Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 111.00060 * 2 1 4 4 C 1.53006 * 109.47243 * 293.95951 * 3 2 1 5 5 C 1.52995 * 109.47003 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47196 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99498 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00149 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00194 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99871 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46939 * 90.00558 * 10 8 6 12 12 H 1.48498 * 109.47570 * 210.00665 * 10 8 6 13 13 H 1.48501 * 109.47527 * 330.00581 * 10 8 6 14 14 C 1.46896 * 111.00467 * 123.95794 * 2 1 3 15 15 C 1.53004 * 109.47072 * 66.04314 * 14 2 1 16 16 H 1.09002 * 109.46753 * 294.65616 * 15 14 2 17 17 C 1.50707 * 109.46901 * 174.65984 * 15 14 2 18 18 C 1.33388 * 125.20102 * 109.27472 * 17 15 14 19 19 C 1.38426 * 114.91742 * 179.97438 * 18 17 15 20 20 C 1.33391 * 114.92202 * 0.02562 * 19 18 17 21 21 S 1.75879 * 125.20250 * 288.96634 * 17 15 14 22 22 N 1.46891 * 109.47173 * 54.65930 * 15 14 2 23 23 C 1.47010 * 111.00027 * 46.94723 * 22 15 14 24 24 C 1.53102 * 109.29480 * 182.37060 * 23 22 15 25 25 O 1.43020 * 109.25611 * 303.22167 * 24 23 22 26 26 C 1.43022 * 113.77783 * 58.59713 * 25 24 23 27 27 C 1.47013 * 111.00087 * 170.58167 * 22 15 14 28 28 H 1.09004 * 109.46803 * 296.04018 * 1 2 3 29 29 H 1.08997 * 109.47725 * 56.04238 * 1 2 3 30 30 H 1.09006 * 109.47380 * 176.04488 * 1 2 3 31 31 H 1.09002 * 109.47266 * 53.95848 * 3 2 1 32 32 H 1.09003 * 109.47415 * 173.95817 * 3 2 1 33 33 H 1.09005 * 109.46893 * 299.99588 * 4 3 2 34 34 H 1.08994 * 109.47235 * 59.99746 * 4 3 2 35 35 H 1.09002 * 109.47195 * 299.99707 * 5 4 3 36 36 H 1.09003 * 109.47725 * 59.99824 * 5 4 3 37 37 H 0.96998 * 120.00178 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47033 * 306.04499 * 14 2 1 39 39 H 1.08997 * 109.47475 * 186.04403 * 14 2 1 40 40 H 1.07994 * 122.54279 * 359.95217 * 18 17 15 41 41 H 1.07997 * 122.53707 * 180.02562 * 19 18 17 42 42 H 1.08001 * 125.20211 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.50719 * 302.32377 * 23 22 15 44 44 H 1.09002 * 109.50778 * 62.41454 * 23 22 15 45 45 H 1.09005 * 109.50672 * 63.10749 * 24 23 22 46 46 H 1.09000 * 109.50933 * 183.23604 * 24 23 22 47 47 H 1.09000 * 109.50507 * 181.42150 * 26 25 24 48 48 H 1.08999 * 109.53668 * 61.31156 * 26 25 24 49 49 H 1.08994 * 109.50690 * 297.54250 * 27 22 15 50 50 H 1.09005 * 109.50765 * 57.63105 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 6 1.8221 4.1612 -2.6171 7 1 1.2597 3.6253 -3.3674 8 6 2.2125 5.4633 -2.8474 9 7 2.8978 6.1157 -1.9339 10 14 1.7693 6.3005 -4.4574 11 1 0.4569 6.9810 -4.3165 12 1 2.8118 7.3014 -4.7983 13 1 1.6866 5.2845 -5.5373 14 6 1.9955 -0.7660 1.1375 15 6 1.6315 -2.2427 0.9702 16 1 0.5492 -2.3588 1.0274 17 6 2.2817 -3.0476 2.0659 18 6 1.6382 -3.6213 3.0838 19 6 2.4469 -4.3122 3.9698 20 6 3.7470 -4.2991 3.6716 21 16 4.0039 -3.3805 2.1940 22 7 2.1068 -2.7193 -0.3354 23 6 3.4957 -2.3012 -0.5752 24 6 3.9309 -2.7663 -1.9674 25 8 3.7670 -4.1838 -2.0637 26 6 2.4259 -4.6260 -1.8364 27 6 1.9767 -4.1797 -0.4425 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3634 -1.0253 -0.0709 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3444 0.1082 33 1 2.0657 1.5016 -2.1492 34 1 0.5471 2.0845 -1.4264 35 1 1.7463 4.0418 -0.4875 36 1 3.2645 3.4582 -1.2105 37 1 3.1728 7.0317 -2.0960 38 1 1.5612 -0.3873 2.0627 39 1 3.0798 -0.6612 1.1755 40 1 0.5677 -3.5518 3.2075 41 1 2.0548 -4.8232 4.8367 42 1 4.5225 -4.7830 4.2468 43 1 3.5641 -1.2149 -0.5165 44 1 4.1454 -2.7480 0.1775 45 1 3.3163 -2.2773 -2.7232 46 1 4.9780 -2.5086 -2.1264 47 1 2.3853 -5.7133 -1.9012 48 1 1.7666 -4.1916 -2.5878 49 1 2.6021 -4.6571 0.3117 50 1 0.9362 -4.4648 -0.2862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075603885.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = 3.725370 kcal Electronic energy + Delta-G solvation = -28109.979076 eV Core-core repulsion = 24457.242711 eV Total energy + Delta-G solvation = -3652.736365 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.20619 -38.25411 -37.51961 -35.75803 -33.59174 -31.78026 -31.24871 -30.73578 -28.28191 -27.18202 -26.67894 -24.88520 -24.19040 -23.66970 -22.17470 -21.12973 -20.25016 -19.82695 -19.33044 -17.61091 -16.52240 -16.23626 -16.16837 -15.89450 -15.41601 -15.29336 -15.09424 -14.78987 -14.61459 -14.35508 -13.99653 -13.89419 -13.20217 -13.15743 -12.91300 -12.84718 -12.49435 -12.36072 -12.21389 -12.05971 -11.74187 -11.60573 -11.57107 -11.33438 -11.23112 -10.88046 -10.79086 -10.67253 -10.54580 -10.48899 -10.45463 -9.74304 -9.57645 -9.31854 -9.06164 -8.92539 -8.72065 -8.34979 -8.31596 -7.99479 -5.97096 -3.98877 0.74849 1.39152 1.78722 2.49675 3.33934 3.40138 3.43991 3.59874 3.83506 4.06486 4.48795 4.57959 4.65558 4.83000 4.84444 4.96417 5.08647 5.09388 5.15413 5.21942 5.29063 5.32617 5.38808 5.44991 5.48828 5.56783 5.58888 5.62534 5.71216 5.72542 5.84013 5.87547 5.90701 5.95352 6.02637 6.05055 6.21489 6.22405 6.35231 6.73335 6.77854 6.83697 6.86441 7.08342 7.16008 7.38217 7.42267 7.71924 7.86947 8.03782 8.47275 9.08534 9.65070 11.14383 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.002663 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.525950 B =10513.793184 C =11328.773028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.524 5.524 3 C 0.055 3.945 4 C -0.102 4.102 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.059 3.941 15 C 0.160 3.840 16 H 0.101 0.899 17 C -0.206 4.206 18 C -0.132 4.132 19 C -0.137 4.137 20 C -0.232 4.232 21 S 0.119 5.881 22 N -0.498 5.498 23 C 0.015 3.985 24 C 0.066 3.934 25 O -0.388 6.388 26 C 0.067 3.933 27 C 0.011 3.989 28 H 0.017 0.983 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.012 0.988 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.159 0.841 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.912 -24.805 10.074 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.247 5.247 3 C -0.072 4.072 4 C -0.140 4.140 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.070 4.070 15 C 0.048 3.952 16 H 0.119 0.881 17 C -0.325 4.325 18 C -0.163 4.163 19 C -0.167 4.167 20 C -0.367 4.367 21 S 0.383 5.617 22 N -0.220 5.220 23 C -0.114 4.114 24 C -0.011 4.011 25 O -0.306 6.306 26 C -0.011 4.011 27 C -0.118 4.118 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.176 0.824 43 H 0.124 0.876 44 H 0.056 0.944 45 H 0.085 0.915 46 H 0.115 0.885 47 H 0.110 0.890 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.471 -24.408 8.411 25.820 hybrid contribution -1.437 0.361 1.774 2.311 sum -0.966 -24.046 10.184 26.132 Atomic orbital electron populations 1.22401 0.87727 1.01476 1.00607 1.62000 1.07810 1.14328 1.40561 1.22329 0.99308 0.86349 0.99228 1.21623 1.00057 0.97985 0.94308 1.19072 0.96164 0.89442 0.96888 1.21255 1.34627 0.97553 1.02066 0.92688 1.25024 0.95258 0.97540 0.96700 1.69967 1.38412 1.11257 1.34043 0.86613 0.78047 0.79352 0.84109 1.20741 1.21271 1.19838 1.22251 1.00561 0.91365 0.92870 1.20476 0.99103 0.92597 0.82979 0.88080 1.25558 0.96657 1.07272 1.03036 1.20114 1.01178 1.00045 0.94931 1.20125 0.92776 1.02427 1.01420 1.26020 1.00455 1.07867 1.02346 1.84665 1.05903 1.50492 1.20594 1.62405 1.21020 1.10564 1.28038 1.23103 0.88021 1.03101 0.97128 1.22668 1.01815 0.80878 0.95695 1.87959 1.28020 1.22753 1.91905 1.22600 0.84016 0.99353 0.95098 1.22892 1.01964 0.88668 0.98237 0.96451 0.90622 0.91843 0.95507 0.91574 0.92562 0.93429 0.96962 0.96704 0.93079 0.94240 0.90682 0.84502 0.84702 0.82376 0.87558 0.94436 0.91507 0.88520 0.88951 0.92192 0.93463 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.12 60.06 0.55 0.89 16 2 N -0.52 -7.35 3.91 -242.92 -0.95 -8.30 16 3 C 0.05 0.93 4.96 -3.82 -0.02 0.91 16 4 C -0.10 -2.08 5.08 -26.73 -0.14 -2.22 16 5 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 6 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.06 0.71 3.64 -3.82 -0.01 0.69 16 15 C 0.16 1.68 2.23 -68.86 -0.15 1.53 16 16 H 0.10 1.03 6.77 -51.93 -0.35 0.68 16 17 C -0.21 -2.07 3.76 -36.00 -0.14 -2.20 16 18 C -0.13 -1.21 10.02 -41.21 -0.41 -1.62 16 19 C -0.14 -1.19 10.18 -41.21 -0.42 -1.61 16 20 C -0.23 -2.07 11.23 29.04 0.33 -1.75 16 21 S 0.12 1.20 18.82 -107.50 -2.02 -0.82 16 22 N -0.50 -5.51 4.55 -227.72 -1.04 -6.55 16 23 C 0.02 0.17 4.62 -3.71 -0.02 0.16 16 24 C 0.07 0.76 7.01 37.21 0.26 1.02 16 25 O -0.39 -4.69 10.82 -35.23 -0.38 -5.07 16 26 C 0.07 0.66 7.01 37.21 0.26 0.92 16 27 C 0.01 0.11 5.15 -3.71 -0.02 0.09 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 1.09 6.30 -51.93 -0.33 0.76 16 30 H 0.06 0.73 6.59 -51.93 -0.34 0.39 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.96 6.47 -51.93 -0.34 0.63 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.07 0.94 6.42 -51.93 -0.33 0.60 16 40 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.11 1.36 5.76 -51.93 -0.30 1.07 16 44 H 0.04 0.43 4.32 -30.65 -0.13 0.30 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.50 6.13 -51.93 -0.32 0.19 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -30.67 392.26 -11.56 -42.23 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -8.31 Total: -1.52 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -0.48 Total: -16.29 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -1.25 Total: -41.24 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.38 Total: -5.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.02 Total: -0.82 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.67 -11.56 -42.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603885.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.954 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds