Wall clock time and date at job start Tue Mar 31 2020 07:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47029 * 180.02562 * 9 7 2 11 11 C 1.39677 * 119.99932 * 85.00248 * 10 9 7 12 12 C 1.38912 * 120.06999 * 204.72471 * 11 10 9 13 13 C 1.38113 * 119.91943 * 179.76930 * 12 11 10 14 14 C 1.38285 * 120.07243 * 0.50319 * 13 12 11 15 15 C 1.38283 * 120.15170 * 359.74633 * 14 13 12 16 16 C 1.38104 * 120.07801 * 359.97438 * 15 14 13 17 17 S 1.65594 * 120.00116 * 264.99937 * 10 9 7 18 18 O 1.42097 * 104.28042 * 206.07279 * 17 10 9 19 19 O 1.42107 * 104.27769 * 333.93349 * 17 10 9 20 20 C 1.81402 * 104.45053 * 89.99893 * 17 10 9 21 21 C 1.53002 * 109.47459 * 180.02562 * 20 17 10 22 22 H 1.09005 * 109.47559 * 305.02620 * 21 20 17 23 23 C 1.53089 * 109.48202 * 185.00483 * 21 20 17 24 24 C 1.53173 * 109.16209 * 182.40688 * 23 21 20 25 25 C 1.53178 * 109.03706 * 56.98051 * 24 23 21 26 26 C 1.53099 * 109.15984 * 303.01600 * 25 24 23 27 27 O 1.42898 * 109.48092 * 65.05380 * 21 20 17 28 28 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 30 30 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 31 31 H 1.07992 * 120.04275 * 359.97438 * 12 11 10 32 32 H 1.07994 * 119.96045 * 180.25073 * 13 12 11 33 33 H 1.08001 * 119.92039 * 179.72144 * 14 13 12 34 34 H 1.08008 * 119.95880 * 180.02562 * 15 14 13 35 35 H 1.07995 * 120.03609 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.47341 * 300.00647 * 20 17 10 37 37 H 1.09006 * 109.46811 * 60.00316 * 20 17 10 38 38 H 1.08998 * 109.52271 * 302.30974 * 23 21 20 39 39 H 1.08997 * 109.52680 * 62.49893 * 23 21 20 40 40 H 1.09004 * 109.54222 * 176.84621 * 24 23 21 41 41 H 1.08999 * 109.54822 * 297.02100 * 24 23 21 42 42 H 1.08993 * 109.52773 * 62.92333 * 25 24 23 43 43 H 1.09000 * 109.52176 * 183.05405 * 25 24 23 44 44 H 1.08997 * 109.47742 * 177.59258 * 26 25 24 45 45 H 1.08999 * 109.47879 * 297.61380 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.7371 -4.0750 1.2045 12 6 3.9623 -4.7295 1.2173 13 6 4.4896 -5.1811 2.4113 14 6 3.7945 -4.9916 3.5916 15 6 2.5721 -4.3450 3.5816 16 6 2.0417 -3.8858 2.3921 17 16 2.6462 -4.3232 -1.4291 18 8 3.0189 -5.6446 -1.0626 19 8 1.5446 -4.0862 -2.2950 20 6 4.0974 -3.3802 -1.9728 21 6 4.6063 -3.9471 -3.2997 22 1 4.7976 -5.0145 -3.1894 23 6 5.9020 -3.2344 -3.6960 24 6 6.3725 -3.7648 -5.0537 25 6 5.2576 -3.5594 -6.0839 26 6 3.9868 -4.2596 -5.5954 27 8 3.6215 -3.7417 -4.3146 28 1 -0.4849 -0.8401 0.0004 29 1 0.6248 -2.5571 0.8897 30 1 0.6241 -2.5567 -0.8903 31 1 4.5034 -4.8821 0.2953 32 1 5.4440 -5.6865 2.4225 33 1 4.2070 -5.3498 4.5232 34 1 2.0320 -4.1983 4.5054 35 1 1.0873 -3.3805 2.3851 36 1 3.8217 -2.3342 -2.1068 37 1 4.8824 -3.4555 -1.2203 38 1 5.7208 -2.1620 -3.7668 39 1 6.6678 -3.4266 -2.9446 40 1 7.2639 -3.2220 -5.3682 41 1 6.6027 -4.8269 -4.9705 42 1 5.0634 -2.4936 -6.2030 43 1 5.5631 -3.9831 -7.0406 44 1 3.1781 -4.0809 -6.3039 45 1 4.1700 -5.3312 -5.5156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076937440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:23 Heat of formation + Delta-G solvation = -96.341787 kcal Electronic energy + Delta-G solvation = -28779.810835 eV Core-core repulsion = 24889.183476 eV Total energy + Delta-G solvation = -3890.627359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.55298 -39.13813 -36.75576 -35.69807 -35.41157 -33.80017 -33.06071 -32.87474 -30.60068 -29.19406 -28.20018 -26.39990 -24.49084 -23.38465 -22.77400 -22.13574 -21.24935 -20.46283 -18.73589 -17.58882 -17.20544 -16.75969 -16.41875 -16.32268 -15.96642 -15.28217 -14.82088 -14.68683 -14.63997 -14.22631 -13.86855 -13.79160 -13.54278 -13.17946 -13.10446 -12.87829 -12.68256 -12.54302 -12.40792 -12.13879 -11.72947 -11.57851 -11.52983 -11.33071 -11.27084 -11.12631 -11.03864 -10.94752 -10.80360 -10.65481 -10.56057 -10.36300 -10.20224 -10.00069 -9.51191 -8.81681 -8.55521 -8.51494 -7.44239 -6.52549 -4.28897 0.62016 1.77785 1.85724 3.00865 3.35377 3.37728 3.51899 3.53558 4.05114 4.26142 4.41266 4.47681 4.59909 4.63245 4.67522 4.78206 4.92354 4.94200 5.07965 5.22401 5.23321 5.25288 5.30651 5.39444 5.41597 5.54758 5.61865 5.65764 5.72486 5.73718 5.83835 5.85926 5.96162 5.99488 6.12716 6.20688 6.41225 6.62982 6.82832 6.88140 6.96402 7.06278 7.12528 7.13175 7.59169 7.79724 8.25152 8.63724 9.42458 10.84831 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008792 B = 0.005452 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.929128 B = 5134.031361 C = 6983.256789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 1.070 2.930 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.625 4.625 8 H 0.058 0.942 9 C 0.222 3.778 10 N -0.924 5.924 11 C 0.205 3.795 12 C -0.174 4.174 13 C -0.088 4.088 14 C -0.162 4.162 15 C -0.092 4.092 16 C -0.141 4.141 17 S 2.610 3.390 18 O -0.963 6.963 19 O -0.930 6.930 20 C -0.628 4.628 21 C 0.102 3.898 22 H 0.069 0.931 23 C -0.142 4.142 24 C -0.124 4.124 25 C -0.158 4.158 26 C 0.057 3.943 27 O -0.370 6.370 28 H 0.271 0.729 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.540 -8.636 -4.121 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.179 4.179 3 Si 0.898 3.102 4 H -0.212 1.212 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.664 4.664 8 H 0.076 0.924 9 C 0.101 3.899 10 N -0.747 5.747 11 C 0.107 3.893 12 C -0.196 4.196 13 C -0.107 4.107 14 C -0.182 4.182 15 C -0.111 4.111 16 C -0.163 4.163 17 S 2.704 3.296 18 O -0.954 6.954 19 O -0.921 6.921 20 C -0.755 4.755 21 C 0.043 3.957 22 H 0.086 0.914 23 C -0.181 4.181 24 C -0.162 4.162 25 C -0.196 4.196 26 C -0.019 4.019 27 O -0.289 6.289 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.643 -7.566 -4.612 14.631 hybrid contribution 0.980 -1.070 0.089 1.453 sum 12.623 -8.635 -4.522 15.949 Atomic orbital electron populations 1.70763 1.06832 1.30861 1.45060 1.25783 0.96379 1.02536 0.93190 0.83521 0.74702 0.75025 0.76955 1.21226 1.20710 1.21375 1.22278 0.94848 0.91461 1.57790 0.92404 1.19621 0.88233 0.82677 0.99406 1.55606 1.54460 1.46502 1.18115 1.17531 0.91492 0.93629 0.86619 1.20916 0.94905 1.04615 0.99138 1.20747 0.99268 0.98817 0.91843 1.20923 0.96391 1.03133 0.97741 1.20940 0.95679 0.97229 0.97238 1.20976 1.01016 1.03071 0.91266 1.05054 0.76637 0.74491 0.73403 1.93580 1.85155 1.34451 1.82202 1.93593 1.47891 1.85683 1.64910 1.30747 1.22082 1.18315 1.04399 1.21627 0.89594 0.98363 0.86153 0.91367 1.22155 0.96557 1.01813 0.97574 1.21625 0.98326 1.01424 0.94789 1.22220 0.95924 1.02480 0.98966 1.22654 0.97453 0.96867 0.84945 1.88128 1.41433 1.80928 1.18423 0.91824 0.94306 0.92855 0.86458 0.86192 0.86573 0.86175 0.85163 0.82562 0.84102 0.90124 0.90432 0.91141 0.91699 0.90645 0.90757 0.88169 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.65 55.43 0.76 -25.37 16 2 C 0.03 0.75 5.46 -17.82 -0.10 0.65 16 3 Si 1.07 24.23 29.90 -169.99 -5.08 19.15 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.62 -16.45 9.36 -34.44 -0.32 -16.78 16 8 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 9 C 0.22 5.49 4.47 -5.19 -0.02 5.47 16 10 N -0.92 -20.04 2.91 -59.80 -0.17 -20.22 16 11 C 0.21 4.14 6.05 -83.78 -0.51 3.63 16 12 C -0.17 -3.08 8.42 -39.38 -0.33 -3.41 16 13 C -0.09 -1.33 10.04 -39.61 -0.40 -1.72 16 14 C -0.16 -2.34 10.04 -39.55 -0.40 -2.73 16 15 C -0.09 -1.45 10.04 -39.61 -0.40 -1.85 16 16 C -0.14 -2.69 9.36 -39.38 -0.37 -3.05 16 17 S 2.61 52.89 4.65 -107.50 -0.50 52.39 16 18 O -0.96 -19.76 15.15 -57.54 -0.87 -20.63 16 19 O -0.93 -21.98 16.06 -59.89 -0.96 -22.94 16 20 C -0.63 -10.28 5.74 37.16 0.21 -10.06 16 21 C 0.10 1.47 2.64 -26.68 -0.07 1.40 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.14 -1.63 5.42 -26.60 -0.14 -1.78 16 24 C -0.12 -1.16 6.03 -26.55 -0.16 -1.32 16 25 C -0.16 -1.53 6.14 -26.59 -0.16 -1.69 16 26 C 0.06 0.68 6.84 37.21 0.25 0.94 16 27 O -0.37 -6.02 9.74 -36.17 -0.35 -6.37 16 28 H 0.27 7.82 7.22 -40.82 -0.29 7.53 16 29 H 0.04 0.97 5.90 -51.93 -0.31 0.66 16 30 H 0.05 1.42 6.68 -51.93 -0.35 1.07 16 31 H 0.12 1.91 5.13 -52.49 -0.27 1.64 16 32 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 35 H 0.13 2.54 6.20 -52.49 -0.33 2.22 16 36 H 0.16 2.76 8.14 -51.92 -0.42 2.33 16 37 H 0.14 1.91 7.20 -51.92 -0.37 1.53 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -33.23 371.15 -11.12 -44.35 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.62 Total: 6.35 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: -2.91 Total: -32.31 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.58 Total: -45.59 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -2.19 Total: -49.94 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.08 Total: 19.15 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.50 Total: 52.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.23 -11.12 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076937440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.993 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds