Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21289 * 120.00038 * 2 1 4 4 N 1.34777 * 120.00310 * 180.02562 * 2 1 3 5 5 C 1.47078 * 120.87903 * 4.40970 * 4 2 1 6 6 C 1.53238 * 108.52288 * 231.20498 * 5 4 2 7 7 N 1.46898 * 109.34292 * 306.17549 * 6 5 4 8 8 C 1.46891 * 111.00406 * 187.25246 * 7 6 5 9 9 H 1.08999 * 110.28824 * 278.43604 * 8 7 6 10 10 C 1.54388 * 110.32322 * 40.66172 * 8 7 6 11 11 N 1.48562 * 104.59188 * 142.74852 * 10 8 7 12 12 C 1.46900 * 111.00113 * 200.96026 * 11 10 8 13 13 C 1.50696 * 109.47282 * 185.29644 * 12 11 10 14 14 O 1.21302 * 120.00097 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00372 * 179.97438 * 13 12 11 16 16 C 1.37089 * 120.00232 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00605 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99734 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00254 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99867 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47063 * 89.99897 * 20 18 16 22 22 H 1.48497 * 109.47003 * 210.00225 * 20 18 16 23 23 H 1.48497 * 109.46844 * 330.00352 * 20 18 16 24 24 C 1.48557 * 104.22579 * 320.52450 * 11 10 8 25 25 C 1.54259 * 110.32708 * 156.30291 * 8 7 6 26 26 H 1.08999 * 110.32457 * 122.20736 * 25 8 7 27 27 C 1.52998 * 110.32151 * 359.97438 * 25 8 7 28 28 C 1.46895 * 111.26890 * 63.09814 * 7 6 5 29 29 C 1.47076 * 120.88292 * 184.42981 * 4 2 1 30 30 H 1.09003 * 109.46892 * 263.44708 * 1 2 3 31 31 H 1.09001 * 109.47093 * 23.44400 * 1 2 3 32 32 H 1.08998 * 109.47319 * 143.44971 * 1 2 3 33 33 H 1.09003 * 109.62522 * 111.49524 * 5 4 2 34 34 H 1.09000 * 109.63246 * 350.91843 * 5 4 2 35 35 H 1.09000 * 109.49432 * 186.20941 * 6 5 4 36 36 H 1.09007 * 109.48969 * 66.13302 * 6 5 4 37 37 H 1.09001 * 110.41030 * 23.97606 * 10 8 7 38 38 H 1.09000 * 110.41620 * 261.52787 * 10 8 7 39 39 H 1.08997 * 109.47136 * 305.29799 * 12 11 10 40 40 H 1.08994 * 109.46749 * 65.29555 * 12 11 10 41 41 H 0.97004 * 119.99467 * 0.02562 * 15 13 12 42 42 H 0.96994 * 119.99963 * 179.97438 * 19 18 16 43 43 H 1.08999 * 110.41138 * 158.26361 * 24 11 10 44 44 H 1.09007 * 110.41010 * 280.70215 * 24 11 10 45 45 H 1.08999 * 109.47234 * 314.33628 * 27 25 8 46 46 H 1.08994 * 109.47035 * 74.34461 * 27 25 8 47 47 H 1.09000 * 109.46586 * 194.34145 * 27 25 8 48 48 H 1.08994 * 109.49461 * 56.86347 * 28 7 6 49 49 H 1.09003 * 109.49012 * 176.94261 * 28 7 6 50 50 H 1.08995 * 109.63402 * 248.50149 * 29 4 2 51 51 H 1.08996 * 109.62993 * 9.08880 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4685 -2.4502 -0.0982 6 6 1.9514 -3.3626 1.0343 7 7 3.4164 -3.4605 0.9891 8 6 3.9071 -4.4592 1.9480 9 1 3.9623 -4.0282 2.9476 10 6 2.9888 -5.7003 1.9469 11 7 3.9134 -6.8502 2.1190 12 6 3.2939 -8.0982 1.6534 13 6 4.2059 -9.2574 1.9620 14 8 5.2675 -9.0633 2.5159 15 7 3.8417 -10.5102 1.6236 16 6 4.6716 -11.5647 1.9038 17 1 5.6171 -11.3918 2.3962 18 6 4.2963 -12.8561 1.5544 19 7 3.1460 -13.0666 0.9548 20 14 5.4269 -14.2932 1.9370 21 1 5.1060 -14.8306 3.2836 22 1 5.2349 -15.3584 0.9202 23 1 6.8385 -13.8329 1.9112 24 6 5.0926 -6.4983 1.2868 25 6 5.2911 -4.9843 1.5137 26 1 6.0252 -4.8125 2.3009 27 6 5.7332 -4.3062 0.2154 28 6 4.0453 -2.1536 1.2219 29 6 3.6482 -1.1917 0.0970 30 1 -0.3633 -0.1173 1.0210 31 1 -0.3633 0.9428 -0.4089 32 1 -0.3634 -0.8255 -0.6120 33 1 1.6829 -2.9157 -1.0601 34 1 0.3960 -2.2818 -0.0007 35 1 1.5165 -4.3546 0.9127 36 1 1.6442 -2.9455 1.9935 37 1 2.4569 -5.7788 0.9986 38 1 2.2834 -5.6521 2.7765 39 1 2.3398 -8.2415 2.1605 40 1 3.1286 -8.0423 0.5775 41 1 2.9926 -10.6655 1.1810 42 1 2.8842 -13.9680 0.7106 43 1 5.9712 -7.0511 1.6193 44 1 4.8900 -6.7017 0.2352 45 1 4.9037 -4.2996 -0.4918 46 1 6.0389 -3.2816 0.4265 47 1 6.5719 -4.8546 -0.2135 48 1 3.7091 -1.7534 2.1783 49 1 5.1291 -2.2689 1.2362 50 1 4.0722 -1.5363 -0.8461 51 1 4.0169 -0.1913 0.3236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076055919.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = -33.109312 kcal Electronic energy + Delta-G solvation = -30368.126975 eV Core-core repulsion = 26303.333218 eV Total energy + Delta-G solvation = -4064.793757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.76105 -39.64611 -38.23120 -37.11067 -34.79633 -33.83896 -32.76960 -32.07688 -31.19678 -29.94955 -29.34816 -27.41253 -26.22882 -25.19260 -24.21894 -23.66866 -21.88940 -20.86980 -19.76947 -19.21340 -19.02788 -17.86267 -17.45997 -16.42347 -16.27381 -16.01780 -15.82180 -15.57068 -15.35503 -14.97786 -14.59850 -14.44670 -14.16390 -13.93670 -13.72317 -13.54986 -13.34895 -13.09495 -12.89339 -12.72509 -12.47405 -12.29457 -12.23463 -12.04319 -11.87937 -11.78210 -11.55763 -11.47410 -11.33654 -11.10093 -10.96342 -10.82949 -10.53600 -10.42253 -10.38977 -10.21352 -10.12734 -9.48602 -9.12347 -8.52655 -8.49111 -8.01430 -7.93290 -6.41243 -3.81787 2.25644 2.59454 3.17984 3.26474 3.32188 3.44742 3.91713 4.08616 4.16626 4.30762 4.42160 4.47927 4.62597 4.67992 4.72290 4.85266 4.86290 4.91439 5.00131 5.03234 5.10446 5.19283 5.22647 5.25729 5.33161 5.37316 5.43567 5.48545 5.53792 5.59537 5.65011 5.67881 5.74672 5.83645 5.85878 5.97252 6.04846 6.06794 6.20643 6.27920 6.43598 6.53670 6.73422 6.74481 7.03493 7.15965 7.22622 7.55717 7.79150 8.06945 8.62754 9.19022 9.55341 10.07485 10.76632 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.002063 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.368284 B =13571.584139 C =14172.129132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.512 3.488 3 O -0.551 6.551 4 N -0.615 5.615 5 C 0.110 3.890 6 C 0.030 3.970 7 N -0.525 5.525 8 C 0.084 3.916 9 H 0.055 0.945 10 C 0.032 3.968 11 N -0.485 5.485 12 C 0.036 3.964 13 C 0.445 3.555 14 O -0.577 6.577 15 N -0.566 5.566 16 C -0.297 4.297 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.903 5.903 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.047 3.953 25 C -0.087 4.087 26 H 0.075 0.925 27 C -0.135 4.135 28 C 0.035 3.965 29 C 0.117 3.883 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.036 0.964 49 H 0.098 0.902 50 H 0.075 0.925 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 22.329 -3.714 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.301 3.699 3 O -0.429 6.429 4 N -0.349 5.349 5 C -0.013 4.013 6 C -0.098 4.098 7 N -0.250 5.250 8 C -0.024 4.024 9 H 0.073 0.927 10 C -0.097 4.097 11 N -0.209 5.209 12 C -0.095 4.095 13 C 0.231 3.769 14 O -0.461 6.461 15 N -0.203 5.203 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.081 4.081 25 C -0.106 4.106 26 H 0.094 0.906 27 C -0.193 4.193 28 C -0.093 4.093 29 C -0.006 4.006 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.116 0.884 50 H 0.094 0.906 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.663 22.581 -3.308 23.514 hybrid contribution -0.657 -0.773 -0.083 1.018 sum -6.319 21.807 -3.391 22.956 Atomic orbital electron populations 1.21960 0.91820 1.05079 1.04627 1.20833 0.90670 0.82980 0.75392 1.90715 1.70781 1.31090 1.50275 1.48247 1.07511 1.06166 1.72988 1.21953 0.96646 0.82970 0.99720 1.22635 0.89043 1.00714 0.97421 1.62092 1.05034 1.06785 1.51047 1.22382 0.95461 0.91309 0.93243 0.92729 1.23333 0.95436 0.90385 1.00499 1.65113 1.05017 1.00074 1.50662 1.22035 0.98233 0.90699 0.98581 1.19694 0.88453 0.83697 0.85088 1.90508 1.24909 1.84429 1.46256 1.41855 1.20455 1.04932 1.53021 1.19687 1.02041 0.84704 1.36241 0.87947 1.25257 0.96919 0.98848 0.96996 1.69608 1.21050 1.22748 1.41030 0.85863 0.80218 0.80229 0.78014 1.20425 1.20967 1.19442 1.23206 0.95864 0.94021 0.95028 1.21929 0.95243 0.95080 0.98384 0.90647 1.21831 1.01151 0.99091 0.97206 1.22718 1.01015 0.88681 0.96904 1.21691 0.79501 1.00277 0.99109 0.88902 0.88958 0.89737 0.90265 0.89092 0.88543 0.94269 0.92779 0.90469 0.89441 0.93226 0.77541 0.91918 0.88480 0.94155 0.90829 0.92992 0.93470 0.94542 0.88370 0.90641 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 9.34 36.00 0.34 -0.58 16 2 C 0.51 4.77 7.81 -10.99 -0.09 4.69 16 3 O -0.55 -7.48 16.57 5.55 0.09 -7.39 16 4 N -0.61 -4.96 3.01 -172.46 -0.52 -5.48 16 5 C 0.11 0.65 6.41 -3.60 -0.02 0.63 16 6 C 0.03 0.22 5.15 -3.70 -0.02 0.20 16 7 N -0.52 -4.50 2.88 -224.69 -0.65 -5.15 16 8 C 0.08 0.90 2.91 -66.33 -0.19 0.70 16 9 H 0.05 0.61 8.01 -51.93 -0.42 0.19 16 10 C 0.03 0.38 4.78 -2.18 -0.01 0.37 16 11 N -0.48 -7.86 5.06 -231.41 -1.17 -9.03 16 12 C 0.04 0.64 5.30 -4.98 -0.03 0.61 16 13 C 0.45 10.43 7.58 -10.99 -0.08 10.35 16 14 O -0.58 -15.50 14.42 5.54 0.08 -15.42 16 15 N -0.57 -14.24 5.29 -10.96 -0.06 -14.29 16 16 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 20 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.05 0.73 5.34 -2.18 -0.01 0.72 16 25 C -0.09 -1.04 3.53 -89.24 -0.32 -1.35 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 C -0.14 -1.38 7.87 37.16 0.29 -1.08 16 28 C 0.04 0.29 4.91 -3.70 -0.02 0.27 16 29 C 0.12 0.98 6.58 -3.60 -0.02 0.95 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.27 6.44 -51.93 -0.33 -0.07 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.33 5.64 -51.93 -0.29 0.03 16 35 H 0.10 0.65 5.61 -51.93 -0.29 0.36 16 36 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.05 0.59 6.32 -51.93 -0.33 0.26 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 40 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 41 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 44 H 0.04 0.63 7.54 -51.93 -0.39 0.24 16 45 H 0.07 0.78 7.13 -51.93 -0.37 0.41 16 46 H 0.05 0.45 5.61 -51.93 -0.29 0.16 16 47 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.10 0.77 5.23 -51.93 -0.27 0.50 16 50 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.09 0.88 7.09 -51.93 -0.37 0.51 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -33.43 388.01 -9.28 -42.71 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.18 Total: 7.38 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.42 Total: 8.54 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -1.67 Total: -57.66 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.17 Total: -22.80 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.43 -9.28 -42.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076055919.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.603 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds