Wall clock time and date at job start Tue Mar 31 2020 07:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46642 * 2 1 4 4 C 1.52996 * 109.47240 * 119.99552 * 2 1 3 5 5 S 1.81406 * 109.47189 * 65.00100 * 4 2 1 6 6 O 1.42105 * 108.57416 * 65.51356 * 5 4 2 7 7 O 1.42101 * 108.57923 * 294.49032 * 5 4 2 8 8 C 1.81395 * 101.92070 * 180.02562 * 5 4 2 9 9 C 1.50707 * 109.46757 * 180.02562 * 8 5 4 10 10 O 1.21285 * 120.00043 * 354.35601 * 9 8 5 11 11 N 1.34782 * 119.99514 * 174.35785 * 9 8 5 12 12 C 1.46505 * 119.99324 * 184.44998 * 11 9 8 13 13 C 1.50704 * 109.47008 * 270.00122 * 12 11 9 14 14 H 1.08002 * 119.99834 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99771 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99695 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00010 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46625 * 90.00350 * 17 15 13 19 19 H 1.48501 * 109.46798 * 210.00583 * 17 15 13 20 20 H 1.48500 * 109.47240 * 330.00526 * 17 15 13 21 21 C 1.39919 * 120.00265 * 4.45382 * 11 9 8 22 22 C 1.38871 * 120.07335 * 66.77221 * 21 11 9 23 23 C 1.38106 * 119.93328 * 179.97438 * 22 21 11 24 24 C 1.38287 * 120.06921 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.14168 * 0.04231 * 24 23 22 26 26 C 1.38116 * 120.07028 * 359.95837 * 25 24 23 27 27 H 1.09000 * 109.47260 * 299.99697 * 1 2 3 28 28 H 1.09001 * 109.47092 * 60.00801 * 1 2 3 29 29 H 1.09005 * 109.46569 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47078 * 239.99816 * 2 1 3 31 31 H 1.08999 * 109.46842 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47194 * 299.99467 * 3 2 1 33 33 H 1.08997 * 109.47607 * 59.99688 * 3 2 1 34 34 H 1.09007 * 109.47276 * 305.00194 * 4 2 1 35 35 H 1.09000 * 109.47495 * 185.00350 * 4 2 1 36 36 H 1.08998 * 109.47267 * 60.00269 * 8 5 4 37 37 H 1.08998 * 109.47200 * 299.99741 * 8 5 4 38 38 H 1.08995 * 109.47086 * 30.00187 * 12 11 9 39 39 H 1.09003 * 109.46640 * 150.00250 * 12 11 9 40 40 H 0.97009 * 119.99567 * 179.97438 * 16 15 13 41 41 H 1.08001 * 120.03131 * 359.69724 * 22 21 11 42 42 H 1.08001 * 119.97130 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.93260 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.96946 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.03827 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 16 1.5602 -2.4691 1.1767 6 8 2.2383 -3.0798 0.0875 7 8 0.1434 -2.5529 1.2469 8 6 2.2540 -3.1126 2.7243 9 6 1.9477 -4.5838 2.8386 10 8 1.2371 -5.1210 2.0155 11 7 2.4636 -5.3024 3.8555 12 6 2.2467 -6.7502 3.9131 13 6 0.9835 -7.0387 4.6827 14 1 0.4004 -6.2250 5.0880 15 6 0.5724 -8.3414 4.8694 16 7 -0.5302 -8.5932 5.5406 17 14 1.5807 -9.7487 4.1677 18 1 2.5865 -10.1845 5.1695 19 1 0.6831 -10.8856 3.8403 20 1 2.2740 -9.2947 2.9355 21 6 3.2060 -4.6658 4.8561 22 6 2.5870 -3.7713 5.7194 23 6 3.3225 -3.1450 6.7064 24 6 4.6739 -3.4081 6.8358 25 6 5.2934 -4.2980 5.9776 26 6 4.5634 -4.9276 4.9885 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6054 -0.2616 2.1370 35 1 3.1264 -0.6442 1.2952 36 1 1.8127 -2.5826 3.5684 37 1 3.3340 -2.9654 2.7273 38 1 2.1536 -7.1441 2.9011 39 1 3.0922 -7.2246 4.4113 40 1 -0.8196 -9.5097 5.6716 41 1 1.5325 -3.5623 5.6162 42 1 2.8418 -2.4489 7.3778 43 1 5.2469 -2.9174 7.6087 44 1 6.3491 -4.5011 6.0809 45 1 5.0479 -5.6223 4.3182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078999976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:35 Heat of formation + Delta-G solvation = -73.529962 kcal Electronic energy + Delta-G solvation = -27953.577258 eV Core-core repulsion = 24063.939094 eV Total energy + Delta-G solvation = -3889.638164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.18966 -38.40080 -36.95738 -36.66666 -35.79077 -35.17814 -32.73292 -31.10280 -30.55187 -29.65694 -28.20168 -27.52325 -27.28682 -23.01210 -22.68724 -22.14252 -20.87132 -19.39165 -18.78729 -17.61312 -17.07266 -17.01255 -16.39475 -16.20262 -16.00511 -15.41489 -15.25018 -14.92337 -14.37254 -14.31399 -14.16622 -13.98760 -13.51843 -13.33627 -13.30752 -12.80163 -12.70786 -12.48451 -12.42713 -12.41508 -12.18967 -11.89560 -11.86118 -11.62777 -11.51876 -11.29995 -11.23591 -11.15232 -11.02769 -10.92020 -10.62834 -10.32814 -10.26353 -9.86328 -9.61768 -8.87578 -8.84808 -8.63528 -7.92008 -6.12732 -4.12789 -0.12825 1.35493 1.46035 2.74472 2.83062 3.20852 3.25413 3.35406 3.36033 3.74516 3.84482 3.94922 4.23332 4.35666 4.40148 4.47309 4.66465 4.79188 5.00536 5.01922 5.05291 5.13952 5.18547 5.18730 5.19894 5.22267 5.36914 5.50315 5.53544 5.63689 5.64012 5.76580 5.80106 5.90733 6.08085 6.14039 6.37641 6.50711 6.55878 6.58402 6.79117 6.89947 7.11044 7.49730 7.87503 8.32697 8.52140 8.89113 9.45165 11.00376 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.004031 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.716258 B = 6944.867060 C = 8541.051950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.618 4.618 5 S 2.447 3.553 6 O -0.924 6.924 7 O -0.911 6.911 8 C -0.658 4.658 9 C 0.543 3.457 10 O -0.511 6.511 11 N -0.543 5.543 12 C 0.216 3.784 13 C -0.532 4.532 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.892 5.892 17 Si 0.872 3.128 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.157 3.843 22 C -0.122 4.122 23 C -0.108 4.108 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.127 4.127 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.266 0.734 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.849 20.255 -3.040 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.103 4.103 3 C -0.198 4.198 4 C -0.746 4.746 5 S 2.625 3.375 6 O -0.921 6.921 7 O -0.908 6.908 8 C -0.786 4.786 9 C 0.328 3.672 10 O -0.387 6.387 11 N -0.270 5.270 12 C 0.097 3.903 13 C -0.570 4.570 14 H 0.095 0.905 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.698 3.302 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.065 3.935 22 C -0.142 4.142 23 C -0.127 4.127 24 C -0.149 4.149 25 C -0.127 4.127 26 C -0.147 4.147 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.854 19.284 -4.070 22.500 hybrid contribution 0.962 -0.432 0.827 1.340 sum 11.816 18.853 -3.243 22.485 Atomic orbital electron populations 1.22388 0.93657 1.05171 1.03041 1.20839 0.97004 0.97565 0.94867 1.21807 1.01097 0.94531 1.02370 1.30561 1.11903 1.24485 1.07674 1.07569 0.76368 0.77142 0.76438 1.93569 1.76404 1.73887 1.48232 1.93570 1.26523 1.85143 1.85557 1.30897 1.15424 1.05945 1.26284 1.18888 0.80352 0.85510 0.82403 1.90858 1.35405 1.71235 1.41159 1.45474 1.50211 1.10201 1.21158 1.19942 0.97837 0.73401 0.99118 1.21204 1.07170 0.94156 1.34513 0.90473 1.24807 0.94913 0.98478 0.94513 1.69882 1.22421 1.20344 1.40357 0.86909 0.80559 0.82526 0.80197 1.19980 1.20650 1.18711 1.17727 0.90222 0.94638 0.90870 1.21413 1.00088 0.97977 0.94678 1.21018 0.94145 0.99838 0.97681 1.21113 0.95000 0.99149 0.99656 1.20984 0.99743 0.96858 0.95157 1.21313 0.92830 1.00875 0.99667 0.91590 0.91462 0.89709 0.89544 0.92337 0.91938 0.92207 0.84743 0.84915 0.82520 0.82909 0.93316 0.94933 0.92403 0.85558 0.85796 0.86146 0.85873 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 8.83 37.16 0.33 -1.49 16 2 C -0.08 -0.74 2.92 -90.62 -0.26 -1.00 16 3 C -0.14 -0.92 9.19 37.16 0.34 -0.58 16 4 C -0.62 -5.06 5.26 37.16 0.20 -4.87 16 5 S 2.45 34.47 3.77 -107.50 -0.41 34.07 16 6 O -0.92 -16.16 18.05 -58.14 -1.05 -17.21 16 7 O -0.91 -16.13 15.19 -60.89 -0.93 -17.05 16 8 C -0.66 -8.94 4.95 36.01 0.18 -8.76 16 9 C 0.54 11.20 7.55 -10.98 -0.08 11.12 16 10 O -0.51 -12.84 15.26 2.13 0.03 -12.80 16 11 N -0.54 -11.35 2.51 -114.73 -0.29 -11.64 16 12 C 0.22 5.31 4.14 -5.19 -0.02 5.29 16 13 C -0.53 -15.39 9.94 -34.44 -0.34 -15.73 16 14 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 16 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 17 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 21 C 0.16 2.67 4.42 -83.70 -0.37 2.30 16 22 C -0.12 -1.83 8.46 -39.40 -0.33 -2.17 16 23 C -0.11 -1.29 10.04 -39.61 -0.40 -1.68 16 24 C -0.13 -1.41 10.04 -39.55 -0.40 -1.81 16 25 C -0.11 -1.26 10.04 -39.61 -0.40 -1.65 16 26 C -0.13 -1.83 9.64 -39.39 -0.38 -2.21 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.05 5.40 -51.93 -0.28 0.77 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.16 1.64 7.00 -51.93 -0.36 1.28 16 37 H 0.15 1.49 8.01 -51.92 -0.42 1.08 16 38 H 0.05 1.27 6.55 -51.93 -0.34 0.93 16 39 H 0.03 0.75 7.25 -51.93 -0.38 0.37 16 40 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.13 1.93 7.90 -52.49 -0.41 1.52 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -39.25 383.72 -9.64 -48.89 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.85 Total: 1.06 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.04 Total: -21.13 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.49 Total: -38.47 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.94 Total: -47.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 34.47 SS G_CDS: -0.41 Total: 34.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.25 -9.64 -48.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.639 kcal (2) G-P(sol) polarization free energy of solvation -39.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds