Wall clock time and date at job start Tue Mar 31 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34686 * 117.00485 * 2 1 4 4 O 1.21450 * 119.99869 * 0.02562 * 3 2 1 5 5 C 1.47915 * 120.00199 * 180.02562 * 3 2 1 6 6 C 1.39607 * 120.00119 * 180.02562 * 5 3 2 7 7 C 1.37810 * 119.99428 * 180.02562 * 6 5 3 8 8 C 1.39573 * 120.00501 * 359.97438 * 7 6 5 9 9 C 1.48007 * 119.99835 * 180.02562 * 8 7 6 10 10 O 1.21536 * 119.99503 * 329.87945 * 9 8 7 11 11 N 1.34775 * 120.00248 * 149.88288 * 9 8 7 12 12 C 1.46503 * 119.99965 * 7.23147 * 11 9 8 13 13 C 1.50692 * 109.47107 * 98.87893 * 12 11 9 14 14 H 1.07998 * 120.00225 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00293 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99831 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00408 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47052 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47436 * 120.00015 * 17 15 13 20 20 H 1.48499 * 109.47219 * 239.99965 * 17 15 13 21 21 C 1.39823 * 120.00197 * 187.23482 * 11 9 8 22 22 C 1.38891 * 120.07473 * 187.59126 * 21 11 9 23 23 C 1.38107 * 119.92922 * 179.78719 * 22 21 11 24 24 C 1.38289 * 120.06935 * 0.49448 * 23 22 21 25 25 C 1.38284 * 120.14639 * 359.73835 * 24 23 22 26 26 C 1.38102 * 120.07554 * 0.02562 * 25 24 23 27 27 C 1.39577 * 120.00645 * 0.27877 * 8 7 6 28 28 C 1.37809 * 120.00252 * 359.44298 * 27 8 7 29 29 H 1.08999 * 109.46825 * 299.99770 * 1 2 3 30 30 H 1.08999 * 109.47188 * 59.99404 * 1 2 3 31 31 H 1.09002 * 109.47557 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00919 * 359.97438 * 6 5 3 33 33 H 1.07997 * 119.99674 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47109 * 218.88630 * 12 11 9 35 35 H 1.09009 * 109.47025 * 338.88134 * 12 11 9 36 36 H 0.96994 * 119.99778 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.03541 * 0.02562 * 22 21 11 38 38 H 1.07997 * 119.96703 * 180.25513 * 23 22 21 39 39 H 1.08005 * 119.92656 * 179.72392 * 24 23 22 40 40 H 1.08003 * 119.96410 * 180.02562 * 25 24 23 41 41 H 1.07996 * 120.04104 * 179.97438 * 26 25 24 42 42 H 1.07997 * 119.99756 * 179.72572 * 27 8 7 43 43 H 1.07994 * 120.00129 * 180.27313 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2186 0.0005 5 6 3.5406 1.2773 -0.0006 6 6 4.1745 2.5212 0.0000 7 6 5.5508 2.5931 -0.0011 8 6 6.3108 1.4225 -0.0022 9 6 7.7889 1.4999 -0.0028 10 8 8.3478 2.4412 -0.5306 11 7 8.5149 0.5265 0.5819 12 6 7.8537 -0.6833 1.0774 13 6 8.0054 -1.7891 0.0649 14 1 8.5411 -1.6089 -0.8553 15 6 7.4612 -3.0312 0.3139 16 7 6.8092 -3.2508 1.4348 17 14 7.6498 -4.4022 -0.9408 18 1 8.4201 -3.9024 -2.1080 19 1 8.3726 -5.5427 -0.3230 20 1 6.3071 -4.8514 -1.3888 21 6 9.8992 0.6713 0.7158 22 6 10.6692 -0.3907 1.1721 23 6 12.0368 -0.2457 1.2989 24 6 12.6383 0.9585 0.9819 25 6 11.8739 2.0194 0.5320 26 6 10.5065 1.8795 0.3982 27 6 5.6772 0.1788 -0.0081 28 6 4.3010 0.1066 -0.0012 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.5866 3.4271 0.0004 33 1 6.0412 3.5553 -0.0011 34 1 8.3108 -0.9875 2.0190 35 1 6.7948 -0.4793 1.2368 36 1 6.4267 -4.1248 1.6101 37 1 10.1995 -1.3301 1.4237 38 1 12.6367 -1.0724 1.6498 39 1 13.7074 1.0707 1.0863 40 1 12.3468 2.9584 0.2848 41 1 9.9100 2.7085 0.0471 42 1 6.2655 -0.7268 -0.0134 43 1 3.8108 -0.8557 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078999894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:33 Heat of formation + Delta-G solvation = -24.229415 kcal Electronic energy + Delta-G solvation = -28781.366547 eV Core-core repulsion = 24758.422263 eV Total energy + Delta-G solvation = -4022.944283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.78050 -40.30573 -38.58576 -37.44528 -36.40881 -35.61686 -32.98248 -31.79298 -30.95260 -30.34310 -29.16431 -27.93040 -27.54957 -24.77572 -23.50798 -22.89763 -21.90113 -21.71595 -20.72781 -19.53104 -17.92788 -17.14978 -17.00293 -16.85750 -16.57508 -16.36167 -15.87864 -14.94955 -14.86308 -14.74072 -14.35334 -14.08169 -13.93594 -13.60207 -13.47231 -13.28536 -13.15142 -12.85887 -12.62970 -12.48835 -12.28269 -12.09568 -12.03256 -11.61762 -11.38097 -11.14724 -11.02632 -10.86553 -10.66283 -10.57615 -10.37707 -10.25899 -9.96311 -9.34633 -9.08249 -8.92760 -8.80047 -8.46950 -8.36891 -7.27513 -6.45478 -4.57104 0.55223 1.59366 1.82406 1.97563 2.46435 2.66074 3.08925 3.19065 3.21937 3.27701 3.47860 4.02933 4.13709 4.46737 4.68574 4.84682 4.90501 5.00302 5.07281 5.07925 5.16564 5.39712 5.43139 5.49924 5.53641 5.60722 5.68408 5.96950 6.02688 6.09191 6.10512 6.18962 6.29241 6.41686 6.48434 6.56519 6.65638 6.69646 6.85750 6.96739 6.99550 7.08751 7.09467 7.22142 7.49085 7.66759 7.71762 7.72397 7.97323 8.48315 8.62098 9.12001 10.58311 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.004004 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.632404 B = 6991.089659 C = 9276.277617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.512 3.488 4 O -0.512 6.512 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.080 4.080 8 C -0.099 4.099 9 C 0.555 3.445 10 O -0.534 6.534 11 N -0.526 5.526 12 C 0.195 3.805 13 C -0.549 4.549 14 H 0.070 0.930 15 C 0.073 3.927 16 N -0.877 5.877 17 Si 0.898 3.102 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.278 1.278 21 C 0.168 3.832 22 C -0.138 4.138 23 C -0.107 4.107 24 C -0.159 4.159 25 C -0.110 4.110 26 C -0.172 4.172 27 C -0.108 4.108 28 C -0.071 4.071 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.271 0.729 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.169 0.831 42 H 0.210 0.790 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 4.752 -0.015 6.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.357 3.643 4 O -0.401 6.401 5 C -0.115 4.115 6 C -0.097 4.097 7 C -0.099 4.099 8 C -0.102 4.102 9 C 0.347 3.653 10 O -0.415 6.415 11 N -0.244 5.244 12 C 0.077 3.923 13 C -0.586 4.586 14 H 0.088 0.912 15 C -0.133 4.133 16 N -0.513 5.513 17 Si 0.724 3.276 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.204 1.204 21 C 0.072 3.928 22 C -0.158 4.158 23 C -0.125 4.125 24 C -0.178 4.178 25 C -0.129 4.129 26 C -0.191 4.191 27 C -0.125 4.125 28 C -0.090 4.090 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.161 0.839 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.186 0.814 42 H 0.226 0.774 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.035 5.339 -0.165 6.694 hybrid contribution -0.159 -0.977 -0.516 1.116 sum -4.194 4.361 -0.680 6.088 Atomic orbital electron populations 1.23273 0.76190 1.03779 1.02448 1.86591 1.23368 1.32584 1.84109 1.21387 0.89297 0.81319 0.72252 1.90796 1.66918 1.36095 1.46319 1.19293 0.88591 0.95456 1.08201 1.21019 0.94075 0.96516 0.98045 1.21082 0.92719 0.98099 0.97959 1.20143 0.92929 0.94687 1.02395 1.18444 0.87043 0.81725 0.78137 1.90443 1.71267 1.34755 1.45067 1.45830 1.05141 1.19762 1.53641 1.20669 0.95542 0.79903 0.96198 1.21401 1.37072 0.95192 1.04981 0.91223 1.24972 0.94246 0.98450 0.95672 1.69930 1.34017 1.23989 1.23347 0.86411 0.78398 0.81427 0.81327 1.19337 1.20511 1.20396 1.17996 0.82836 0.94220 0.97710 1.21191 0.93521 0.98921 1.02198 1.20886 0.94187 0.97241 1.00212 1.20996 0.99190 0.94183 1.03427 1.20981 0.93771 0.98358 0.99750 1.22389 0.95475 0.98479 1.02767 1.23489 0.95426 1.00943 0.92600 1.21548 0.93936 0.97748 0.95726 0.91886 0.91924 0.87943 0.84454 0.84437 0.93752 0.90563 0.91911 0.83945 0.86444 0.87104 0.86731 0.81449 0.77385 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.77 9.80 -40.45 -0.40 -5.17 16 3 C 0.51 7.79 7.90 34.69 0.27 8.07 16 4 O -0.51 -8.45 16.12 -19.23 -0.31 -8.76 16 5 C -0.11 -1.78 5.88 -104.91 -0.62 -2.40 16 6 C -0.08 -1.16 9.58 -39.23 -0.38 -1.54 16 7 C -0.08 -1.25 9.58 -39.24 -0.38 -1.63 16 8 C -0.10 -1.80 5.60 -104.90 -0.59 -2.38 16 9 C 0.56 11.25 7.36 -12.26 -0.09 11.16 16 10 O -0.53 -11.22 13.24 5.33 0.07 -11.15 16 11 N -0.53 -10.96 2.70 -115.74 -0.31 -11.27 16 12 C 0.19 4.24 4.02 -5.20 -0.02 4.22 16 13 C -0.55 -12.76 6.62 -34.44 -0.23 -12.99 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.07 1.70 5.35 -17.82 -0.10 1.60 16 16 N -0.88 -21.22 13.29 55.43 0.74 -20.48 16 17 Si 0.90 18.80 29.54 -169.99 -5.02 13.78 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 C 0.17 3.40 6.43 -83.72 -0.54 2.87 16 22 C -0.14 -2.65 8.95 -39.39 -0.35 -3.00 16 23 C -0.11 -1.75 10.04 -39.61 -0.40 -2.14 16 24 C -0.16 -2.43 10.04 -39.55 -0.40 -2.83 16 25 C -0.11 -1.78 10.04 -39.61 -0.40 -2.18 16 26 C -0.17 -3.25 8.96 -39.38 -0.35 -3.60 16 27 C -0.11 -1.99 7.47 -39.24 -0.29 -2.28 16 28 C -0.07 -1.18 9.60 -39.23 -0.38 -1.55 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.14 1.81 7.64 -52.49 -0.40 1.40 16 33 H 0.14 1.96 7.92 -52.49 -0.42 1.54 16 34 H 0.04 1.02 7.09 -51.93 -0.37 0.65 16 35 H 0.08 1.66 3.94 -52.44 -0.21 1.45 16 36 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 37 H 0.14 2.89 6.05 -52.49 -0.32 2.58 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 41 H 0.17 3.30 4.76 -54.93 -0.26 3.04 16 42 H 0.21 4.34 3.13 -52.49 -0.16 4.18 16 43 H 0.14 2.21 7.60 -52.49 -0.40 1.81 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -26.67 362.85 -8.53 -35.21 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.61 Total: 11.56 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -4.15 Total: -9.18 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.42 Total: -31.75 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.64 Total: -25.09 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.67 -8.53 -35.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.976 kcal (2) G-P(sol) polarization free energy of solvation -26.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds