Wall clock time and date at job start Tue Mar 31 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47360 * 2 1 4 4 N 1.46506 * 109.47137 * 119.99814 * 2 1 3 5 5 C 1.34779 * 119.99851 * 275.00513 * 4 2 1 6 6 O 1.21557 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.47783 * 119.99810 * 179.97438 * 5 4 2 8 8 C 1.39617 * 120.12875 * 359.72280 * 7 5 4 9 9 C 1.37896 * 119.86259 * 179.79213 * 8 7 5 10 10 C 1.38513 * 120.13343 * 0.45753 * 9 8 7 11 11 Cl 1.73601 * 119.86530 * 179.76761 * 10 9 8 12 12 C 1.38507 * 120.26532 * 359.79275 * 10 9 8 13 13 C 1.37902 * 120.12977 * 359.97398 * 12 10 9 14 14 C 1.50696 * 109.47242 * 239.99745 * 2 1 3 15 15 O 1.21274 * 120.00119 * 240.00140 * 14 2 1 16 16 N 1.34777 * 119.99735 * 60.00427 * 14 2 1 17 17 C 1.46499 * 120.00065 * 359.97438 * 16 14 2 18 18 C 1.46506 * 120.00000 * 180.02562 * 16 14 2 19 19 H 1.08998 * 109.46566 * 359.97438 * 18 16 14 20 20 C 1.52997 * 109.47289 * 119.99453 * 18 16 14 21 21 C 1.50697 * 109.47015 * 239.99910 * 18 16 14 22 22 H 1.07998 * 120.00039 * 359.97438 * 21 18 16 23 23 C 1.37880 * 119.99815 * 179.97438 * 21 18 16 24 24 N 1.31508 * 119.99915 * 359.97438 * 23 21 18 25 25 Si 1.86805 * 119.99777 * 179.97438 * 23 21 18 26 26 H 1.48506 * 109.46954 * 59.99790 * 25 23 21 27 27 H 1.48496 * 109.46873 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47158 * 300.00368 * 25 23 21 29 29 H 1.09002 * 109.47144 * 300.00031 * 1 2 3 30 30 H 1.08995 * 109.46867 * 60.00072 * 1 2 3 31 31 H 1.08994 * 109.47054 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00180 * 95.00041 * 4 2 1 33 33 H 1.07999 * 120.06855 * 359.97438 * 8 7 5 34 34 H 1.08005 * 119.93583 * 180.20781 * 9 8 7 35 35 H 1.08003 * 119.93561 * 179.97438 * 12 10 9 36 36 H 1.07998 * 120.06468 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.46842 * 270.00180 * 17 16 14 38 38 H 1.08994 * 109.47173 * 30.00714 * 17 16 14 39 39 H 1.08998 * 109.46730 * 150.00747 * 17 16 14 40 40 H 1.09002 * 109.47153 * 179.97438 * 20 18 16 41 41 H 1.09001 * 109.46832 * 60.00146 * 20 18 16 42 42 H 1.09004 * 109.47261 * 300.00128 * 20 18 16 43 43 H 0.97001 * 119.99839 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1613 2.4117 7 6 2.6391 -0.7150 3.5640 8 6 2.9660 -2.0711 3.5059 9 6 3.4287 -2.7147 4.6342 10 6 3.5604 -2.0210 5.8258 11 17 4.1379 -2.8397 7.2436 12 6 3.2327 -0.6768 5.8909 13 6 2.7735 -0.0211 4.7680 14 6 2.0324 -0.7104 -1.2304 15 8 2.7296 -1.6965 -1.1191 16 7 1.7068 -0.2499 -2.4545 17 6 0.8642 0.9409 -2.5889 18 6 2.1947 -0.9409 -3.6507 19 1 2.8003 -1.7972 -3.3540 20 6 1.0044 -1.4214 -4.4833 21 6 3.0322 0.0059 -4.4712 22 1 3.1854 1.0208 -4.1354 23 6 3.6029 -0.4238 -5.6505 24 7 3.4168 -1.6598 -6.0590 25 14 4.6405 0.7501 -6.6679 26 1 5.7954 1.2174 -5.8597 27 1 5.1361 0.0493 -7.8797 28 1 3.8153 1.9165 -7.0726 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6317 1.1527 33 1 2.8595 -2.6141 2.5785 34 1 3.6852 -3.7630 4.5898 35 1 3.3371 -0.1411 6.8229 36 1 2.5179 1.0269 4.8200 37 1 -0.1837 0.6426 -2.6225 38 1 1.0274 1.5996 -1.7360 39 1 1.1219 1.4664 -3.5085 40 1 1.3674 -1.9351 -5.3735 41 1 0.3992 -0.5648 -4.7800 42 1 0.3987 -2.1062 -3.8898 43 1 3.8186 -1.9622 -6.8885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079047231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:56 Heat of formation + Delta-G solvation = -45.950936 kcal Electronic energy + Delta-G solvation = -26540.461067 eV Core-core repulsion = 22611.860681 eV Total energy + Delta-G solvation = -3928.600387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62379 -39.51542 -38.44604 -36.79023 -35.64466 -34.92233 -33.11626 -31.94113 -31.40281 -30.32473 -28.85335 -26.46779 -25.28022 -24.82452 -23.61864 -23.06102 -21.21783 -20.40544 -19.09617 -18.13340 -17.07881 -16.67814 -16.34509 -15.91720 -15.58110 -15.33647 -14.98863 -14.92107 -14.63962 -14.27937 -14.01757 -13.82487 -13.64558 -13.31200 -12.99818 -12.61397 -12.55161 -12.25989 -12.06782 -11.94881 -11.82279 -11.68346 -11.52633 -11.24169 -11.20543 -11.09684 -10.87779 -10.78299 -10.33097 -10.21812 -10.11459 -9.50235 -9.39746 -9.25795 -9.12558 -8.94475 -8.48235 -7.73333 -6.13078 -4.21415 0.33214 0.87960 1.67758 2.54609 2.90724 3.15074 3.25005 3.30287 3.32719 3.47716 3.85246 4.33266 4.35205 4.43061 4.49586 4.83674 4.85087 4.94652 5.14108 5.17823 5.18657 5.24336 5.51566 5.53900 5.70156 5.71840 5.76416 5.80814 5.91384 5.95131 6.10585 6.24246 6.31757 6.36734 6.68182 6.74948 6.97823 7.27775 7.42498 7.43416 7.64371 7.92819 8.06147 8.11973 8.39142 8.70684 8.88271 9.45103 10.92210 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.002248 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.432463 B =12450.949279 C =12955.876967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 H 0.112 0.888 4 N -0.701 5.701 5 C 0.560 3.440 6 O -0.538 6.538 7 C -0.126 4.126 8 C -0.070 4.070 9 C -0.117 4.117 10 C -0.014 4.014 11 Cl -0.066 7.066 12 C -0.120 4.120 13 C -0.047 4.047 14 C 0.501 3.499 15 O -0.552 6.552 16 N -0.583 5.583 17 C 0.076 3.924 18 C 0.258 3.742 19 H 0.064 0.936 20 C -0.146 4.146 21 C -0.529 4.529 22 H 0.060 0.940 23 C 0.066 3.934 24 N -0.887 5.887 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.030 0.970 42 H 0.011 0.989 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 0.371 21.017 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 H 0.129 0.871 4 N -0.354 5.354 5 C 0.347 3.653 6 O -0.416 6.416 7 C -0.129 4.129 8 C -0.089 4.089 9 C -0.135 4.135 10 C -0.041 4.041 11 Cl -0.037 7.037 12 C -0.139 4.139 13 C -0.066 4.066 14 C 0.287 3.713 15 O -0.431 6.431 16 N -0.313 5.313 17 C -0.068 4.068 18 C 0.158 3.842 19 H 0.082 0.918 20 C -0.205 4.205 21 C -0.567 4.567 22 H 0.078 0.922 23 C -0.137 4.137 24 N -0.525 5.525 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.202 1.202 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.247 0.753 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.050 0.950 42 H 0.030 0.970 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.412 0.483 20.998 21.462 hybrid contribution 0.752 0.114 -0.575 0.953 sum -3.660 0.597 20.423 20.757 Atomic orbital electron populations 1.22357 0.93099 1.03238 1.04030 1.20853 0.95603 0.98087 0.83950 0.87083 1.45682 1.66327 1.14932 1.08492 1.18117 0.77763 0.86443 0.82933 1.90771 1.50538 1.15277 1.85050 1.20071 1.03840 0.94391 0.94594 1.21414 0.95478 0.93395 0.98653 1.21034 1.00622 1.00999 0.90881 1.21215 1.00656 0.93418 0.88779 1.98389 1.87084 1.78985 1.39263 1.21055 1.00504 0.92563 0.99755 1.21253 0.94417 1.00760 0.90218 1.20263 0.81176 0.85107 0.84775 1.90635 1.39063 1.27201 1.86196 1.48178 1.48765 1.27833 1.06554 1.21851 0.93862 0.87966 1.03102 1.18991 0.92299 0.93436 0.79445 0.91826 1.22084 0.97296 0.98936 1.02135 1.21262 1.31297 0.98105 1.06065 0.92215 1.24887 0.96169 0.95304 0.97342 1.69861 1.44130 1.15700 1.22802 0.86541 0.80606 0.80739 0.79426 1.20227 1.21143 1.20169 0.91349 0.89564 0.91969 0.75288 0.84163 0.84094 0.84179 0.83539 0.93118 0.92338 0.89787 0.88756 0.95048 0.96977 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.12 37.16 0.34 -1.78 16 2 C 0.12 1.87 2.18 -69.08 -0.15 1.72 16 3 H 0.11 1.72 6.84 -51.93 -0.36 1.36 16 4 N -0.70 -9.79 4.90 -55.89 -0.27 -10.06 16 5 C 0.56 7.72 7.74 -12.36 -0.10 7.62 16 6 O -0.54 -8.71 16.01 5.32 0.09 -8.63 16 7 C -0.13 -1.41 5.87 -104.97 -0.62 -2.02 16 8 C -0.07 -0.67 9.54 -39.19 -0.37 -1.05 16 9 C -0.12 -1.00 9.81 -39.61 -0.39 -1.39 16 10 C -0.01 -0.12 6.33 -39.38 -0.25 -0.37 16 11 Cl -0.07 -0.53 28.95 -51.86 -1.50 -2.03 16 12 C -0.12 -1.01 9.81 -39.60 -0.39 -1.40 16 13 C -0.05 -0.47 9.59 -39.19 -0.38 -0.84 16 14 C 0.50 9.70 7.14 -10.99 -0.08 9.63 16 15 O -0.55 -12.43 15.16 5.56 0.08 -12.35 16 16 N -0.58 -11.72 2.75 -175.27 -0.48 -12.20 16 17 C 0.08 1.19 7.79 59.85 0.47 1.66 16 18 C 0.26 6.32 2.63 -69.08 -0.18 6.14 16 19 H 0.06 1.81 6.90 -51.93 -0.36 1.45 16 20 C -0.15 -3.35 8.97 37.16 0.33 -3.01 16 21 C -0.53 -13.86 7.99 -34.44 -0.28 -14.13 16 22 H 0.06 1.54 7.33 -52.49 -0.38 1.16 16 23 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 24 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 25 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.00 4.53 -51.93 -0.24 0.76 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.41 5.40 5.82 -40.82 -0.24 5.16 16 33 H 0.14 1.19 6.40 -52.49 -0.34 0.86 16 34 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.15 1.37 7.65 -52.49 -0.40 0.97 16 37 H 0.05 0.69 6.95 -51.93 -0.36 0.33 16 38 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 39 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 40 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 41 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -30.99 367.83 -8.38 -39.37 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.31 Total: 6.16 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.13 Total: 2.43 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.13 Total: -46.13 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.17 Total: -20.98 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.99 -8.38 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079047231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.585 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds