Wall clock time and date at job start Tue Mar 31 2020 07:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35738 * 116.99722 * 2 1 4 4 C 1.39027 * 119.88260 * 179.97438 * 3 2 1 5 5 C 1.37663 * 120.11118 * 179.97438 * 4 3 2 6 6 C 1.39976 * 119.88514 * 359.97438 * 5 4 3 7 7 C 1.46997 * 120.11145 * 179.97438 * 6 5 4 8 8 C 1.34996 * 119.99783 * 134.56784 * 7 6 5 9 9 C 1.46218 * 120.00245 * 347.91798 * 8 7 6 10 10 O 1.21739 * 119.99783 * 352.86644 * 9 8 7 11 11 N 1.34771 * 120.00170 * 172.86651 * 9 8 7 12 12 C 1.39820 * 120.00022 * 173.53794 * 11 9 8 13 13 C 1.38993 * 120.04214 * 152.08295 * 12 11 9 14 14 C 1.38148 * 120.06611 * 179.97438 * 13 12 11 15 15 C 1.38175 * 120.13834 * 359.74511 * 14 13 12 16 16 C 1.38908 * 120.07874 * 0.50592 * 15 14 13 17 17 O 1.35749 * 120.03398 * 179.77151 * 16 15 14 18 18 C 1.34831 * 116.99919 * 353.98269 * 17 16 15 19 19 H 1.08003 * 120.00239 * 5.05039 * 18 17 16 20 20 C 1.38659 * 120.00175 * 185.05098 * 18 17 16 21 21 N 1.31559 * 119.99779 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99764 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.46990 * 89.99937 * 22 20 18 24 24 H 1.48499 * 109.46930 * 210.00047 * 22 20 18 25 25 H 1.48497 * 109.47201 * 329.99970 * 22 20 18 26 26 C 1.38747 * 120.03847 * 332.05703 * 12 11 9 27 27 C 1.39979 * 119.77582 * 0.25862 * 6 5 4 28 28 C 1.37663 * 119.87964 * 359.48431 * 27 6 5 29 29 H 1.08997 * 109.46972 * 60.00175 * 1 2 3 30 30 H 1.09001 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47421 * 300.00165 * 1 2 3 32 32 H 1.07996 * 119.94200 * 359.95630 * 4 3 2 33 33 H 1.07996 * 120.05264 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.00118 * 314.57041 * 7 6 5 35 35 H 1.07997 * 120.00224 * 167.91919 * 8 7 6 36 36 H 0.96996 * 120.00537 * 353.53463 * 11 9 8 37 37 H 1.07999 * 119.96492 * 359.97438 * 13 12 11 38 38 H 1.07997 * 119.92694 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.95966 * 180.25726 * 15 14 13 40 40 H 0.97004 * 119.99504 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.06424 * 0.04586 * 26 12 11 42 42 H 1.07996 * 120.05635 * 179.72891 * 27 6 5 43 43 H 1.07998 * 119.93883 * 180.23470 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4337 1.2794 0.0005 5 6 4.0635 2.5036 0.0000 6 6 3.3034 3.6790 -0.0016 7 6 3.9708 4.9887 -0.0016 8 6 3.5472 5.9620 -0.8356 9 6 2.6128 5.6449 -1.9147 10 8 2.3177 4.4861 -2.1433 11 7 2.0784 6.6352 -2.6562 12 6 1.2930 6.3278 -3.7714 13 6 0.3001 7.2073 -4.1870 14 6 -0.4759 6.9042 -5.2891 15 6 -0.2643 5.7292 -5.9846 16 6 0.7228 4.8436 -5.5713 17 8 0.9268 3.6873 -6.2525 18 6 0.0584 3.3990 -7.2428 19 1 -0.7044 4.1127 -7.5171 20 6 0.1445 2.1861 -7.9093 21 7 -0.7025 1.9050 -8.8759 22 14 1.4633 0.9512 -7.4345 23 1 0.9397 0.0500 -6.3768 24 1 1.8421 0.1491 -8.6254 25 1 2.6564 1.6729 -6.9239 26 6 1.5041 5.1447 -4.4647 27 6 1.9057 3.6030 0.0028 28 6 1.2857 2.3738 -0.0021 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0192 0.3719 0.0017 33 1 5.1422 2.5568 0.0000 34 1 4.8000 5.1723 0.6655 35 1 3.8984 6.9750 -0.7059 36 1 2.2385 7.5613 -2.4163 37 1 0.1351 8.1284 -3.6478 38 1 -1.2464 7.5894 -5.6103 39 1 -0.8699 5.4972 -6.8482 40 1 -0.6419 1.0567 -9.3423 41 1 2.2747 4.4595 -4.1436 42 1 1.3149 4.5069 0.0060 43 1 0.2074 2.3141 -0.0025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077816207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:14 Heat of formation + Delta-G solvation = -7.748762 kcal Electronic energy + Delta-G solvation = -28440.472700 eV Core-core repulsion = 24418.243072 eV Total energy + Delta-G solvation = -4022.229629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.51031 -39.87030 -38.81702 -37.57779 -36.53713 -34.12406 -33.54567 -32.33786 -31.05591 -29.89348 -29.36257 -28.44298 -27.15138 -25.22356 -24.20487 -22.74085 -22.12176 -21.56198 -20.81885 -19.42290 -18.22458 -18.02610 -17.60856 -17.13537 -16.17947 -15.73325 -15.70061 -15.26212 -15.16199 -14.81849 -14.54717 -14.25893 -14.13420 -13.76632 -13.66560 -13.53518 -13.35506 -13.28007 -12.68704 -12.57776 -12.31139 -12.25628 -12.03255 -11.71670 -11.66196 -11.26150 -11.11551 -10.94898 -10.83789 -10.78926 -10.19304 -9.87089 -9.72637 -9.63314 -9.26392 -8.82789 -8.82478 -7.75831 -7.70727 -7.26258 -6.37975 -4.04234 0.67175 1.48178 1.78928 2.13455 2.26353 3.25260 3.26961 3.28109 3.32612 3.39332 3.48287 3.85937 4.29564 4.54058 4.63431 4.67918 4.82085 4.89668 5.00754 5.06257 5.14503 5.16158 5.18865 5.31136 5.42544 5.49405 5.57591 5.69098 5.73734 5.85079 5.94110 6.08474 6.10124 6.15016 6.30454 6.33669 6.43249 6.53492 6.60288 6.76337 6.84404 6.96506 7.14594 7.36034 7.40075 7.61909 7.69190 7.84478 8.06962 8.35491 8.97959 9.61818 10.69486 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008217 B = 0.004270 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.642620 B = 6555.822193 C = 8814.110482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.140 3.860 4 C -0.165 4.165 5 C -0.059 4.059 6 C -0.114 4.114 7 C -0.009 4.009 8 C -0.220 4.220 9 C 0.530 3.470 10 O -0.497 6.497 11 N -0.665 5.665 12 C 0.179 3.821 13 C -0.232 4.232 14 C -0.059 4.059 15 C -0.236 4.236 16 C 0.175 3.825 17 O -0.214 6.214 18 C -0.388 4.388 19 H 0.107 0.893 20 C 0.065 3.935 21 N -0.880 5.880 22 Si 0.902 3.098 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.193 4.193 27 C -0.003 4.003 28 C -0.211 4.211 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.405 0.595 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.279 0.721 41 H 0.135 0.865 42 H 0.115 0.885 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.842 6.708 20.951 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.095 3.905 4 C -0.183 4.183 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.029 4.029 8 C -0.241 4.241 9 C 0.320 3.680 10 O -0.373 6.373 11 N -0.309 5.309 12 C 0.085 3.915 13 C -0.254 4.254 14 C -0.077 4.077 15 C -0.255 4.255 16 C 0.122 3.878 17 O -0.119 6.119 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.138 4.138 21 N -0.518 5.518 22 Si 0.728 3.272 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.214 4.214 27 C -0.022 4.022 28 C -0.230 4.230 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.240 0.760 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.153 0.847 42 H 0.133 0.867 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.852 5.319 20.653 22.400 hybrid contribution 0.107 0.247 -0.080 0.281 sum 6.959 5.565 20.573 22.420 Atomic orbital electron populations 1.23080 0.78242 1.03903 1.01653 1.86002 1.21580 1.27248 1.88364 1.19191 0.92362 0.84029 0.94952 1.20195 0.91217 0.98470 1.08436 1.20908 0.99172 0.90748 0.96879 1.18718 0.93247 0.92658 1.06763 1.22329 0.94894 0.91246 0.94416 1.22916 1.02969 1.00292 0.97951 1.18543 0.81036 0.85524 0.82924 1.90976 1.58733 1.19000 1.68567 1.43398 1.50307 1.09805 1.27347 1.17174 0.92065 0.95217 0.87004 1.20296 1.00539 1.01670 1.02850 1.20541 0.97340 0.95810 0.94050 1.21284 1.03467 0.96296 1.04491 1.18865 0.92579 0.86446 0.89911 1.83588 1.50151 1.34158 1.43973 1.20781 1.11469 1.04067 1.10036 0.87555 1.24438 0.97512 0.96843 0.95030 1.69650 1.35668 1.24595 1.21885 0.86223 0.82380 0.80603 0.78030 1.19841 1.20766 1.18294 1.20152 1.05255 0.99463 0.96516 1.20803 0.93024 0.96668 0.91661 1.21048 0.99941 0.92257 1.09742 0.92146 0.88291 0.92745 0.85420 0.85509 0.84710 0.84914 0.75959 0.87263 0.86829 0.84926 0.91098 0.84708 0.86693 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.52 10.49 -18.92 -0.20 -4.71 16 3 C 0.14 2.06 6.70 -39.00 -0.26 1.80 16 4 C -0.16 -2.22 9.97 -39.50 -0.39 -2.61 16 5 C -0.06 -0.72 9.79 -39.14 -0.38 -1.10 16 6 C -0.11 -1.44 4.41 -105.05 -0.46 -1.90 16 7 C -0.01 -0.09 9.79 -37.19 -0.36 -0.45 16 8 C -0.22 -2.17 9.90 -37.53 -0.37 -2.54 16 9 C 0.53 7.60 6.60 -13.06 -0.09 7.51 16 10 O -0.50 -9.24 9.82 5.15 0.05 -9.18 16 11 N -0.66 -9.01 5.35 -11.19 -0.06 -9.07 16 12 C 0.18 3.20 6.37 -83.75 -0.53 2.66 16 13 C -0.23 -3.84 9.95 -39.33 -0.39 -4.23 16 14 C -0.06 -1.06 10.03 -39.64 -0.40 -1.45 16 15 C -0.24 -5.20 9.16 -39.36 -0.36 -5.56 16 16 C 0.18 4.28 6.64 -39.14 -0.26 4.02 16 17 O -0.21 -5.98 8.58 0.05 0.00 -5.98 16 18 C -0.39 -11.29 9.95 30.89 0.31 -10.98 16 19 H 0.11 3.12 5.44 -52.48 -0.29 2.84 16 20 C 0.06 1.88 5.49 -17.51 -0.10 1.78 16 21 N -0.88 -25.95 13.96 55.48 0.77 -25.18 16 22 Si 0.90 22.84 28.62 -169.99 -4.86 17.98 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.26 -6.69 7.11 56.52 0.40 -6.28 16 26 C -0.19 -4.24 8.62 -39.20 -0.34 -4.58 16 27 C 0.00 -0.05 6.73 -39.14 -0.26 -0.31 16 28 C -0.21 -3.04 9.01 -39.50 -0.36 -3.40 16 29 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.41 3.79 8.78 -40.82 -0.36 3.43 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.13 3.05 5.64 -52.49 -0.30 2.76 16 40 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.14 3.16 6.04 -52.49 -0.32 2.85 16 42 H 0.12 1.55 7.28 -52.49 -0.38 1.17 16 43 H 0.13 1.63 6.27 -52.49 -0.33 1.30 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -34.85 366.59 -7.65 -42.50 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.86 Total: 8.20 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -4.02 Total: -20.08 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.71 Total: -34.25 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.15 Total: -19.88 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.86 Total: 17.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.85 -7.65 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077816207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.753 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds