Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99393 * 2 1 4 4 H 1.48493 * 109.47231 * 240.00077 * 3 2 1 5 5 H 1.48497 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46551 * 120.00332 * 3 2 1 7 7 C 1.37879 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99803 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46888 * 184.73145 * 9 7 2 11 11 C 1.46903 * 111.00297 * 162.40714 * 10 9 7 12 12 C 1.50695 * 109.47005 * 288.09158 * 11 10 9 13 13 C 1.34518 * 125.78861 * 94.79041 * 12 11 10 14 14 C 1.41388 * 106.83841 * 179.97438 * 13 12 11 15 15 C 1.34511 * 106.84150 * 0.02562 * 14 13 12 16 16 O 1.34302 * 125.79167 * 274.48670 * 12 11 10 17 17 C 1.46905 * 110.99765 * 286.35872 * 10 9 7 18 18 C 1.50698 * 109.47202 * 170.00137 * 17 10 9 19 19 C 1.35599 * 119.88161 * 94.72534 * 18 17 10 20 20 C 1.46412 * 118.53395 * 179.74180 * 19 18 17 21 21 C 1.39881 * 121.15095 * 180.23621 * 20 19 18 22 22 C 1.36606 * 119.71770 * 180.29489 * 21 20 19 23 23 C 1.38841 * 120.58731 * 0.02562 * 22 21 20 24 24 C 1.37806 * 120.68983 * 359.93255 * 23 22 21 25 25 C 1.39116 * 119.74742 * 0.08528 * 24 23 22 26 26 N 1.37857 * 120.96902 * 179.91538 * 25 24 23 27 27 H 0.97003 * 119.52692 * 0.02739 * 26 25 24 28 28 C 1.34458 * 120.95444 * 180.02562 * 26 25 24 29 29 O 1.21881 * 119.17580 * 180.02562 * 28 26 25 30 30 H 0.96991 * 120.00531 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47395 * 64.73038 * 9 7 2 32 32 H 1.08996 * 109.47353 * 304.72562 * 9 7 2 33 33 H 1.09002 * 109.46905 * 48.09062 * 11 10 9 34 34 H 1.09000 * 109.47193 * 168.08901 * 11 10 9 35 35 H 1.07998 * 126.58100 * 359.96728 * 13 12 11 36 36 H 1.07997 * 126.57588 * 179.97438 * 14 13 12 37 37 H 1.07997 * 125.79134 * 180.02562 * 15 14 13 38 38 H 1.09001 * 109.46923 * 289.99988 * 17 10 9 39 39 H 1.09004 * 109.47109 * 50.00209 * 17 10 9 40 40 H 1.07995 * 120.73321 * 0.02562 * 19 18 17 41 41 H 1.07996 * 120.14004 * 0.27506 * 21 20 19 42 42 H 1.07997 * 119.70157 * 180.02562 * 22 21 20 43 43 H 1.07993 * 119.65159 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.12767 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2018 -3.6133 0.1131 11 6 1.5208 -4.8459 0.5312 12 6 1.1219 -4.7328 1.9800 13 6 -0.0776 -4.3300 2.4366 14 6 -0.0146 -4.3748 3.8483 15 6 1.2198 -4.8016 4.1700 16 8 1.9019 -5.0223 3.0343 17 6 2.9292 -3.8152 -1.1472 18 6 4.0566 -4.7904 -0.9258 19 6 3.8723 -6.1075 -1.1900 20 6 4.9893 -7.0280 -0.9698 21 6 4.8611 -8.3966 -1.2290 22 6 5.9205 -9.2300 -1.0073 23 6 7.1235 -8.7309 -0.5264 24 6 7.2727 -7.3861 -0.2649 25 6 6.2075 -6.5182 -0.4826 26 7 6.3285 -5.1688 -0.2279 27 1 7.1687 -4.8191 0.1078 28 6 5.2986 -4.3303 -0.4379 29 8 5.4414 -3.1431 -0.2022 30 1 -0.4850 0.8399 0.0004 31 1 0.6892 -2.5943 -0.9296 32 1 0.5629 -2.5213 0.8443 33 1 0.6307 -4.9945 -0.0802 34 1 2.1940 -5.6938 0.4048 35 1 -0.9259 -4.0300 1.8394 36 1 -0.8055 -4.1152 4.5364 37 1 1.5967 -4.9472 5.1715 38 1 2.2482 -4.2120 -1.9001 39 1 3.3344 -2.8629 -1.4895 40 1 2.9239 -6.4689 -1.5592 41 1 3.9284 -8.7927 -1.6025 42 1 5.8213 -10.2866 -1.2080 43 1 7.9511 -9.4034 -0.3562 44 1 8.2127 -7.0076 0.1086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081517693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = 38.213471 kcal Electronic energy + Delta-G solvation = -28927.854088 eV Core-core repulsion = 25005.336194 eV Total energy + Delta-G solvation = -3922.517895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.98180 -41.22871 -38.67919 -37.05897 -35.33341 -34.08630 -32.52554 -32.35011 -30.96299 -29.91729 -29.49043 -27.10422 -26.11726 -23.96736 -23.75679 -22.90493 -22.32928 -21.23095 -20.73255 -19.65294 -18.50603 -17.79815 -17.22814 -16.78436 -16.32812 -15.72357 -15.56096 -15.43557 -15.02532 -14.70653 -14.53930 -14.25454 -14.10633 -13.81210 -13.63051 -13.18070 -13.05592 -12.93422 -12.42218 -12.28445 -12.16520 -11.97970 -11.86321 -11.45382 -11.34224 -11.02169 -10.92136 -10.82813 -10.59936 -10.45735 -10.34197 -9.89006 -9.71650 -9.35114 -9.15203 -8.65618 -8.31422 -7.99578 -7.87327 -7.30823 -5.91587 -3.90360 0.44006 1.09476 1.77225 2.27017 2.99809 3.12727 3.18863 3.44626 3.46265 3.53236 3.54858 3.90696 4.39968 4.44624 4.55209 4.65786 4.72830 4.99907 5.01973 5.08418 5.13517 5.27998 5.44744 5.51633 5.54284 5.57645 5.59340 5.62975 5.74310 5.84504 5.88403 6.07320 6.12627 6.21842 6.31729 6.33000 6.46755 6.53094 6.59951 6.65098 6.78126 7.03709 7.11977 7.24146 7.30202 7.69582 7.91434 8.10979 8.19866 8.24337 8.59085 9.19504 9.73054 11.19342 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.003977 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.004330 B = 7038.391036 C = 8680.702099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.069 0.931 9 C 0.190 3.810 10 N -0.522 5.522 11 C 0.122 3.878 12 C 0.021 3.979 13 C -0.205 4.205 14 C -0.210 4.210 15 C -0.057 4.057 16 O -0.172 6.172 17 C 0.114 3.886 18 C -0.141 4.141 19 C -0.048 4.048 20 C -0.119 4.119 21 C -0.059 4.059 22 C -0.157 4.157 23 C -0.074 4.074 24 C -0.166 4.166 25 C 0.185 3.815 26 N -0.637 5.637 27 H 0.412 0.588 28 C 0.539 3.461 29 O -0.501 6.501 30 H 0.260 0.740 31 H -0.009 1.009 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.194 0.806 38 H 0.039 0.961 39 H 0.106 0.894 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.190 -21.068 -0.578 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.538 4.538 8 H 0.087 0.913 9 C 0.066 3.934 10 N -0.247 5.247 11 C -0.006 4.006 12 C -0.030 4.030 13 C -0.225 4.225 14 C -0.229 4.229 15 C -0.125 4.125 16 O -0.068 6.068 17 C -0.014 4.014 18 C -0.145 4.145 19 C -0.070 4.070 20 C -0.123 4.123 21 C -0.077 4.077 22 C -0.176 4.176 23 C -0.093 4.093 24 C -0.187 4.187 25 C 0.083 3.917 26 N -0.276 5.276 27 H 0.249 0.751 28 C 0.333 3.667 29 O -0.376 6.376 30 H 0.069 0.931 31 H 0.008 0.992 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.211 0.789 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.548 -20.131 -0.169 22.281 hybrid contribution -0.017 0.962 -0.125 0.971 sum 9.532 -19.169 -0.294 21.410 Atomic orbital electron populations 1.69942 1.05966 1.26672 1.51701 1.24933 0.94798 0.99130 0.95624 0.86580 0.79389 0.82791 0.78790 1.20264 1.21558 1.20260 1.21193 0.93965 0.89588 1.49087 0.91318 1.19885 0.90137 0.87061 0.96327 1.62086 1.29630 1.03567 1.29372 1.20530 0.98182 0.95422 0.86464 1.22254 0.89276 1.02554 0.88923 1.21555 0.99148 1.07123 0.94665 1.21723 0.98274 1.07032 0.95886 1.23813 0.92436 1.06706 0.89576 1.83987 1.41251 1.67422 1.14108 1.20789 0.91101 0.98454 0.91028 1.21109 0.95972 0.95364 1.02047 1.22496 0.97210 0.91916 0.95332 1.18655 0.92686 0.94462 1.06465 1.20858 0.99092 0.91163 0.96620 1.20759 0.93505 1.00119 1.03187 1.21035 0.97589 0.94390 0.96246 1.20715 0.97947 0.93541 1.06509 1.17988 0.94430 0.83690 0.95630 1.43573 1.16746 1.06102 1.61202 0.75065 1.16935 0.84226 0.86164 0.79338 1.91029 1.82135 1.14895 1.49533 0.93085 0.99158 0.93728 0.92402 0.90510 0.83769 0.84078 0.78893 0.94319 0.87582 0.84130 0.84996 0.85672 0.85512 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 23.03 29.54 -169.99 -5.02 18.01 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.50 -14.70 8.56 -34.44 -0.29 -14.99 16 8 H 0.07 2.10 7.53 -52.49 -0.40 1.71 16 9 C 0.19 4.99 4.58 -4.98 -0.02 4.97 16 10 N -0.52 -11.50 4.38 -238.96 -1.05 -12.55 16 11 C 0.12 2.24 5.35 -4.98 -0.03 2.21 16 12 C 0.02 0.41 6.32 -35.63 -0.23 0.18 16 13 C -0.20 -3.91 9.49 -39.70 -0.38 -4.29 16 14 C -0.21 -3.55 10.91 -39.70 -0.43 -3.98 16 15 C -0.06 -0.93 12.09 29.41 0.36 -0.58 16 16 O -0.17 -3.32 10.65 5.71 0.06 -3.26 16 17 C 0.11 2.21 4.64 -4.97 -0.02 2.19 16 18 C -0.14 -2.34 4.83 -104.46 -0.50 -2.85 16 19 C -0.05 -0.61 7.99 -37.24 -0.30 -0.91 16 20 C -0.12 -1.37 5.87 -105.04 -0.62 -1.99 16 21 C -0.06 -0.51 9.79 -39.56 -0.39 -0.90 16 22 C -0.16 -1.18 9.97 -39.95 -0.40 -1.58 16 23 C -0.07 -0.55 10.01 -39.52 -0.40 -0.95 16 24 C -0.17 -1.47 9.92 -39.41 -0.39 -1.86 16 25 C 0.19 2.16 6.65 -83.88 -0.56 1.60 16 26 N -0.64 -8.60 5.30 -12.61 -0.07 -8.66 16 27 H 0.41 4.65 8.77 -40.82 -0.36 4.29 16 28 C 0.54 9.61 7.65 -15.30 -0.12 9.50 16 29 O -0.50 -11.19 17.00 5.03 0.09 -11.10 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H -0.01 -0.25 8.03 -51.93 -0.42 -0.67 16 32 H 0.04 1.25 6.13 -51.93 -0.32 0.93 16 33 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 34 H 0.08 1.23 5.54 -51.93 -0.29 0.95 16 35 H 0.14 2.70 8.05 -52.49 -0.42 2.27 16 36 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 37 H 0.19 2.27 8.06 -52.49 -0.42 1.84 16 38 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 39 H 0.11 2.39 6.72 -51.93 -0.35 2.04 16 40 H 0.14 1.42 7.98 -52.49 -0.42 1.01 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -36.36 373.02 -9.91 -46.27 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.47 Total: 4.98 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -4.81 Total: -12.67 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.38 Total: -47.85 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.15 Total: -14.36 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.36 -9.91 -46.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.485 kcal (2) G-P(sol) polarization free energy of solvation -36.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds