Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 111.00060 * 2 1 4 4 C 1.53006 * 109.47243 * 293.95951 * 3 2 1 5 5 C 1.52995 * 109.47003 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47196 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99498 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00149 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00194 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99871 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46939 * 90.00558 * 10 8 6 12 12 H 1.48498 * 109.47570 * 210.00665 * 10 8 6 13 13 H 1.48501 * 109.47527 * 330.00581 * 10 8 6 14 14 C 1.46896 * 111.00467 * 123.95794 * 2 1 3 15 15 C 1.53004 * 109.47072 * 66.04314 * 14 2 1 16 16 H 1.09002 * 109.46753 * 294.65616 * 15 14 2 17 17 C 1.50707 * 109.46901 * 174.65984 * 15 14 2 18 18 C 1.33388 * 125.20102 * 109.27472 * 17 15 14 19 19 C 1.38426 * 114.91742 * 179.97438 * 18 17 15 20 20 C 1.33391 * 114.92202 * 0.02562 * 19 18 17 21 21 S 1.75879 * 125.20250 * 288.96634 * 17 15 14 22 22 N 1.46891 * 109.47173 * 54.65930 * 15 14 2 23 23 C 1.47010 * 111.00027 * 46.94723 * 22 15 14 24 24 C 1.53102 * 109.29480 * 182.37060 * 23 22 15 25 25 O 1.43020 * 109.25611 * 303.22167 * 24 23 22 26 26 C 1.43022 * 113.77783 * 58.59713 * 25 24 23 27 27 C 1.47013 * 111.00087 * 170.58167 * 22 15 14 28 28 H 1.09004 * 109.46803 * 296.04018 * 1 2 3 29 29 H 1.08997 * 109.47725 * 56.04238 * 1 2 3 30 30 H 1.09006 * 109.47380 * 176.04488 * 1 2 3 31 31 H 1.09002 * 109.47266 * 53.95848 * 3 2 1 32 32 H 1.09003 * 109.47415 * 173.95817 * 3 2 1 33 33 H 1.09005 * 109.46893 * 299.99588 * 4 3 2 34 34 H 1.08994 * 109.47235 * 59.99746 * 4 3 2 35 35 H 1.09002 * 109.47195 * 299.99707 * 5 4 3 36 36 H 1.09003 * 109.47725 * 59.99824 * 5 4 3 37 37 H 0.96998 * 120.00178 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47033 * 306.04499 * 14 2 1 39 39 H 1.08997 * 109.47475 * 186.04403 * 14 2 1 40 40 H 1.07994 * 122.54279 * 359.95217 * 18 17 15 41 41 H 1.07997 * 122.53707 * 180.02562 * 19 18 17 42 42 H 1.08001 * 125.20211 * 180.02562 * 20 19 18 43 43 H 1.09000 * 109.50719 * 302.32377 * 23 22 15 44 44 H 1.09002 * 109.50778 * 62.41454 * 23 22 15 45 45 H 1.09005 * 109.50672 * 63.10749 * 24 23 22 46 46 H 1.09000 * 109.50933 * 183.23604 * 24 23 22 47 47 H 1.09000 * 109.50507 * 181.42150 * 26 25 24 48 48 H 1.08999 * 109.53668 * 61.31156 * 26 25 24 49 49 H 1.08994 * 109.50690 * 297.54250 * 27 22 15 50 50 H 1.09005 * 109.50765 * 57.63105 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 6 1.8221 4.1612 -2.6171 7 1 1.2597 3.6253 -3.3674 8 6 2.2125 5.4633 -2.8474 9 7 2.8978 6.1157 -1.9339 10 14 1.7693 6.3005 -4.4574 11 1 0.4569 6.9810 -4.3165 12 1 2.8118 7.3014 -4.7983 13 1 1.6866 5.2845 -5.5373 14 6 1.9955 -0.7660 1.1375 15 6 1.6315 -2.2427 0.9702 16 1 0.5492 -2.3588 1.0274 17 6 2.2817 -3.0476 2.0659 18 6 1.6382 -3.6213 3.0838 19 6 2.4469 -4.3122 3.9698 20 6 3.7470 -4.2991 3.6716 21 16 4.0039 -3.3805 2.1940 22 7 2.1068 -2.7193 -0.3354 23 6 3.4957 -2.3012 -0.5752 24 6 3.9309 -2.7663 -1.9674 25 8 3.7670 -4.1838 -2.0637 26 6 2.4259 -4.6260 -1.8364 27 6 1.9767 -4.1797 -0.4425 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3634 -1.0253 -0.0709 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3444 0.1082 33 1 2.0657 1.5016 -2.1492 34 1 0.5471 2.0845 -1.4264 35 1 1.7463 4.0418 -0.4875 36 1 3.2645 3.4582 -1.2105 37 1 3.1728 7.0317 -2.0960 38 1 1.5612 -0.3873 2.0627 39 1 3.0798 -0.6612 1.1755 40 1 0.5677 -3.5518 3.2075 41 1 2.0548 -4.8232 4.8367 42 1 4.5225 -4.7830 4.2468 43 1 3.5641 -1.2149 -0.5165 44 1 4.1454 -2.7480 0.1775 45 1 3.3163 -2.2773 -2.7232 46 1 4.9780 -2.5086 -2.1264 47 1 2.3853 -5.7133 -1.9012 48 1 1.7666 -4.1916 -2.5878 49 1 2.6021 -4.6571 0.3117 50 1 0.9362 -4.4648 -0.2862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075603885.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = -15.383607 kcal Electronic energy + Delta-G solvation = -28110.807703 eV Core-core repulsion = 24457.242711 eV Total energy + Delta-G solvation = -3653.564992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.07118 -39.14653 -38.47875 -36.78852 -35.49573 -33.38872 -32.12650 -31.85037 -29.26350 -28.57179 -27.84039 -26.13104 -25.17836 -24.63331 -23.54555 -22.15765 -21.51376 -21.09519 -20.05379 -18.52338 -18.34330 -17.31659 -17.07392 -16.76358 -16.56189 -16.45545 -16.20748 -15.97707 -15.79044 -15.51698 -15.13835 -14.97905 -14.36262 -14.28158 -14.06931 -13.72873 -13.57753 -13.50293 -13.31207 -13.12267 -13.09040 -12.87579 -12.68287 -12.55195 -12.48305 -12.39535 -12.35599 -12.11250 -11.75919 -11.50437 -11.38598 -11.34436 -11.30266 -11.05513 -10.61643 -10.53165 -9.70885 -9.47572 -9.18774 -9.12316 -8.18660 -6.29217 0.04205 0.67185 1.08900 1.40669 1.41940 1.53309 1.82088 2.41980 2.73819 2.98485 3.04644 3.14577 3.69250 3.79617 4.00905 4.10924 4.15761 4.21174 4.23563 4.26421 4.32481 4.35117 4.42301 4.54168 4.58634 4.65760 4.67617 4.70927 4.72155 4.76714 4.79292 4.86061 4.90495 4.98678 5.01146 5.09263 5.13347 5.13955 5.18892 5.31121 5.35729 5.55282 5.56366 5.78027 5.88809 5.93642 6.02263 6.13745 6.23183 6.26011 6.30635 6.87935 7.39945 8.93274 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.002663 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.525950 B =10513.793184 C =11328.773028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.524 5.524 3 C 0.068 3.932 4 C -0.084 4.084 5 C 0.027 3.973 6 C -0.540 4.540 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.263 1.263 14 C 0.063 3.937 15 C 0.168 3.832 16 H 0.111 0.889 17 C -0.215 4.215 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.231 4.231 21 S 0.085 5.915 22 N -0.506 5.506 23 C 0.019 3.981 24 C 0.067 3.933 25 O -0.402 6.402 26 C 0.063 3.937 27 C 0.016 3.984 28 H 0.022 0.978 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.050 0.950 35 H -0.012 1.012 36 H -0.010 1.010 37 H 0.263 0.737 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.176 0.824 43 H 0.090 0.910 44 H 0.041 0.959 45 H 0.056 0.944 46 H 0.104 0.896 47 H 0.113 0.887 48 H 0.058 0.942 49 H 0.042 0.958 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -26.460 10.235 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.248 5.248 3 C -0.060 4.060 4 C -0.122 4.122 5 C -0.011 4.011 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.188 1.188 14 C -0.066 4.066 15 C 0.057 3.943 16 H 0.129 0.871 17 C -0.335 4.335 18 C -0.159 4.159 19 C -0.172 4.172 20 C -0.366 4.366 21 S 0.349 5.651 22 N -0.229 5.229 23 C -0.110 4.110 24 C -0.010 4.010 25 O -0.321 6.321 26 C -0.014 4.014 27 C -0.112 4.112 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.006 0.994 36 H 0.009 0.991 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.193 0.807 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.122 0.878 47 H 0.131 0.869 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.775 -26.085 8.575 27.469 hybrid contribution -1.051 0.823 1.802 2.242 sum -1.825 -25.262 10.377 27.371 Atomic orbital electron populations 1.22412 0.86829 1.02573 1.00188 1.61927 1.08582 1.12347 1.41898 1.22020 0.99218 0.87904 0.96824 1.21340 0.99713 0.94952 0.96211 1.18965 0.94583 0.92349 0.95192 1.21691 1.34771 0.98257 1.03066 0.92327 1.25970 0.94986 0.98333 1.00564 1.70098 1.39409 1.11733 1.36245 0.85473 0.78019 0.78259 0.79468 1.19756 1.20743 1.18762 1.22233 1.00064 0.92274 0.91991 1.20349 0.99525 0.91284 0.83117 0.87141 1.25440 0.96331 1.08201 1.03505 1.20401 1.02164 0.99091 0.94280 1.20417 0.92584 1.02215 1.01954 1.26264 1.01255 1.07437 1.01620 1.84768 1.06774 1.51461 1.22086 1.62425 1.20547 1.11469 1.28431 1.22984 0.88697 1.02039 0.97254 1.22655 1.02113 0.80824 0.95390 1.87938 1.29384 1.22760 1.92014 1.22772 0.83014 1.00535 0.95067 1.22881 1.02657 0.87731 0.97929 0.95960 0.92064 0.89780 0.96069 0.91890 0.93012 0.93155 0.99382 0.99111 0.92823 0.94002 0.91421 0.82791 0.82487 0.80659 0.89194 0.94152 0.92573 0.87814 0.86946 0.92394 0.94028 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.12 127.69 1.17 1.86 16 2 N -0.52 -14.43 3.91 -922.45 -3.61 -18.04 16 3 C 0.07 2.33 4.96 86.31 0.43 2.76 16 4 C -0.08 -3.51 5.08 30.59 0.16 -3.35 16 5 C 0.03 1.43 4.97 29.85 0.15 1.58 16 6 C -0.54 -31.21 9.11 25.60 0.23 -30.97 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 9 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 10 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 14 C 0.06 1.47 3.64 86.31 0.31 1.78 16 15 C 0.17 3.28 2.23 44.17 0.10 3.38 16 16 H 0.11 1.96 6.77 -2.39 -0.02 1.94 16 17 C -0.22 -3.97 3.76 24.59 0.09 -3.88 16 18 C -0.13 -2.03 10.02 21.22 0.21 -1.82 16 19 C -0.14 -2.09 10.18 21.22 0.22 -1.87 16 20 C -0.23 -3.68 11.23 66.72 0.75 -2.93 16 21 S 0.09 1.65 18.82 -56.49 -1.06 0.58 16 22 N -0.51 -10.63 4.55 -874.37 -3.98 -14.61 16 23 C 0.02 0.44 4.62 86.32 0.40 0.84 16 24 C 0.07 1.54 7.01 72.02 0.51 2.05 16 25 O -0.40 -9.47 10.82 -148.98 -1.61 -11.08 16 26 C 0.06 1.16 7.01 72.01 0.50 1.66 16 27 C 0.02 0.29 5.15 86.31 0.44 0.74 16 28 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 1.70 6.30 -2.39 -0.02 1.69 16 30 H 0.08 1.74 6.59 -2.38 -0.02 1.73 16 31 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 32 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 33 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.05 2.05 6.47 -2.39 -0.02 2.04 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 39 H 0.07 1.69 6.42 -2.39 -0.02 1.68 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.09 2.36 5.76 -2.39 -0.01 2.34 16 44 H 0.04 0.93 4.32 -15.92 -0.07 0.86 16 45 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.04 0.82 6.13 -2.39 -0.01 0.81 16 50 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -66.02 392.26 -0.98 -67.00 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.85 Total: 14.38 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 6.13 Total: -27.79 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -7.30 Total: -89.90 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.61 Total: -11.08 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.06 Total: 0.58 kcal Total: -66.02 -0.98 -67.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603885.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.612 kcal (2) G-P(sol) polarization free energy of solvation -66.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds