Wall clock time and date at job start Tue Mar 31 2020 04:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.51210 * 2 1 4 4 C 1.53232 * 109.49271 * 239.93008 * 2 1 3 5 5 N 1.47080 * 108.52475 * 186.20827 * 4 2 1 6 6 C 1.34771 * 120.88665 * 231.19396 * 5 4 2 7 7 O 1.21510 * 120.00012 * 359.71522 * 6 5 4 8 8 O 1.34632 * 120.00186 * 179.97438 * 6 5 4 9 9 C 1.45198 * 117.00084 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47293 * 59.99798 * 9 8 6 11 11 C 1.53001 * 109.47383 * 179.97438 * 9 8 6 12 12 C 1.53003 * 109.47133 * 299.99908 * 9 8 6 13 13 C 1.47079 * 118.23369 * 51.45498 * 5 4 2 14 14 C 1.53698 * 108.28183 * 308.49264 * 13 5 4 15 15 N 1.46897 * 109.25783 * 54.07501 * 14 13 5 16 16 C 1.46898 * 110.99851 * 172.61237 * 15 14 13 17 17 C 1.52997 * 109.47033 * 288.91023 * 16 15 14 18 18 H 1.08997 * 109.47167 * 55.00542 * 17 16 15 19 19 C 1.47197 * 109.47309 * 294.99848 * 17 16 15 20 20 N 4.71412 * 75.47384 * 136.73030 * 2 1 3 21 21 C 1.53006 * 109.46997 * 174.99961 * 17 16 15 22 22 C 1.50702 * 109.46929 * 185.00048 * 21 17 16 23 23 H 1.07993 * 120.00234 * 0.02562 * 22 21 17 24 24 C 1.37886 * 119.99723 * 180.02562 * 22 21 17 25 25 N 1.31510 * 119.99603 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99717 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47077 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.46621 * 119.99823 * 26 24 22 29 29 H 1.48496 * 109.47025 * 239.99656 * 26 24 22 30 30 H 1.08995 * 109.46723 * 187.38784 * 1 2 3 31 31 H 1.08997 * 109.47105 * 307.38585 * 1 2 3 32 32 H 1.08993 * 109.46970 * 67.38486 * 1 2 3 33 33 H 1.09007 * 109.63104 * 66.50126 * 4 2 1 34 34 H 1.08997 * 109.63061 * 305.92213 * 4 2 1 35 35 H 1.08998 * 109.47185 * 59.99963 * 10 9 8 36 36 H 1.09000 * 109.47558 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47194 * 299.99983 * 10 9 8 38 38 H 1.09001 * 109.47182 * 59.99578 * 11 9 8 39 39 H 1.08999 * 109.47305 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.47232 * 300.00114 * 11 9 8 41 41 H 1.08999 * 109.47184 * 60.00122 * 12 9 8 42 42 H 1.08999 * 109.47381 * 180.02562 * 12 9 8 43 43 H 1.09001 * 109.46745 * 300.00001 * 12 9 8 44 44 H 1.09001 * 109.62541 * 68.25577 * 13 5 4 45 45 H 1.09001 * 109.63341 * 188.83574 * 13 5 4 46 46 H 1.09002 * 109.64401 * 294.07889 * 14 13 5 47 47 H 1.08996 * 109.44236 * 173.96022 * 14 13 5 48 48 H 1.08999 * 109.47408 * 48.91218 * 16 15 14 49 49 H 1.09003 * 109.46995 * 168.91409 * 16 15 14 50 50 H 1.08999 * 109.47298 * 305.00247 * 21 17 16 51 51 H 1.09004 * 109.46841 * 65.00035 * 21 17 16 52 52 H 0.97012 * 119.99324 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2501 5 7 3.5043 -0.8432 -1.1554 6 6 4.2978 -0.4490 -2.1709 7 8 3.8063 0.0076 -3.1840 8 8 5.6348 -0.5659 -2.0650 9 6 6.4272 -0.1219 -3.1978 10 6 6.1634 1.3632 -3.4538 11 6 7.9122 -0.3307 -2.8946 12 6 6.0409 -0.9298 -4.4384 13 6 4.0779 -1.4097 0.0748 14 6 3.4866 -0.6536 1.2752 15 7 2.0202 -0.6937 1.1985 16 6 1.4140 -0.1358 2.4147 17 6 1.6335 -1.0998 3.5823 18 1 2.6981 -1.3102 3.6846 19 6 0.9078 -2.3545 3.3259 20 7 0.3477 -3.3228 3.1279 21 6 1.1131 -0.4642 4.8731 22 6 1.4393 -1.3594 6.0408 23 1 1.9655 -2.2883 5.8786 24 6 1.0658 -0.9922 7.3163 25 7 0.4245 0.1388 7.5137 26 14 1.4695 -2.1021 8.7636 27 1 2.1885 -3.3072 8.2777 28 1 2.3286 -1.3671 9.7264 29 1 0.2119 -2.5145 9.4370 30 1 -0.3632 -1.0191 0.1321 31 1 -0.3633 0.6240 0.8165 32 1 -0.3633 0.3952 -0.9486 33 1 1.7777 -0.1504 -2.1389 34 1 1.5958 -1.7169 -1.3062 35 1 6.4386 1.9388 -2.5701 36 1 6.7586 1.6967 -4.3040 37 1 5.1055 1.5124 -3.6697 38 1 8.1005 -1.3887 -2.7119 39 1 8.5070 0.0022 -3.7452 40 1 8.1872 0.2451 -2.0109 41 1 4.9830 -0.7806 -4.6542 42 1 6.6360 -0.5968 -5.2887 43 1 6.2288 -1.9879 -4.2559 44 1 3.8243 -2.4676 0.1436 45 1 5.1613 -1.2901 0.0625 46 1 3.8235 0.3829 1.2573 47 1 3.8157 -1.1272 2.2001 48 1 1.8769 0.8240 2.6440 49 1 0.3449 0.0051 2.2560 50 1 1.5865 0.5071 5.0165 51 1 0.0328 -0.3353 4.8047 52 1 0.1621 0.3973 8.4112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079031470.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:34 Heat of formation + Delta-G solvation = -54.156918 kcal Electronic energy + Delta-G solvation = -30371.312487 eV Core-core repulsion = 26371.031949 eV Total energy + Delta-G solvation = -4000.280538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.08119 -39.46065 -37.40187 -36.28521 -34.99474 -34.11640 -33.54398 -32.70896 -31.45706 -28.39569 -27.69513 -27.64856 -27.27013 -25.98728 -23.41065 -22.88118 -21.98657 -21.65943 -20.19095 -19.35401 -18.03857 -17.04671 -16.73464 -16.52059 -16.34730 -15.65876 -15.42985 -15.03046 -14.73267 -14.69932 -14.58214 -14.24336 -13.90679 -13.76445 -13.35554 -12.97434 -12.83628 -12.77791 -12.44926 -12.36248 -12.26632 -12.20958 -12.17162 -11.96423 -11.95842 -11.71509 -11.63079 -11.55813 -11.26342 -11.22815 -11.21893 -11.07365 -11.00272 -10.65375 -10.60158 -10.52551 -10.15577 -10.11827 -9.57450 -9.25520 -8.95121 -8.48351 -8.26496 -6.12068 -4.15087 1.94098 2.67373 3.26750 3.35291 3.39572 3.59237 3.69496 3.80124 3.86877 4.39241 4.43324 4.47902 4.61754 4.65490 4.73013 4.84592 4.95880 5.06345 5.10308 5.17565 5.22977 5.24829 5.26371 5.29992 5.39946 5.45455 5.49083 5.55591 5.57347 5.61346 5.62290 5.66956 5.70232 5.78199 5.82822 5.88427 6.00993 6.02447 6.03447 6.16954 6.24022 6.27007 6.36620 6.46792 7.02009 7.07831 7.24037 7.39844 7.49962 7.83388 8.16713 8.20648 8.57670 8.89958 9.50626 10.98821 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.002397 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.997938 B =11680.524472 C =12351.439707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.047 0.953 4 C 0.139 3.861 5 N -0.595 5.595 6 C 0.654 3.346 7 O -0.573 6.573 8 O -0.362 6.362 9 C 0.136 3.864 10 C -0.183 4.183 11 C -0.141 4.141 12 C -0.183 4.183 13 C 0.116 3.884 14 C 0.037 3.963 15 N -0.537 5.537 16 C 0.056 3.944 17 C 0.012 3.988 18 H 0.099 0.901 19 C 0.257 3.743 20 N -0.480 5.480 21 C 0.031 3.969 22 C -0.525 4.525 23 H 0.057 0.943 24 C 0.062 3.938 25 N -0.891 5.891 26 Si 0.891 3.109 27 H -0.272 1.272 28 H -0.283 1.283 29 H -0.284 1.284 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.042 0.958 47 H 0.097 0.903 48 H 0.055 0.945 49 H 0.088 0.912 50 H 0.037 0.963 51 H 0.026 0.974 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.981 3.437 -21.880 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.039 4.039 3 H 0.065 0.935 4 C 0.017 3.983 5 N -0.335 5.335 6 C 0.409 3.591 7 O -0.464 6.464 8 O -0.277 6.277 9 C 0.099 3.901 10 C -0.240 4.240 11 C -0.198 4.198 12 C -0.240 4.240 13 C -0.006 4.006 14 C -0.092 4.092 15 N -0.262 5.262 16 C -0.072 4.072 17 C -0.010 4.010 18 H 0.116 0.884 19 C -0.060 4.060 20 N -0.157 5.157 21 C -0.007 4.007 22 C -0.563 4.563 23 H 0.076 0.924 24 C -0.140 4.140 25 N -0.530 5.530 26 Si 0.719 3.281 27 H -0.197 1.197 28 H -0.209 1.209 29 H -0.210 1.210 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.060 0.940 47 H 0.116 0.884 48 H 0.073 0.927 49 H 0.106 0.894 50 H 0.055 0.945 51 H 0.044 0.956 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.856 1.745 -22.448 24.996 hybrid contribution 0.689 0.656 1.146 1.490 sum 11.545 2.401 -21.301 24.347 Atomic orbital electron populations 1.21903 0.93190 1.03453 1.02226 1.21960 0.96098 0.95732 0.90133 0.93496 1.21824 0.76321 1.01879 0.98278 1.47057 1.06317 1.64370 1.15793 1.17949 0.80859 0.77303 0.82968 1.90872 1.75304 1.50602 1.29575 1.86297 1.16908 1.79274 1.45211 1.22057 0.89811 0.94554 0.83695 1.22507 1.05090 0.94143 1.02247 1.21859 0.91747 1.03249 1.02937 1.22509 1.04898 0.99859 0.96720 1.21977 0.98422 0.98171 0.82071 1.22646 0.88032 0.99543 0.98952 1.62033 1.06001 1.55844 1.02306 1.22366 1.00960 0.96043 0.87829 1.19218 0.98894 0.85942 0.96919 0.88361 1.28829 0.92787 0.93973 0.90421 1.80989 1.10763 1.12291 1.11608 1.19176 0.97296 0.96339 0.87935 1.21168 1.37633 1.05961 0.91544 0.92448 1.24956 0.94875 0.95135 0.99030 1.69949 1.39174 1.21937 1.21938 0.86543 0.78215 0.80854 0.82521 1.19663 1.20869 1.20972 0.91184 0.91401 0.91877 0.88507 0.90314 0.92170 0.91240 0.89430 0.91452 0.90216 0.91395 0.89387 0.91252 0.92219 0.90305 0.88776 0.93994 0.88439 0.92709 0.89410 0.94521 0.95588 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.51 37.16 0.32 -1.23 16 2 C 0.07 0.77 2.60 -67.59 -0.18 0.60 16 3 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.14 1.53 5.88 -3.61 -0.02 1.51 16 5 N -0.60 -6.87 3.00 -177.97 -0.53 -7.41 16 6 C 0.65 8.18 7.75 54.05 0.42 8.60 16 7 O -0.57 -8.07 11.33 -19.28 -0.22 -8.29 16 8 O -0.36 -4.07 8.57 -40.30 -0.35 -4.41 16 9 C 0.14 1.23 1.13 -90.62 -0.10 1.13 16 10 C -0.18 -1.62 8.37 37.16 0.31 -1.31 16 11 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 12 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 13 C 0.12 1.21 6.64 -3.36 -0.02 1.19 16 14 C 0.04 0.41 5.48 -3.46 -0.02 0.39 16 15 N -0.54 -6.65 4.13 -226.06 -0.93 -7.59 16 16 C 0.06 0.78 4.11 -3.83 -0.02 0.77 16 17 C 0.01 0.21 2.22 -93.41 -0.21 0.01 16 18 H 0.10 1.60 6.43 -51.93 -0.33 1.27 16 19 C 0.26 5.14 13.67 -20.76 -0.28 4.85 16 20 N -0.48 -10.50 18.54 42.15 0.78 -9.72 16 21 C 0.03 0.70 4.42 -27.88 -0.12 0.57 16 22 C -0.52 -13.65 8.60 -34.44 -0.30 -13.95 16 23 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 24 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 26 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.71 6.46 -51.93 -0.34 0.38 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.07 7.06 -51.92 -0.37 0.71 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.98 5.89 -51.93 -0.31 0.68 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.98 5.87 -51.93 -0.30 0.68 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 0.88 6.98 -51.93 -0.36 0.52 16 46 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 1.06 6.35 -51.93 -0.33 0.73 16 48 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 49 H 0.09 1.23 5.54 -51.93 -0.29 0.95 16 50 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.26 7.02 8.31 -40.81 -0.34 6.68 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -30.90 408.46 -7.98 -38.88 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -8.92 Total: -2.04 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 0.32 Total: 2.81 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.05 Total: -49.11 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.56 Total: -12.70 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.90 -7.98 -38.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079031470.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.274 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds