Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35129 * 125.61265 * 2 1 4 4 C 1.40369 * 107.11278 * 180.02562 * 3 2 1 5 5 C 1.36549 * 106.70542 * 359.97438 * 4 3 2 6 6 C 1.46663 * 125.98425 * 179.73223 * 5 4 3 7 7 O 1.21694 * 119.99820 * 7.39185 * 6 5 4 8 8 N 1.34777 * 119.99621 * 187.39203 * 6 5 4 9 9 C 1.47070 * 120.88470 * 6.78588 * 8 6 5 10 10 C 1.53693 * 108.27815 * 128.75506 * 9 8 6 11 11 N 1.46896 * 109.25569 * 54.08249 * 10 9 8 12 12 C 1.46903 * 111.00262 * 172.60960 * 11 10 9 13 13 C 1.52999 * 109.46940 * 294.30504 * 12 11 10 14 14 C 1.53002 * 109.46973 * 179.97438 * 13 12 11 15 15 S 1.81000 * 109.47099 * 179.97438 * 14 13 12 16 16 C 1.76194 * 100.00225 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00395 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99671 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00190 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47347 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47364 * 120.00445 * 20 18 16 23 23 H 1.48506 * 109.47265 * 240.00260 * 20 18 16 24 24 C 1.46899 * 111.27280 * 296.75874 * 11 10 9 25 25 C 1.47083 * 120.87684 * 187.06681 * 8 6 5 26 26 O 1.33926 * 125.61588 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46475 * 90.00545 * 1 2 3 28 28 H 1.09004 * 109.47301 * 210.00029 * 1 2 3 29 29 H 1.08995 * 109.47143 * 330.00734 * 1 2 3 30 30 H 1.07996 * 126.44882 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.64810 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.63056 * 248.52299 * 9 8 6 33 33 H 1.08999 * 109.62907 * 9.10643 * 9 8 6 34 34 H 1.09007 * 109.64899 * 294.08206 * 10 9 8 35 35 H 1.09006 * 109.42612 * 173.94875 * 10 9 8 36 36 H 1.08997 * 109.47002 * 54.30190 * 12 11 10 37 37 H 1.08998 * 109.47450 * 174.30386 * 12 11 10 38 38 H 1.08999 * 109.47265 * 299.99213 * 13 12 11 39 39 H 1.08992 * 109.47551 * 59.99871 * 13 12 11 40 40 H 1.08997 * 109.47220 * 299.99838 * 14 13 12 41 41 H 1.08999 * 109.46846 * 60.00420 * 14 13 12 42 42 H 0.97006 * 119.99547 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.49237 * 303.14455 * 24 11 10 44 44 H 1.09000 * 109.49576 * 183.06590 * 24 11 10 45 45 H 1.09000 * 109.62593 * 350.89499 * 25 8 6 46 46 H 1.08999 * 109.63102 * 111.47714 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7116 -0.0004 6 6 4.7415 -1.6101 -0.0063 7 8 5.8633 -1.1568 0.1234 8 7 4.5641 -2.9378 -0.1556 9 6 3.2368 -3.4925 -0.4613 10 6 3.3711 -4.4206 -1.6790 11 7 4.4150 -5.4195 -1.4140 12 6 4.4564 -6.4326 -2.4770 13 6 3.1571 -7.2403 -2.4625 14 6 3.1999 -8.2951 -3.5701 15 16 1.6631 -9.2511 -3.5524 16 6 1.9759 -10.3579 -4.8872 17 1 2.9077 -10.2994 -5.4302 18 6 1.0254 -11.3059 -5.2401 19 7 -0.1100 -11.3776 -4.5780 20 14 1.3568 -12.4788 -6.6557 21 1 2.6949 -12.1927 -7.2327 22 1 1.3203 -13.8776 -6.1585 23 1 0.3184 -12.2981 -7.7018 24 6 5.7283 -4.7847 -1.2405 25 6 5.6918 -3.8709 -0.0109 26 8 2.2870 -1.0887 -0.0005 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9613 2.1260 0.0004 31 1 4.5113 1.2703 -0.0011 32 1 2.8701 -4.0581 0.3953 33 1 2.5454 -2.6819 -0.6916 34 1 3.6423 -3.8354 -2.5578 35 1 2.4214 -4.9254 -1.8566 36 1 4.5677 -5.9409 -3.4434 37 1 5.3013 -7.1005 -2.3098 38 1 3.0457 -7.7322 -1.4962 39 1 2.3121 -6.5725 -2.6298 40 1 3.3110 -7.8030 -4.5363 41 1 4.0448 -8.9631 -3.4031 42 1 -0.7744 -12.0398 -4.8249 43 1 5.9667 -4.1944 -2.1253 44 1 6.4882 -5.5534 -1.1001 45 1 6.6243 -3.3106 0.0567 46 1 5.5566 -4.4722 0.8881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074989886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = -13.344039 kcal Electronic energy + Delta-G solvation = -26313.735818 eV Core-core repulsion = 22524.426173 eV Total energy + Delta-G solvation = -3789.309645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.13720 -40.25780 -38.37245 -35.54493 -33.72841 -32.77124 -32.44286 -32.27303 -31.36561 -28.59214 -27.18898 -25.67183 -24.52136 -24.14338 -22.75025 -21.97069 -21.05828 -20.74942 -19.88812 -17.90796 -17.47281 -16.99211 -16.65830 -15.87499 -15.54417 -15.44766 -15.18151 -14.87256 -14.81394 -14.46869 -14.31329 -13.98789 -13.65821 -13.56942 -13.47523 -13.44662 -13.22890 -12.90137 -12.54577 -12.37212 -12.00023 -11.92345 -11.68049 -11.52804 -11.33473 -11.18918 -11.08390 -10.77970 -10.62845 -10.52671 -10.36935 -10.28755 -9.56522 -9.16839 -9.07668 -8.80661 -8.41962 -8.31086 -6.53884 -6.24150 -3.94154 0.69143 1.95191 2.16303 2.66877 2.85247 3.19900 3.20949 3.28913 3.50372 3.81784 4.03711 4.21417 4.36096 4.52463 4.63402 4.71870 4.87283 4.89126 4.98579 5.00004 5.06907 5.10295 5.12068 5.24299 5.28524 5.32915 5.35676 5.45350 5.46373 5.51403 5.55704 5.62178 5.69810 5.71176 5.81190 5.89591 6.00035 6.03914 6.13673 6.31000 6.50378 6.55599 6.70417 6.89451 6.92345 7.04173 7.59828 7.69119 8.35788 9.22453 10.84066 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.001988 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.811549 B =14079.164146 C =15341.126503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.017 3.983 3 C -0.225 4.225 4 C -0.114 4.114 5 C -0.082 4.082 6 C 0.604 3.396 7 O -0.527 6.527 8 N -0.604 5.604 9 C 0.103 3.897 10 C 0.037 3.963 11 N -0.537 5.537 12 C 0.061 3.939 13 C -0.094 4.094 14 C -0.113 4.113 15 S -0.132 6.132 16 C -0.515 4.515 17 H 0.072 0.928 18 C 0.070 3.930 19 N -0.869 5.869 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.041 3.959 25 C 0.118 3.882 26 O -0.155 6.155 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.038 0.962 35 H 0.099 0.901 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.266 0.734 43 H 0.038 0.962 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 24.017 10.645 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C -0.244 4.244 4 C -0.135 4.135 5 C -0.133 4.133 6 C 0.392 3.608 7 O -0.405 6.405 8 N -0.336 5.336 9 C -0.020 4.020 10 C -0.091 4.091 11 N -0.262 5.262 12 C -0.068 4.068 13 C -0.132 4.132 14 C -0.262 4.262 15 S 0.096 5.904 16 C -0.664 4.664 17 H 0.091 0.909 18 C -0.139 4.139 19 N -0.505 5.505 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.088 4.088 25 C -0.004 4.004 26 O -0.052 6.052 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.399 23.670 11.837 26.828 hybrid contribution 1.428 -0.347 -2.531 2.927 sum 5.827 23.323 9.306 25.778 Atomic orbital electron populations 1.20460 0.84430 1.04663 1.04215 1.23016 0.94539 0.84495 1.01462 1.21593 0.92268 0.99857 1.10662 1.21944 0.98677 0.92856 0.99985 1.21956 0.81905 0.94495 1.14976 1.16680 0.86088 0.81067 0.76951 1.90862 1.22556 1.75559 1.51545 1.48083 1.11050 1.05274 1.69232 1.22399 0.83311 0.97773 0.98476 1.22644 0.97402 0.93168 0.95906 1.61951 1.04481 1.13935 1.45798 1.22201 0.99801 0.93294 0.91522 1.21290 0.95931 0.96584 0.99416 1.23229 1.03382 0.99850 0.99747 1.84615 1.19013 1.40091 1.46702 1.22731 1.06045 1.19607 1.17969 0.90942 1.25021 0.94559 0.97062 0.97228 1.70036 1.06684 1.34375 1.39422 0.86113 0.78420 0.80008 0.80973 1.19631 1.20557 1.20587 1.22479 0.91949 0.97252 0.97109 1.21813 0.89729 0.90426 0.98464 1.84193 1.16066 1.34053 1.70934 0.89339 0.89890 0.88943 0.82672 0.82308 0.89930 0.87718 0.94410 0.88317 0.94860 0.90541 0.90636 0.91700 0.92391 0.92104 0.92372 0.94393 0.89132 0.88483 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.41 36.01 0.37 0.04 16 2 C 0.02 0.13 7.31 -35.41 -0.26 -0.13 16 3 C -0.22 -1.72 10.77 -39.89 -0.43 -2.15 16 4 C -0.11 -1.10 10.63 -39.39 -0.42 -1.52 16 5 C -0.08 -0.90 6.77 -36.79 -0.25 -1.15 16 6 C 0.60 7.49 7.66 -12.86 -0.10 7.40 16 7 O -0.53 -7.78 16.33 5.19 0.08 -7.70 16 8 N -0.60 -6.67 3.00 -173.73 -0.52 -7.19 16 9 C 0.10 1.02 6.26 -3.37 -0.02 1.00 16 10 C 0.04 0.41 5.48 -3.47 -0.02 0.39 16 11 N -0.54 -6.21 4.63 -234.02 -1.08 -7.29 16 12 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 13 C -0.09 -1.46 5.15 -26.73 -0.14 -1.60 16 14 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 15 S -0.13 -3.43 21.44 -107.50 -2.30 -5.73 16 16 C -0.52 -14.70 9.50 30.94 0.29 -14.41 16 17 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 18 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 19 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 20 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.04 0.41 5.62 -3.70 -0.02 0.39 16 25 C 0.12 1.18 6.61 -3.60 -0.02 1.15 16 26 O -0.16 -1.50 7.27 5.02 0.04 -1.46 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 1.00 4.37 -52.57 -0.23 0.77 16 34 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.10 1.09 6.16 -51.93 -0.32 0.77 16 36 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.08 0.95 7.97 -51.93 -0.41 0.53 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16 40 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 41 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.80 7.99 -51.93 -0.41 0.39 16 45 H 0.10 0.99 7.04 -51.93 -0.37 0.62 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -33.47 386.77 -10.28 -43.74 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.12 Total: -1.57 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.91 Total: -9.95 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: -0.87 Total: -39.59 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.12 Total: -9.16 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.30 Total: -5.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.47 -10.28 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074989886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.399 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds