Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 120.00188 * 2 1 4 4 C 1.38237 * 120.00458 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99749 * 359.76683 * 4 3 2 6 6 C 1.38239 * 119.99781 * 0.46461 * 5 4 3 7 7 C 1.50700 * 119.99869 * 179.78606 * 6 5 4 8 8 N 1.46903 * 109.47345 * 39.72667 * 7 6 5 9 9 C 1.46898 * 110.99697 * 84.99678 * 8 7 6 10 10 C 1.50699 * 109.46937 * 180.02562 * 9 8 7 11 11 O 1.21295 * 120.00037 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99955 * 180.02562 * 10 9 8 13 13 C 1.37095 * 119.99975 * 180.02562 * 12 10 9 14 14 H 1.08007 * 120.00123 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00342 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99442 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00343 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47050 * 60.00172 * 17 15 13 19 19 H 1.48501 * 109.47180 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47169 * 300.00147 * 17 15 13 21 21 C 1.50706 * 109.47299 * 279.72685 * 7 6 5 22 22 C 1.38240 * 119.99758 * 79.95071 * 21 7 6 23 23 C 1.38234 * 119.99686 * 179.97438 * 22 21 7 24 24 C 1.38234 * 120.00244 * 0.07174 * 23 22 21 25 25 C 1.38230 * 119.99864 * 359.95693 * 24 23 22 26 26 C 1.50701 * 119.99847 * 180.02562 * 25 24 23 27 27 C 1.38234 * 120.00178 * 260.00268 * 21 7 6 28 28 C 1.38231 * 120.00276 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47030 * 270.02049 * 1 2 3 30 30 H 1.08993 * 109.46922 * 30.02710 * 1 2 3 31 31 H 1.09003 * 109.46710 * 150.02022 * 1 2 3 32 32 H 1.08001 * 119.99631 * 359.97438 * 3 2 1 33 33 H 1.07994 * 120.00032 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.00324 * 180.25568 * 5 4 3 35 35 H 1.08999 * 109.47580 * 159.72833 * 7 6 5 36 36 H 1.00903 * 110.99560 * 321.04809 * 8 7 6 37 37 H 1.08996 * 109.47574 * 300.00300 * 9 8 7 38 38 H 1.09007 * 109.47008 * 60.00779 * 9 8 7 39 39 H 0.96994 * 120.00137 * 0.02562 * 12 10 9 40 40 H 0.97008 * 119.99562 * 179.97438 * 16 15 13 41 41 H 1.08005 * 120.00102 * 0.04952 * 22 21 7 42 42 H 1.07999 * 119.99747 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 44 44 H 1.08999 * 109.46988 * 270.01830 * 26 25 24 45 45 H 1.08990 * 109.47415 * 30.02080 * 26 25 24 46 46 H 1.09006 * 109.46768 * 150.01979 * 26 25 24 47 47 H 1.08000 * 119.99516 * 0.27002 * 27 21 7 48 48 H 1.08007 * 120.00223 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2718 0.0001 0.0059 6 6 3.5806 -1.1971 0.0011 7 6 4.3341 -2.5022 0.0021 8 7 5.4977 -2.3951 0.8924 9 6 5.1242 -2.6821 2.2838 10 6 6.3405 -2.5622 3.1653 11 8 7.4130 -2.2663 2.6821 12 7 6.2366 -2.7838 4.4907 13 6 7.3430 -2.6742 5.2928 14 1 8.2978 -2.4099 4.8627 15 6 7.2362 -2.9032 6.6591 16 7 6.0744 -3.2243 7.1825 17 14 8.7438 -2.7545 7.7519 18 1 9.2872 -1.3756 7.6607 19 1 8.3664 -3.0452 9.1584 20 1 9.7763 -3.7239 7.3054 21 6 4.7990 -2.8150 -1.3969 22 6 5.9296 -2.2012 -1.9029 23 6 6.3564 -2.4885 -3.1859 24 6 5.6518 -3.3884 -3.9635 25 6 4.5209 -4.0016 -3.4577 26 6 3.7531 -4.9831 -4.3052 27 6 4.0943 -3.7147 -2.1745 28 6 2.1982 -1.1971 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.3517 0.0000 0.0105 35 1 3.6795 -3.2995 0.3541 36 1 5.9305 -1.4870 0.8141 37 1 4.3670 -1.9697 2.6111 38 1 4.7244 -3.6940 2.3513 39 1 5.3791 -3.0208 4.8771 40 1 5.9998 -3.3845 8.1364 41 1 6.4802 -1.4982 -1.2953 42 1 7.2399 -2.0093 -3.5811 43 1 5.9850 -3.6125 -4.9661 44 1 2.9894 -4.4525 -4.8738 45 1 4.4363 -5.4823 -4.9922 46 1 3.2782 -5.7244 -3.6624 47 1 3.2081 -4.1903 -1.7810 48 1 1.6583 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084494316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = 5.215558 kcal Electronic energy + Delta-G solvation = -28331.789273 eV Core-core repulsion = 24543.673576 eV Total energy + Delta-G solvation = -3788.115697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.26737 -38.94900 -38.17817 -36.08290 -33.90912 -32.62400 -32.58878 -31.73804 -31.14432 -30.52992 -27.60424 -26.82377 -26.71146 -25.08901 -23.56633 -22.37085 -22.23673 -21.15328 -19.57549 -19.25425 -17.90405 -17.05121 -16.52435 -15.96355 -15.84414 -15.27444 -15.04267 -14.94101 -14.49189 -14.39914 -14.07696 -13.97894 -13.83582 -13.58256 -13.42061 -13.27870 -13.11921 -12.94574 -12.57976 -12.37010 -12.24461 -12.16579 -11.93404 -11.84262 -11.66379 -11.52185 -11.23660 -11.04086 -11.01316 -10.90996 -10.85944 -10.42964 -10.19637 -9.48195 -8.90582 -8.76874 -8.67821 -8.49898 -8.42890 -8.08160 -7.94138 -6.39732 -3.80436 1.21286 1.33277 1.46622 1.50460 3.21491 3.26890 3.31429 3.66370 3.80441 3.93312 4.09907 4.31426 4.67487 4.73141 4.81800 4.83537 4.86509 4.99800 5.04504 5.14622 5.20053 5.21549 5.25117 5.28260 5.33635 5.42612 5.43709 5.46205 5.57191 5.59770 5.65951 5.71331 5.73715 5.84329 5.94871 6.00420 6.03432 6.08245 6.16257 6.26287 6.41555 6.46881 6.51615 6.55659 6.59419 6.68172 6.94804 7.07119 7.22578 7.56831 7.60696 8.07913 8.63324 9.19663 9.56353 10.07856 10.78000 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.009798 B = 0.002997 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.144453 B = 9339.715456 C =11056.843388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.124 4.124 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.099 4.099 7 C 0.163 3.837 8 N -0.653 5.653 9 C 0.050 3.950 10 C 0.442 3.558 11 O -0.583 6.583 12 N -0.563 5.563 13 C -0.299 4.299 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.051 4.051 22 C -0.095 4.095 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.092 4.092 26 C -0.111 4.111 27 C -0.114 4.114 28 C -0.110 4.110 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.350 0.650 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.118 0.882 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.037 3.268 -19.768 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.129 4.129 5 C -0.135 4.135 6 C -0.101 4.101 7 C 0.053 3.947 8 N -0.286 5.286 9 C -0.083 4.083 10 C 0.228 3.772 11 O -0.468 6.468 12 N -0.199 5.199 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.052 4.052 22 C -0.114 4.114 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.092 4.092 26 C -0.168 4.168 27 C -0.132 4.132 28 C -0.129 4.129 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.173 0.827 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.136 0.864 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.117 2.775 -19.977 23.030 hybrid contribution -0.234 0.752 1.204 1.438 sum -11.351 3.527 -18.773 22.220 Atomic orbital electron populations 1.20780 0.91297 1.02566 1.02345 1.19886 0.95955 0.93165 0.99689 1.21007 0.94262 0.97404 1.01567 1.21090 0.94266 0.97910 0.99584 1.20965 1.00036 0.92093 1.00422 1.20597 0.94216 0.95775 0.99525 1.19469 0.90883 0.93626 0.90743 1.60358 1.24758 1.38117 1.05333 1.21715 0.96650 1.01612 0.88308 1.19760 0.89753 0.84665 0.83041 1.90519 1.29086 1.53112 1.74042 1.41838 1.11838 1.60905 1.05364 1.19653 0.90314 1.44355 0.88562 0.87983 1.25254 0.98112 0.97187 0.97356 1.69609 1.23722 1.47475 1.13543 0.85923 0.80974 0.78983 0.78374 1.19936 1.20986 1.19868 1.19563 0.95324 0.96168 0.94156 1.20936 0.95849 0.99614 0.94976 1.21103 0.99689 0.98328 0.94476 1.20953 0.95805 0.98010 0.99667 1.19791 0.96272 0.98334 0.94766 1.20755 0.99572 0.97459 0.99036 1.20796 0.99932 0.98619 0.93874 1.20877 0.93303 0.97582 1.01125 0.91143 0.91708 0.91621 0.86316 0.86012 0.85989 0.88858 0.82729 0.93635 0.89494 0.77466 0.91844 0.86060 0.86262 0.86568 0.91507 0.91759 0.91662 0.86417 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 4 C -0.11 -1.30 10.05 -39.58 -0.40 -1.69 16 5 C -0.12 -1.52 8.93 -39.58 -0.35 -1.87 16 6 C -0.10 -1.28 4.70 -104.62 -0.49 -1.77 16 7 C 0.16 2.21 2.43 -70.01 -0.17 2.04 16 8 N -0.65 -10.90 5.31 -110.45 -0.59 -11.48 16 9 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 10 C 0.44 10.62 7.82 -10.98 -0.09 10.54 16 11 O -0.58 -15.99 15.78 5.54 0.09 -15.90 16 12 N -0.56 -14.49 5.29 -10.96 -0.06 -14.54 16 13 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 14 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 17 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.05 -0.69 4.94 -104.62 -0.52 -1.20 16 22 C -0.10 -1.28 9.13 -39.58 -0.36 -1.65 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.13 -1.40 9.70 -39.59 -0.38 -1.79 16 25 C -0.09 -1.01 5.88 -104.63 -0.62 -1.63 16 26 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 27 C -0.11 -1.36 9.32 -39.58 -0.37 -1.73 16 28 C -0.11 -1.29 9.33 -39.58 -0.37 -1.66 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.58 6.06 -52.49 -0.32 1.26 16 35 H 0.09 1.19 7.52 -51.93 -0.39 0.80 16 36 H 0.35 6.00 5.39 -39.29 -0.21 5.79 16 37 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 38 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 39 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.12 1.65 6.82 -52.48 -0.36 1.29 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 46 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 47 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 48 H 0.12 1.20 8.04 -52.48 -0.42 0.78 16 LS Contribution 401.46 15.07 6.05 6.05 Total: -1.00 -32.23 401.46 -10.87 -43.11 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -7.00 Total: 16.42 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -5.06 Total: -15.84 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.08 Total: -50.09 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.09 Total: -15.90 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.23 -10.87 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084494316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.321 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds