Wall clock time and date at job start Tue Mar 31 2020 07:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47533 * 2 1 4 4 C 1.52998 * 109.47261 * 120.00148 * 2 1 3 5 5 C 1.53004 * 109.47283 * 174.99917 * 4 2 1 6 6 H 1.09002 * 109.47369 * 54.99995 * 5 4 2 7 7 O 1.45205 * 109.47064 * 294.99835 * 5 4 2 8 8 C 1.34703 * 116.99662 * 90.00040 * 7 5 4 9 9 O 1.21467 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.47766 * 119.99754 * 179.97438 * 8 7 5 11 11 C 1.39969 * 120.03068 * 359.72463 * 10 8 7 12 12 C 1.38318 * 120.35240 * 179.76726 * 11 10 8 13 13 C 1.37764 * 120.41705 * 0.50806 * 12 11 10 14 14 C 1.40746 * 120.05021 * 359.74771 * 13 12 11 15 15 C 1.41449 * 120.17434 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99500 * 334.92022 * 15 14 13 17 17 C 1.39938 * 119.99750 * 154.92831 * 15 14 13 18 18 N 1.30830 * 120.00159 * 342.57930 * 17 15 14 19 19 Si 1.86800 * 119.99515 * 162.58602 * 17 15 14 20 20 H 1.48493 * 109.47337 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46793 * 119.99568 * 19 17 15 22 22 H 1.48500 * 109.47017 * 239.98984 * 19 17 15 23 23 C 1.39050 * 120.03369 * 179.97438 * 10 8 7 24 24 C 1.50698 * 109.47152 * 175.00172 * 5 4 2 25 25 C 1.38228 * 119.62032 * 125.00264 * 24 5 4 26 26 C 1.38633 * 119.15916 * 180.02562 * 25 24 5 27 27 C 1.38672 * 118.42346 * 359.97438 * 26 25 24 28 28 C 1.38186 * 119.16234 * 0.27513 * 27 26 25 29 29 N 1.31863 * 119.61599 * 305.02009 * 24 5 4 30 30 H 1.08999 * 109.46751 * 300.00071 * 1 2 3 31 31 H 1.08995 * 109.46953 * 59.99847 * 1 2 3 32 32 H 1.08992 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47395 * 239.99924 * 2 1 3 34 34 H 1.08997 * 109.46775 * 59.99816 * 3 2 1 35 35 H 1.08998 * 109.47207 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46657 * 300.00258 * 3 2 1 37 37 H 1.08998 * 109.47139 * 55.00182 * 4 2 1 38 38 H 1.09000 * 109.47264 * 294.99716 * 4 2 1 39 39 H 1.08000 * 119.82593 * 359.97438 * 11 10 8 40 40 H 1.07993 * 119.79078 * 180.25797 * 12 11 10 41 41 H 1.07997 * 119.97329 * 179.77144 * 13 12 11 42 42 H 0.96994 * 119.99514 * 180.02562 * 18 17 15 43 43 H 1.08011 * 120.20211 * 359.95720 * 23 10 8 44 44 H 1.08001 * 120.41733 * 0.04000 * 25 24 5 45 45 H 1.07999 * 120.78326 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.41776 * 180.02562 * 27 26 25 47 47 H 1.07998 * 119.61600 * 179.70545 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 1 3.9955 0.1611 1.0527 7 8 3.9445 -1.6797 0.0725 8 6 4.1448 -1.0757 -1.1148 9 8 4.0065 0.1268 -1.2155 10 6 4.5338 -1.8761 -2.2944 11 6 4.7000 -3.2610 -2.1775 12 6 5.0594 -4.0172 -3.2785 13 6 5.2680 -3.4154 -4.5000 14 6 5.1109 -2.0234 -4.6359 15 6 5.3240 -1.4028 -5.8890 16 1 5.9713 -1.8670 -6.6183 17 6 4.6962 -0.1873 -6.1836 18 7 3.6695 0.2072 -5.4752 19 14 5.3241 0.8717 -7.5885 20 1 6.4877 0.2067 -8.2279 21 1 4.2445 1.0537 -8.5919 22 1 5.7392 2.1968 -7.0622 23 6 4.7403 -1.2535 -3.5205 24 6 4.0773 -1.4303 2.4721 25 6 4.8749 -2.5585 2.4291 26 6 5.3407 -3.1021 3.6163 27 6 4.9857 -2.4877 4.8077 28 6 4.1804 -1.3653 4.7726 29 7 3.7594 -0.8726 3.6239 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6054 -1.7198 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 4.5436 -3.7421 -1.2234 40 1 5.1810 -5.0856 -3.1790 41 1 5.5520 -4.0123 -5.3541 42 1 3.2341 1.0495 -5.6797 43 1 4.6165 -0.1847 -3.6148 44 1 5.1321 -3.0105 1.4826 45 1 5.9659 -3.9827 3.6132 46 1 5.3308 -2.8838 5.7513 47 1 3.8955 -0.8837 5.6964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084509966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:54 Heat of formation + Delta-G solvation = -45.690116 kcal Electronic energy + Delta-G solvation = -29382.067249 eV Core-core repulsion = 25494.025455 eV Total energy + Delta-G solvation = -3888.041795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 12.87 seconds Orbital eigenvalues (eV) -40.71227 -39.73106 -37.57488 -36.28560 -35.42217 -33.77498 -32.79596 -32.04697 -30.34897 -29.54521 -28.76914 -26.82099 -25.47002 -24.83094 -23.63331 -23.13166 -21.36130 -21.01274 -19.79359 -19.67584 -17.96789 -17.30269 -16.60265 -16.23137 -15.94950 -15.75181 -15.48098 -14.92134 -14.64310 -14.39651 -14.22736 -13.88921 -13.46503 -13.41777 -13.17179 -13.10740 -12.77728 -12.60189 -12.48357 -12.16888 -11.84605 -11.74621 -11.59655 -11.38628 -11.24304 -11.15402 -10.89596 -10.79415 -10.53535 -10.42710 -10.36877 -10.12698 -10.10219 -9.93279 -9.75982 -9.48455 -9.41580 -9.27767 -9.00841 -7.77708 -7.58923 -6.85829 -4.47011 0.97495 1.17370 1.94805 2.74182 2.98376 3.05223 3.08975 3.10901 3.56133 3.66703 3.88045 4.23654 4.54876 4.59817 4.72090 4.96115 5.01652 5.05903 5.13518 5.17539 5.35830 5.43953 5.50567 5.58747 5.66975 5.70722 5.87442 5.92470 6.00160 6.02617 6.07835 6.11334 6.13822 6.19353 6.30898 6.35175 6.49025 6.56899 6.62545 6.68736 6.81236 6.90901 6.92158 6.98794 7.13903 7.27726 7.64149 7.72006 7.84064 7.87511 8.07058 8.41156 8.55482 8.73537 8.75921 10.09359 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.003284 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.095192 B = 8524.765844 C = 9753.533551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.116 4.116 5 C 0.138 3.862 6 H 0.106 0.894 7 O -0.350 6.350 8 C 0.512 3.488 9 O -0.502 6.502 10 C -0.114 4.114 11 C -0.196 4.196 12 C -0.103 4.103 13 C -0.202 4.202 14 C 0.096 3.904 15 C -0.460 4.460 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.785 5.785 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.087 4.087 24 C 0.132 3.868 25 C -0.149 4.149 26 C -0.076 4.076 27 C -0.179 4.179 28 C 0.098 3.902 29 N -0.477 5.477 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.284 0.716 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -2.630 15.408 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.154 4.154 5 C 0.082 3.918 6 H 0.123 0.877 7 O -0.267 6.267 8 C 0.359 3.641 9 O -0.391 6.391 10 C -0.115 4.115 11 C -0.215 4.215 12 C -0.121 4.121 13 C -0.222 4.222 14 C 0.093 3.907 15 C -0.488 4.488 16 H 0.100 0.900 17 C -0.145 4.145 18 N -0.409 5.409 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.196 1.196 23 C -0.107 4.107 24 C -0.005 4.005 25 C -0.169 4.169 26 C -0.102 4.102 27 C -0.199 4.199 28 C -0.059 4.059 29 N -0.187 5.187 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.154 0.846 44 H 0.165 0.835 45 H 0.153 0.847 46 H 0.151 0.849 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.607 -1.319 15.403 15.542 hybrid contribution 0.653 -0.273 -0.487 0.860 sum -0.953 -1.593 14.915 15.030 Atomic orbital electron populations 1.21799 0.95510 1.01268 1.01422 1.21153 0.95327 0.97319 0.97886 1.21935 1.03134 0.94837 1.00287 1.21984 0.92248 1.01524 0.99622 1.21144 0.95819 0.94108 0.80743 0.87697 1.86581 1.80318 1.41454 1.18361 1.21842 0.72893 0.86949 0.82434 1.90750 1.48235 1.15635 1.84526 1.18815 1.08897 0.93320 0.90464 1.20545 1.10386 0.92515 0.98097 1.20501 1.00723 0.97591 0.93329 1.21185 1.10045 0.94568 0.96402 1.17545 0.89670 0.90657 0.92785 1.19599 1.25134 1.04095 1.00022 0.89956 1.25951 0.93223 0.97669 0.97695 1.69778 1.14319 1.20496 1.36347 0.86237 0.79914 0.79920 0.80585 1.18331 1.19900 1.19554 1.21651 0.99144 1.00820 0.89039 1.20862 0.94179 0.92739 0.92761 1.22094 0.97882 0.96770 1.00132 1.21644 0.97308 0.99030 0.92201 1.22139 1.00533 0.98012 0.99194 1.22676 0.94114 0.93458 0.95646 1.67236 1.22136 1.31532 0.97775 0.93096 0.92614 0.93089 0.90724 0.94041 0.90407 0.93034 0.91424 0.89510 0.88024 0.88621 0.88399 0.90471 0.84632 0.83483 0.84685 0.84887 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 37.15 0.34 -1.62 16 2 C -0.10 -1.58 2.39 -90.62 -0.22 -1.79 16 3 C -0.15 -2.33 8.12 37.16 0.30 -2.03 16 4 C -0.12 -1.71 4.32 -26.73 -0.12 -1.83 16 5 C 0.14 2.19 2.67 -27.88 -0.07 2.12 16 6 H 0.11 1.79 5.66 -51.93 -0.29 1.50 16 7 O -0.35 -6.29 7.51 -40.50 -0.30 -6.59 16 8 C 0.51 10.77 6.31 34.63 0.22 10.99 16 9 O -0.50 -11.14 11.20 -19.24 -0.22 -11.35 16 10 C -0.11 -2.62 5.87 -105.05 -0.62 -3.23 16 11 C -0.20 -4.14 9.62 -38.90 -0.37 -4.51 16 12 C -0.10 -2.16 10.01 -39.73 -0.40 -2.56 16 13 C -0.20 -4.66 9.78 -38.81 -0.38 -5.04 16 14 C 0.10 2.45 5.57 -106.87 -0.59 1.85 16 15 C -0.46 -11.70 9.05 -37.72 -0.34 -12.04 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 17 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 18 N -0.78 -20.06 10.97 55.55 0.61 -19.45 16 19 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.09 -2.22 8.23 -38.43 -0.32 -2.54 16 24 C 0.13 1.90 6.18 -82.58 -0.51 1.39 16 25 C -0.15 -1.94 9.42 -39.44 -0.37 -2.32 16 26 C -0.08 -0.78 10.18 -39.28 -0.40 -1.18 16 27 C -0.18 -1.63 10.11 -39.44 -0.40 -2.03 16 28 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 29 N -0.48 -6.41 9.78 -9.47 -0.09 -6.50 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.44 5.62 -51.93 -0.29 1.15 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.39 4.43 -51.93 -0.23 1.16 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.20 7.80 -51.93 -0.41 0.80 16 39 H 0.10 1.91 7.59 -52.49 -0.40 1.51 16 40 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 43 H 0.14 3.70 5.76 -52.48 -0.30 3.40 16 44 H 0.15 1.97 7.00 -52.49 -0.37 1.60 16 45 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -27.57 382.91 -10.28 -37.86 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.49 Total: 10.80 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -4.53 Total: -23.83 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.52 Total: -25.95 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.52 Total: -17.94 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.57 -10.28 -37.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084509966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.833 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.87 seconds