86682 1.56667 1.21018 0.92240 0.86695 1.01994 1.44627 1.10593 1.00269 1.77871 1.17510 0.91317 0.84211 0.91462 1.20777 0.93300 0.97772 1.10404 1.20823 0.99263 0.91411 0.96002 1.20628 0.90463 0.99846 1.09081 1.21450 0.91056 0.87595 1.04225 1.98319 1.61593 1.47460 1.96310 1.17848 0.89331 0.89175 1.12854 1.59575 0.99688 1.58744 1.02682 1.23057 0.95671 1.00486 0.92588 1.22651 0.91377 0.99118 0.88079 1.87946 1.58898 1.69485 1.14090 1.22646 0.91541 0.99847 0.87167 1.23153 0.95546 1.00320 0.93266 0.91672 0.77189 0.90534 0.90525 0.73678 0.84989 0.85258 0.85682 0.92000 0.89817 0.91993 0.88570 0.92055 0.88593 0.89864 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.40 13.05 55.50 0.72 -22.68 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 8 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.55 -13.23 5.29 -10.97 -0.06 -13.29 16 10 C 0.43 9.57 7.85 -10.99 -0.09 9.48 16 11 O -0.59 -15.20 15.24 5.55 0.08 -15.11 16 12 C 0.11 1.81 5.40 -5.20 -0.03 1.78 16 13 N -0.70 -11.50 5.70 -59.63 -0.34 -11.84 16 14 C 0.27 3.79 6.67 -83.51 -0.56 3.23 16 15 C -0.20 -2.42 9.31 -39.41 -0.37 -2.79 16 16 C -0.06 -0.58 10.04 -39.57 -0.40 -0.98 16 17 C -0.18 -1.95 9.82 -39.53 -0.39 -2.34 16 18 C -0.01 -0.17 5.97 -39.35 -0.23 -0.41 16 19 Cl -0.07 -0.75 22.68 -51.86 -1.18 -1.92 16 20 C 0.01 0.11 4.76 -83.45 -0.40 -0.29 16 21 N -0.49 -6.54 3.86 -170.56 -0.66 -7.19 16 22 C 0.01 0.11 5.31 -3.71 -0.02 0.09 16 23 C 0.06 0.76 7.01 37.21 0.26 1.02 16 24 O -0.39 -5.00 10.83 -35.23 -0.38 -5.38 16 25 C 0.07 0.76 7.01 37.21 0.26 1.02 16 26 C 0.00 0.05 5.27 -3.71 -0.02 0.03 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.39 8.96 7.90 -40.82 -0.32 8.64 16 29 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 30 H 0.08 1.14 7.96 -51.93 -0.41 0.72 16 31 H 0.42 7.77 6.72 -40.82 -0.27 7.50 16 32 H 0.13 1.45 6.74 -52.49 -0.35 1.10 16 33 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.06 0.76 5.12 -51.93 -0.27 0.49 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.80 4.78 -51.93 -0.25 0.56 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -29.49 354.71 -8.88 -38.37 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -5.18 Total: 16.24 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.21 Total: 2.15 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.33 Total: -55.00 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.30 Total: -20.49 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.18 Total: -1.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.49 -8.88 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072312449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.337 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds