Wall clock time and date at job start Tue Mar 31 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.50944 * 2 1 4 4 C 1.53228 * 109.49447 * 120.06618 * 2 1 3 5 5 N 1.47087 * 108.52388 * 173.79239 * 4 2 1 6 6 C 1.34769 * 120.88196 * 128.83565 * 5 4 2 7 7 O 1.21515 * 120.00310 * 0.02562 * 6 5 4 8 8 O 1.34634 * 120.00176 * 180.02562 * 6 5 4 9 9 C 1.45199 * 117.00609 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47231 * 59.99422 * 9 8 6 11 11 C 1.53000 * 109.47493 * 179.97438 * 9 8 6 12 12 C 1.53008 * 109.46857 * 299.99753 * 9 8 6 13 13 C 1.47078 * 118.23349 * 308.81547 * 5 4 2 14 14 C 1.53240 * 108.52159 * 51.18280 * 13 5 4 15 15 N 1.46894 * 109.49218 * 239.93692 * 2 1 3 16 16 C 1.46903 * 111.00619 * 52.78320 * 15 2 1 17 17 C 1.53003 * 109.47029 * 76.84044 * 16 15 2 18 18 H 1.09001 * 109.46816 * 53.05696 * 17 16 15 19 19 C 1.47199 * 109.46864 * 293.06059 * 17 16 15 20 20 N 3.09489 * 89.82081 * 342.72198 * 2 1 3 21 21 C 1.53002 * 109.46829 * 173.06003 * 17 16 15 22 22 C 1.50698 * 109.46528 * 185.00071 * 21 17 16 23 23 H 1.08000 * 120.00792 * 359.97438 * 22 21 17 24 24 C 1.37875 * 119.99502 * 180.02562 * 22 21 17 25 25 N 1.31521 * 120.00220 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00187 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47171 * 90.00569 * 26 24 22 28 28 H 1.48504 * 109.46988 * 210.00289 * 26 24 22 29 29 H 1.48499 * 109.47309 * 330.00273 * 26 24 22 30 30 H 1.09005 * 109.46410 * 172.77620 * 1 2 3 31 31 H 1.08994 * 109.47005 * 292.77308 * 1 2 3 32 32 H 1.09000 * 109.47130 * 52.77931 * 1 2 3 33 33 H 1.09006 * 109.63233 * 293.50010 * 4 2 1 34 34 H 1.08999 * 109.63117 * 53.88961 * 4 2 1 35 35 H 1.08998 * 109.47241 * 60.00012 * 10 9 8 36 36 H 1.08998 * 109.47300 * 180.02562 * 10 9 8 37 37 H 1.09008 * 109.47309 * 300.00596 * 10 9 8 38 38 H 1.08996 * 109.47112 * 59.99420 * 11 9 8 39 39 H 1.08998 * 109.47396 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.46582 * 299.99745 * 11 9 8 41 41 H 1.08995 * 109.46917 * 59.99514 * 12 9 8 42 42 H 1.08998 * 109.46885 * 179.97438 * 12 9 8 43 43 H 1.08996 * 109.46821 * 300.00012 * 12 9 8 44 44 H 1.09003 * 109.62668 * 170.89175 * 13 5 4 45 45 H 1.09001 * 109.62809 * 291.47290 * 13 5 4 46 46 H 1.08997 * 109.49404 * 186.20867 * 14 13 5 47 47 H 1.08997 * 109.49275 * 66.12737 * 14 13 5 48 48 H 1.08996 * 109.46592 * 316.84120 * 16 15 2 49 49 H 1.08995 * 109.47098 * 196.84048 * 16 15 2 50 50 H 1.08995 * 109.47108 * 304.99792 * 21 17 16 51 51 H 1.08995 * 109.46778 * 64.99938 * 21 17 16 52 52 H 0.96997 * 120.00274 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0414 -0.7237 1.2501 5 7 3.5044 -0.8431 1.1553 6 6 4.2978 -0.4493 2.1711 7 8 3.8064 0.0112 3.1826 8 8 5.6348 -0.5662 2.0652 9 6 6.4272 -0.1226 3.1982 10 6 6.0408 -0.9309 4.4384 11 6 7.9122 -0.3325 2.8955 12 6 6.1634 1.3625 3.4548 13 6 4.0783 -1.4040 -0.0772 14 6 3.4867 -0.6535 -1.2751 15 7 2.0202 -0.6937 -1.1985 16 6 1.4140 -0.1358 -2.4147 17 6 2.0886 1.1941 -2.7569 18 1 3.1684 1.0525 -2.8030 19 6 1.7679 2.1881 -1.7197 20 7 1.5204 2.9552 -0.9192 21 6 1.5808 1.6896 -4.1125 22 6 2.3338 2.9340 -4.5066 23 1 3.0978 3.3321 -3.8552 24 6 2.0466 3.5651 -5.6983 25 7 2.7034 4.6515 -6.0421 26 14 0.7248 2.8771 -6.8247 27 1 -0.5863 3.4807 -6.4757 28 1 1.0588 3.2006 -8.2351 29 1 0.6511 1.4033 -6.6590 30 1 -0.3632 -1.0196 -0.1292 31 1 -0.3633 0.3978 0.9475 32 1 -0.3633 0.6216 -0.8183 33 1 1.7777 -0.1502 2.1388 34 1 1.5933 -1.7156 1.3081 35 1 6.2287 -1.9889 4.2556 36 1 6.6353 -0.5977 5.2891 37 1 4.9828 -0.7818 4.6543 38 1 8.1877 0.2430 2.0118 39 1 8.5070 0.0000 3.7462 40 1 8.0997 -1.3906 2.7130 41 1 5.1055 1.5116 3.6706 42 1 6.7579 1.6954 4.3056 43 1 6.4387 1.9383 2.5713 44 1 5.1612 -1.2803 -0.0661 45 1 3.8285 -2.4626 -0.1487 46 1 3.8157 -1.1275 -2.1999 47 1 3.8235 0.3830 -1.2574 48 1 0.3497 0.0291 -2.2473 49 1 1.5480 -0.8343 -3.2407 50 1 1.7384 0.9162 -4.8643 51 1 0.5170 1.9157 -4.0414 52 1 2.5016 5.0953 -6.8807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079031475.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:41 Heat of formation + Delta-G solvation = -39.635833 kcal Electronic energy + Delta-G solvation = -31127.693436 eV Core-core repulsion = 27128.042579 eV Total energy + Delta-G solvation = -3999.650857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.04901 -39.78908 -37.52665 -36.22858 -34.89115 -34.22887 -33.58938 -32.66893 -31.56394 -28.62824 -27.62200 -27.54991 -27.28643 -26.14818 -23.69402 -22.92739 -21.92452 -21.61147 -19.98908 -19.22279 -17.99165 -17.15791 -16.85582 -16.66602 -16.27521 -15.82699 -15.45701 -15.33387 -14.70889 -14.64760 -14.55553 -14.08857 -13.88072 -13.64893 -13.41530 -13.13883 -12.78452 -12.67569 -12.53411 -12.37210 -12.34543 -12.22174 -12.16372 -12.08318 -11.93202 -11.75549 -11.71710 -11.59536 -11.49885 -11.35185 -11.25752 -11.11959 -10.96156 -10.69451 -10.51589 -10.27885 -10.14146 -10.05651 -9.94122 -9.41422 -8.93364 -8.66745 -8.13492 -6.15746 -4.17171 2.00347 2.75473 3.23020 3.30357 3.31258 3.42076 3.45751 3.65596 3.86456 4.33470 4.51729 4.54943 4.56409 4.68312 4.70900 4.78540 4.96510 5.11168 5.14115 5.18739 5.24992 5.25647 5.33855 5.37759 5.37924 5.46053 5.47461 5.54089 5.58414 5.62779 5.67074 5.68291 5.74988 5.78185 5.83510 5.90273 5.99386 6.07534 6.13251 6.14995 6.19135 6.25987 6.30699 6.35642 6.86812 6.97036 6.98779 7.05921 7.28661 7.57437 8.23053 8.24337 8.36014 8.86506 9.43756 10.97314 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.002932 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.051690 B = 9545.934680 C =10277.547376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 H 0.064 0.936 4 C 0.142 3.858 5 N -0.596 5.596 6 C 0.654 3.346 7 O -0.571 6.571 8 O -0.362 6.362 9 C 0.136 3.864 10 C -0.182 4.182 11 C -0.140 4.140 12 C -0.184 4.184 13 C 0.118 3.882 14 C 0.030 3.970 15 N -0.529 5.529 16 C 0.052 3.948 17 C -0.025 4.025 18 H 0.109 0.891 19 C 0.237 3.763 20 N -0.460 5.460 21 C -0.001 4.001 22 C -0.530 4.530 23 H 0.071 0.929 24 C 0.071 3.929 25 N -0.896 5.896 26 Si 0.878 3.122 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.262 1.262 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.048 0.952 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.039 0.961 51 H 0.020 0.980 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -17.124 15.112 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 H 0.082 0.918 4 C 0.020 3.980 5 N -0.336 5.336 6 C 0.409 3.591 7 O -0.461 6.461 8 O -0.277 6.277 9 C 0.099 3.901 10 C -0.239 4.239 11 C -0.197 4.197 12 C -0.242 4.242 13 C -0.005 4.005 14 C -0.098 4.098 15 N -0.252 5.252 16 C -0.077 4.077 17 C -0.048 4.048 18 H 0.127 0.873 19 C -0.079 4.079 20 N -0.137 5.137 21 C -0.040 4.040 22 C -0.568 4.568 23 H 0.089 0.911 24 C -0.131 4.131 25 N -0.534 5.534 26 Si 0.705 3.295 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.186 1.186 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.066 0.934 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.058 0.942 51 H 0.038 0.962 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.459 -16.170 16.591 23.593 hybrid contribution -0.212 0.614 -1.178 1.345 sum 4.247 -15.555 15.413 22.306 Atomic orbital electron populations 1.21847 0.93287 1.02730 1.02428 1.22331 0.96290 0.97519 0.90161 0.91790 1.21764 0.76352 1.01475 0.98403 1.47008 1.06275 1.64730 1.15594 1.17949 0.80879 0.77234 0.83013 1.90880 1.75299 1.50080 1.29826 1.86284 1.16856 1.79286 1.45253 1.22060 0.89794 0.94613 0.83621 1.22503 1.04896 0.99733 0.96770 1.21855 0.91741 1.03128 1.03026 1.22520 1.05164 0.94116 1.02364 1.21869 0.98555 0.97928 0.82156 1.22615 0.88182 1.00154 0.98865 1.62305 1.06140 1.54581 1.02206 1.22572 0.99781 0.93091 0.92227 1.19770 1.02907 0.89933 0.92207 0.87328 1.28988 0.92976 0.93500 0.92445 1.81084 1.09359 1.10202 1.13039 1.19591 0.96895 0.97945 0.89579 1.21019 1.21453 1.08750 1.05599 0.91066 1.25005 0.95948 0.94499 0.97659 1.69908 1.41331 1.18735 1.23448 0.86803 0.82308 0.80195 0.80162 1.20267 1.21222 1.18594 0.91244 0.91945 0.91757 0.88696 0.90411 0.92267 0.91246 0.89436 0.91329 0.90216 0.91508 0.89415 0.91216 0.92040 0.88780 0.90370 0.88374 0.93412 0.89409 0.88321 0.94246 0.96171 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.44 37.16 0.31 -1.38 16 2 C 0.05 0.60 1.94 -67.59 -0.13 0.47 16 3 H 0.06 1.05 4.66 -51.93 -0.24 0.80 16 4 C 0.14 1.72 5.88 -3.60 -0.02 1.70 16 5 N -0.60 -7.50 3.01 -178.25 -0.54 -8.04 16 6 C 0.65 9.19 7.75 54.05 0.42 9.61 16 7 O -0.57 -9.09 11.33 -19.28 -0.22 -9.31 16 8 O -0.36 -4.54 8.57 -40.31 -0.35 -4.89 16 9 C 0.14 1.43 1.13 -90.62 -0.10 1.33 16 10 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 11 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 12 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 13 C 0.12 1.21 6.61 -3.60 -0.02 1.19 16 14 C 0.03 0.34 4.55 -3.70 -0.02 0.33 16 15 N -0.53 -6.27 4.68 -226.35 -1.06 -7.33 16 16 C 0.05 0.66 4.91 -3.82 -0.02 0.65 16 17 C -0.03 -0.42 1.75 -93.41 -0.16 -0.59 16 18 H 0.11 1.79 6.04 -51.93 -0.31 1.47 16 19 C 0.24 4.66 10.39 -20.76 -0.22 4.44 16 20 N -0.46 -9.91 17.62 42.15 0.74 -9.17 16 21 C 0.00 -0.02 3.49 -27.88 -0.10 -0.12 16 22 C -0.53 -14.07 9.15 -34.44 -0.32 -14.38 16 23 H 0.07 2.10 7.84 -52.49 -0.41 1.69 16 24 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 25 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 26 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.83 6.00 -51.93 -0.31 0.52 16 33 H 0.09 1.26 7.06 -51.93 -0.37 0.90 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.06 5.88 -51.92 -0.31 0.76 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.92 6.98 -51.93 -0.36 0.55 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 47 H 0.05 0.65 6.38 -51.93 -0.33 0.32 16 48 H 0.09 1.11 5.46 -51.93 -0.28 0.83 16 49 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.04 0.76 7.20 -51.93 -0.37 0.39 16 51 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 52 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -32.38 395.50 -7.53 -39.91 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.66 Total: 2.14 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 0.48 Total: 1.15 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.08 Total: -50.61 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.56 Total: -14.20 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.38 -7.53 -39.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079031475.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.273 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds