Wall clock time and date at job start Tue Mar 31 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00088 * 2 1 4 4 C 1.53002 * 109.47075 * 293.95269 * 3 2 1 5 5 C 1.52998 * 109.47287 * 180.02562 * 4 3 2 6 6 C 1.50692 * 109.47162 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00301 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99935 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99939 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00113 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47164 * 59.99774 * 10 8 6 12 12 H 1.48492 * 109.47546 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47135 * 300.00126 * 10 8 6 14 14 C 1.46899 * 110.99598 * 123.94791 * 2 1 3 15 15 C 1.53001 * 109.47021 * 163.97966 * 14 2 1 16 16 H 1.09002 * 109.46802 * 64.00872 * 15 14 2 17 17 C 1.50707 * 109.47223 * 184.00283 * 15 14 2 18 18 C 1.33388 * 125.20160 * 249.91584 * 17 15 14 19 19 C 1.38421 * 114.91597 * 179.97438 * 18 17 15 20 20 C 1.33393 * 114.92700 * 0.24587 * 19 18 17 21 21 S 1.75877 * 125.20192 * 69.87276 * 17 15 14 22 22 N 1.46891 * 109.47415 * 304.00703 * 15 14 2 23 23 C 1.47017 * 111.00066 * 313.09615 * 22 15 14 24 24 C 1.53094 * 109.26058 * 177.60566 * 23 22 15 25 25 O 1.43022 * 109.25880 * 56.85221 * 24 23 22 26 26 C 1.43018 * 113.73290 * 301.33108 * 25 24 23 27 27 C 1.47012 * 111.00165 * 189.46269 * 22 15 14 28 28 H 1.08998 * 109.47288 * 301.41019 * 1 2 3 29 29 H 1.08999 * 109.46463 * 61.40955 * 1 2 3 30 30 H 1.08995 * 109.46983 * 181.40200 * 1 2 3 31 31 H 1.09001 * 109.47069 * 53.94855 * 3 2 1 32 32 H 1.08996 * 109.47112 * 173.94629 * 3 2 1 33 33 H 1.09004 * 109.46514 * 300.00130 * 4 3 2 34 34 H 1.08998 * 109.47381 * 59.99252 * 4 3 2 35 35 H 1.09001 * 109.46702 * 299.99491 * 5 4 3 36 36 H 1.08996 * 109.47267 * 59.99135 * 5 4 3 37 37 H 0.97002 * 119.99907 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.47170 * 43.98367 * 14 2 1 39 39 H 1.08997 * 109.47564 * 283.98002 * 14 2 1 40 40 H 1.07994 * 122.54090 * 359.94190 * 18 17 15 41 41 H 1.08008 * 122.53915 * 179.97438 * 19 18 17 42 42 H 1.07991 * 125.20839 * 179.75095 * 20 19 18 43 43 H 1.09001 * 109.50685 * 297.54313 * 23 22 15 44 44 H 1.09001 * 109.50563 * 57.66976 * 23 22 15 45 45 H 1.08991 * 109.50880 * 296.91444 * 24 23 22 46 46 H 1.09005 * 109.50974 * 176.77836 * 24 23 22 47 47 H 1.09001 * 109.50351 * 298.72979 * 26 25 24 48 48 H 1.09003 * 109.54022 * 178.62750 * 26 25 24 49 49 H 1.09002 * 109.50555 * 302.32272 * 27 22 15 50 50 H 1.08994 * 109.51052 * 62.45597 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1804 3.4856 -1.3186 6 6 1.8224 4.1610 -2.6173 7 1 1.2601 3.6252 -3.3676 8 6 2.2128 5.4632 -2.8476 9 7 2.8972 6.1159 -1.9337 10 14 1.7698 6.3002 -4.4577 11 1 0.2926 6.3369 -4.6065 12 1 2.3013 7.6868 -4.4575 13 1 2.3625 5.5426 -5.5890 14 6 1.9954 -0.7659 1.1377 15 6 3.4725 -1.0846 0.8982 16 1 4.0438 -0.1568 0.8665 17 6 3.9869 -1.9532 2.0172 18 6 4.8533 -1.5665 2.9548 19 6 5.1807 -2.5395 3.8832 20 6 4.5842 -3.7179 3.6968 21 16 3.5357 -3.6315 2.2873 22 7 3.6195 -1.7941 -0.3796 23 6 2.6329 -2.8776 -0.4971 24 6 2.7818 -3.5501 -1.8644 25 8 4.1239 -4.0212 -2.0147 26 6 5.1108 -2.9918 -1.9064 27 6 4.9854 -2.3137 -0.5396 28 1 -0.3634 0.5356 0.8770 29 1 -0.3632 0.4918 -0.9024 30 1 -0.3633 -1.0273 0.0251 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3444 0.1084 33 1 2.0659 1.5014 -2.1491 34 1 0.5473 2.0844 -1.4267 35 1 1.7463 4.0418 -0.4877 36 1 3.2646 3.4582 -1.2104 37 1 3.1715 7.0321 -2.0956 38 1 1.4352 -1.6953 1.2403 39 1 1.8938 -0.1778 2.0498 40 1 5.2683 -0.5699 2.9867 41 1 5.8705 -2.3596 4.6946 42 1 4.7222 -4.5908 4.3175 43 1 2.8033 -3.6120 0.2902 44 1 1.6279 -2.4667 -0.4011 45 1 2.5590 -2.8291 -2.6508 46 1 2.0912 -4.3906 -1.9339 47 1 4.9556 -2.2546 -2.6942 48 1 6.1048 -3.4278 -2.0067 49 1 5.6977 -1.4911 -0.4747 50 1 5.1935 -3.0390 0.2469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075603883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:46 Heat of formation + Delta-G solvation = 3.758493 kcal Electronic energy + Delta-G solvation = -28275.973338 eV Core-core repulsion = 24623.238410 eV Total energy + Delta-G solvation = -3652.734929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.15896 -38.22273 -37.49595 -35.69924 -33.56763 -31.66983 -31.19724 -30.89057 -28.39497 -27.02807 -26.60812 -24.70001 -24.29346 -23.47676 -22.38516 -21.08741 -20.24502 -19.81154 -19.26914 -17.56732 -16.50413 -16.22002 -16.10230 -15.87977 -15.33804 -15.25845 -15.04260 -14.69412 -14.46403 -14.44297 -14.13777 -13.80460 -13.23668 -13.11110 -12.89278 -12.76356 -12.42882 -12.36050 -12.23479 -11.91707 -11.80900 -11.66707 -11.54869 -11.32854 -11.22496 -10.90481 -10.75496 -10.64814 -10.56564 -10.47903 -10.37713 -9.71749 -9.53047 -9.27027 -9.02478 -8.91846 -8.68881 -8.29770 -8.27625 -7.99066 -5.95513 -3.97073 0.78748 1.42118 1.80787 2.55176 3.36332 3.40342 3.43218 3.65300 3.85864 4.07764 4.49570 4.61881 4.71469 4.85901 4.88849 5.00528 5.11917 5.13847 5.18896 5.26515 5.33608 5.38804 5.40325 5.45379 5.48115 5.54071 5.62067 5.66045 5.72745 5.75497 5.83641 5.87542 5.92570 5.97552 6.04891 6.09235 6.14551 6.27713 6.40894 6.77422 6.80635 6.91582 6.92534 7.09954 7.19189 7.38075 7.44252 7.73885 7.90155 8.05691 8.49467 9.10108 9.66572 11.15958 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.002858 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.128773 B = 9795.868333 C =10467.986071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.524 5.524 3 C 0.059 3.941 4 C -0.101 4.101 5 C 0.023 3.977 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.060 3.940 15 C 0.159 3.841 16 H 0.106 0.894 17 C -0.202 4.202 18 C -0.130 4.130 19 C -0.134 4.134 20 C -0.232 4.232 21 S 0.109 5.891 22 N -0.495 5.495 23 C 0.015 3.985 24 C 0.067 3.933 25 O -0.388 6.388 26 C 0.066 3.934 27 C 0.012 3.988 28 H 0.020 0.980 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.011 0.989 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.158 0.842 43 H 0.038 0.962 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 -22.735 10.108 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.248 5.248 3 C -0.068 4.068 4 C -0.139 4.139 5 C -0.015 4.015 6 C -0.555 4.555 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.069 4.069 15 C 0.048 3.952 16 H 0.124 0.876 17 C -0.322 4.322 18 C -0.161 4.161 19 C -0.165 4.165 20 C -0.367 4.367 21 S 0.372 5.628 22 N -0.217 5.217 23 C -0.113 4.113 24 C -0.010 4.010 25 O -0.307 6.307 26 C -0.011 4.011 27 C -0.117 4.117 28 H 0.039 0.961 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.056 0.944 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.112 0.888 49 H 0.103 0.897 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.572 -23.680 8.575 25.233 hybrid contribution 0.673 1.691 1.613 2.432 sum 2.245 -21.988 10.188 24.338 Atomic orbital electron populations 1.22409 0.87866 1.00759 1.01381 1.62009 1.06967 1.15152 1.40635 1.22309 0.99559 0.85942 0.98971 1.21603 0.99801 0.97975 0.94547 1.19052 0.96152 0.89467 0.96782 1.21220 1.34655 0.97542 1.02074 0.92778 1.25019 0.95285 0.97525 0.96655 1.69956 1.38466 1.11281 1.34008 0.86680 0.78725 0.78479 0.84245 1.20314 1.21369 1.20219 1.22217 0.93378 0.98457 0.92866 1.20491 0.96741 0.95278 0.82690 0.87606 1.25571 1.04848 0.98271 1.03512 1.20181 0.99600 1.01123 0.95230 1.20155 1.02514 0.92684 1.01138 1.25962 1.05282 1.02275 1.03141 1.84495 1.45921 1.08835 1.23522 1.62389 1.02923 1.25677 1.30754 1.23076 0.98554 0.92352 0.97348 1.22637 0.83721 0.98792 0.95899 1.87949 1.15423 1.34143 1.93159 1.22634 0.92074 0.90506 0.95933 1.22884 0.91215 0.99470 0.98095 0.96122 0.90432 0.92452 0.95730 0.91297 0.92438 0.93684 0.97050 0.96721 0.93052 0.91073 0.94100 0.84224 0.84616 0.82418 0.94434 0.88238 0.91613 0.88879 0.91910 0.88831 0.89705 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.28 60.07 0.56 0.87 16 2 N -0.52 -7.37 3.99 -242.92 -0.97 -8.34 16 3 C 0.06 1.01 4.81 -3.82 -0.02 0.99 16 4 C -0.10 -2.09 5.08 -26.73 -0.14 -2.23 16 5 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 6 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.06 0.72 3.66 -3.82 -0.01 0.71 16 15 C 0.16 1.88 2.42 -68.87 -0.17 1.71 16 16 H 0.11 1.37 6.71 -51.93 -0.35 1.02 16 17 C -0.20 -2.19 3.71 -36.00 -0.13 -2.32 16 18 C -0.13 -1.34 10.02 -41.21 -0.41 -1.75 16 19 C -0.13 -1.26 10.18 -41.21 -0.42 -1.68 16 20 C -0.23 -2.12 11.23 29.04 0.33 -1.80 16 21 S 0.11 1.08 18.95 -107.50 -2.04 -0.95 16 22 N -0.49 -5.98 4.58 -227.72 -1.04 -7.02 16 23 C 0.02 0.17 4.63 -3.71 -0.02 0.15 16 24 C 0.07 0.72 7.01 37.21 0.26 0.99 16 25 O -0.39 -4.75 10.83 -35.23 -0.38 -5.13 16 26 C 0.07 0.72 7.01 37.21 0.26 0.98 16 27 C 0.01 0.13 5.15 -3.71 -0.02 0.11 16 28 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 29 H 0.08 1.08 6.54 -51.93 -0.34 0.74 16 30 H 0.06 0.61 7.97 -51.93 -0.41 0.20 16 31 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 32 H 0.07 1.18 6.48 -51.93 -0.34 0.85 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.92 6.58 -51.93 -0.34 0.58 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.07 0.79 6.27 -51.93 -0.33 0.47 16 39 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 40 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.04 0.41 4.36 -31.22 -0.14 0.28 16 44 H 0.10 1.12 5.79 -51.93 -0.30 0.82 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.05 0.54 6.20 -51.93 -0.32 0.21 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -30.92 392.76 -11.60 -42.51 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.32 Total: -1.01 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.48 Total: -16.38 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -1.27 Total: -41.82 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.38 Total: -5.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.04 Total: -0.95 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.92 -11.60 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.270 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds