Wall clock time and date at job start Tue Mar 31 2020 07:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47214 * 2 1 4 4 C 1.53001 * 109.47316 * 119.99854 * 2 1 3 5 5 C 1.53002 * 109.47104 * 174.54016 * 4 2 1 6 6 H 1.09007 * 109.46619 * 56.72384 * 5 4 2 7 7 O 1.45202 * 109.47104 * 176.71429 * 5 4 2 8 8 C 1.34705 * 117.00381 * 272.44787 * 7 5 4 9 9 O 1.21460 * 119.99933 * 4.80600 * 8 7 5 10 10 C 1.47768 * 119.99990 * 184.80350 * 8 7 5 11 11 C 1.39972 * 120.02730 * 359.72166 * 10 8 7 12 12 C 1.38322 * 120.34769 * 179.75968 * 11 10 8 13 13 C 1.37754 * 120.41941 * 0.52414 * 12 11 10 14 14 C 1.40756 * 120.05102 * 359.73572 * 13 12 11 15 15 C 1.41441 * 120.17515 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99686 * 28.32711 * 15 14 13 17 17 C 1.39935 * 119.99847 * 208.31873 * 15 14 13 18 18 N 1.30825 * 119.99893 * 14.40713 * 17 15 14 19 19 Si 1.86800 * 119.99812 * 194.39848 * 17 15 14 20 20 H 1.48502 * 109.47052 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46927 * 120.00436 * 19 17 15 22 22 H 1.48502 * 109.47456 * 240.00492 * 19 17 15 23 23 C 1.39047 * 120.03122 * 180.02562 * 10 8 7 24 24 C 1.50693 * 109.47833 * 296.72298 * 5 4 2 25 25 C 1.38220 * 119.62271 * 124.72279 * 24 5 4 26 26 C 1.38630 * 119.16114 * 179.75334 * 25 24 5 27 27 C 1.38671 * 118.42231 * 0.51762 * 26 25 24 28 28 C 1.38176 * 119.16127 * 359.72281 * 27 26 25 29 29 N 1.31855 * 119.61236 * 305.00072 * 24 5 4 30 30 H 1.08999 * 109.47014 * 299.99779 * 1 2 3 31 31 H 1.09000 * 109.47407 * 59.99655 * 1 2 3 32 32 H 1.09004 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47014 * 240.00221 * 2 1 3 34 34 H 1.08999 * 109.47030 * 299.89496 * 3 2 1 35 35 H 1.08996 * 109.46722 * 59.89346 * 3 2 1 36 36 H 1.09000 * 109.47460 * 179.89427 * 3 2 1 37 37 H 1.09008 * 109.46763 * 54.54633 * 4 2 1 38 38 H 1.08997 * 109.47390 * 294.54498 * 4 2 1 39 39 H 1.08003 * 119.82909 * 0.02562 * 11 10 8 40 40 H 1.08004 * 119.78849 * 180.25825 * 12 11 10 41 41 H 1.08002 * 119.97707 * 179.75493 * 13 12 11 42 42 H 0.97006 * 119.99744 * 179.97438 * 18 17 15 43 43 H 1.07999 * 120.20195 * 359.94280 * 23 10 8 44 44 H 1.08000 * 120.42172 * 359.97438 * 25 24 5 45 45 H 1.08001 * 120.78869 * 180.26056 * 26 25 24 46 46 H 1.07999 * 120.42007 * 179.70681 * 27 26 25 47 47 H 1.08006 * 119.62144 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5639 -0.8411 1.1825 6 1 4.0019 0.1511 1.0736 7 8 4.0550 -1.4556 2.4030 8 6 4.3211 -0.6344 3.4370 9 8 4.0659 0.5501 3.3531 10 6 4.9234 -1.1746 4.6735 11 6 5.2123 -2.5406 4.7731 12 6 5.7808 -3.0525 5.9255 13 6 6.0592 -2.2265 6.9922 14 6 5.7707 -0.8511 6.9128 15 6 6.0560 -0.0006 8.0063 16 1 6.8619 -0.2432 8.6831 17 6 5.2942 1.1552 8.2110 18 7 4.1584 1.3102 7.5805 19 14 5.8989 2.4767 9.3847 20 1 7.2013 2.0636 9.9665 21 1 6.0698 3.7538 8.6464 22 1 4.9067 2.6634 10.4737 23 6 5.1979 -0.3276 5.7415 24 6 3.9496 -1.6929 0.0007 25 6 4.8241 -1.1927 -0.9456 26 6 5.1764 -1.9864 -2.0262 27 6 4.6250 -3.2553 -2.1207 28 6 3.7535 -3.6855 -1.1386 29 7 3.4446 -2.9048 -0.1214 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6782 1.9558 -0.8909 35 1 1.6751 1.9568 0.8890 36 1 3.1300 1.4426 0.0019 37 1 1.5991 -1.7169 1.2994 38 1 1.7587 -0.1541 2.1365 39 1 4.9942 -3.1976 3.9441 40 1 6.0038 -4.1072 5.9910 41 1 6.4994 -2.6345 7.8901 42 1 3.6301 2.1113 7.7227 43 1 4.9731 0.7264 5.6707 44 1 5.2305 -0.1974 -0.8427 45 1 5.8607 -1.6236 -2.7788 46 1 4.8735 -3.8990 -2.9516 47 1 3.3200 -4.6726 -1.2046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084509969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:15 Heat of formation + Delta-G solvation = -50.637529 kcal Electronic energy + Delta-G solvation = -28912.170163 eV Core-core repulsion = 25023.913832 eV Total energy + Delta-G solvation = -3888.256331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 10.65 seconds Orbital eigenvalues (eV) -40.68318 -39.59515 -37.54016 -36.68383 -35.44019 -33.71210 -32.69210 -32.15572 -30.32801 -29.51424 -28.80433 -27.21057 -25.41121 -24.79281 -23.70478 -23.22149 -21.56609 -20.96425 -19.95483 -19.61465 -17.88838 -17.21980 -16.71010 -16.14679 -16.03827 -15.59439 -15.41459 -14.96324 -14.82078 -14.59869 -14.07751 -13.88985 -13.78542 -13.45623 -13.34470 -13.21596 -12.85412 -12.57698 -12.44780 -12.25260 -12.11117 -11.83599 -11.68047 -11.41527 -11.27871 -11.16035 -11.08536 -10.74640 -10.67829 -10.55708 -10.50462 -10.18438 -10.13090 -10.03386 -9.70674 -9.59455 -9.38910 -9.26178 -9.16945 -7.73663 -7.51507 -6.78829 -4.43658 0.86853 1.12810 1.98232 2.78074 3.07936 3.11365 3.13161 3.14084 3.59714 3.78198 3.92287 4.10330 4.52135 4.60760 4.66249 4.77911 4.88395 4.90011 4.91320 4.98908 5.15970 5.36478 5.42315 5.52867 5.53707 5.58278 5.61663 5.70722 5.77427 5.85583 5.89217 5.96668 6.03008 6.05477 6.14427 6.18407 6.33642 6.37387 6.41886 6.54172 6.64781 6.93903 6.95868 7.00254 7.18516 7.31663 7.68739 7.75494 7.88710 7.91241 8.10903 8.45375 8.56592 8.77901 8.80823 10.17302 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.002994 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.747254 B = 9348.843534 C =10570.420047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.126 4.126 5 C 0.142 3.858 6 H 0.096 0.904 7 O -0.340 6.340 8 C 0.511 3.489 9 O -0.516 6.516 10 C -0.116 4.116 11 C -0.187 4.187 12 C -0.106 4.106 13 C -0.197 4.197 14 C 0.096 3.904 15 C -0.463 4.463 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.792 5.792 19 Si 0.911 3.089 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.083 4.083 24 C 0.139 3.861 25 C -0.158 4.158 26 C -0.076 4.076 27 C -0.174 4.174 28 C 0.099 3.901 29 N -0.456 5.456 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.283 0.717 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -3.694 -18.147 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.164 4.164 5 C 0.086 3.914 6 H 0.113 0.887 7 O -0.257 6.257 8 C 0.358 3.642 9 O -0.405 6.405 10 C -0.118 4.118 11 C -0.207 4.207 12 C -0.125 4.125 13 C -0.217 4.217 14 C 0.093 3.907 15 C -0.492 4.492 16 H 0.100 0.900 17 C -0.145 4.145 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.184 1.184 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.103 4.103 24 C 0.001 3.999 25 C -0.178 4.178 26 C -0.102 4.102 27 C -0.193 4.193 28 C -0.059 4.059 29 N -0.165 5.165 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.278 -3.468 -17.562 18.199 hybrid contribution 0.718 0.930 -0.246 1.200 sum -2.560 -2.538 -17.808 18.169 Atomic orbital electron populations 1.21799 0.94870 1.01748 1.01726 1.21009 0.96052 0.96203 0.97572 1.21922 1.01123 0.95842 1.01914 1.22012 0.93105 1.02349 0.98955 1.21383 0.95395 0.94585 0.80047 0.88673 1.86737 1.76741 1.40872 1.21315 1.21921 0.74482 0.84290 0.83471 1.90748 1.50503 1.17330 1.81925 1.18844 1.06620 0.95077 0.91235 1.20615 1.07565 0.93650 0.98846 1.20523 1.00180 0.97827 0.93941 1.21240 1.08722 0.93591 0.98109 1.17547 0.90033 0.91166 0.91906 1.19566 1.14943 1.04896 1.09843 0.90004 1.25931 0.93702 0.98683 0.96230 1.69773 1.09307 1.26645 1.36022 0.86217 0.79961 0.80333 0.79972 1.18393 1.19648 1.19938 1.21623 0.98897 0.99644 0.90090 1.20854 0.93085 0.91531 0.94423 1.21984 0.98471 1.01727 0.95652 1.21548 0.97702 0.93789 0.97132 1.22175 0.99220 0.97091 1.00862 1.22824 0.94611 0.99118 0.89312 1.67476 1.22852 1.04117 1.22064 0.92411 0.92832 0.92660 0.91704 0.92880 0.92029 0.92667 0.89892 0.90413 0.87821 0.88525 0.88297 0.90582 0.84825 0.84679 0.84670 0.84776 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 2 C -0.09 -1.08 2.80 -90.62 -0.25 -1.33 16 3 C -0.15 -1.75 8.96 37.16 0.33 -1.42 16 4 C -0.13 -1.89 4.40 -26.73 -0.12 -2.01 16 5 C 0.14 2.29 2.15 -27.89 -0.06 2.23 16 6 H 0.10 1.53 5.34 -51.93 -0.28 1.25 16 7 O -0.34 -6.77 9.11 -40.51 -0.37 -7.14 16 8 C 0.51 11.62 7.83 34.63 0.27 11.89 16 9 O -0.52 -12.36 15.61 -19.24 -0.30 -12.66 16 10 C -0.12 -2.85 5.87 -105.05 -0.62 -3.46 16 11 C -0.19 -4.24 9.62 -38.90 -0.37 -4.61 16 12 C -0.11 -2.34 10.01 -39.73 -0.40 -2.74 16 13 C -0.20 -4.68 9.78 -38.81 -0.38 -5.06 16 14 C 0.10 2.52 5.54 -106.87 -0.59 1.93 16 15 C -0.46 -12.08 9.05 -37.73 -0.34 -12.42 16 16 H 0.08 2.03 7.89 -52.49 -0.41 1.62 16 17 C 0.07 1.82 5.18 -17.35 -0.09 1.73 16 18 N -0.79 -20.85 11.01 55.55 0.61 -20.24 16 19 Si 0.91 18.70 29.58 -169.99 -5.03 13.67 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.08 -2.21 8.20 -38.43 -0.32 -2.52 16 24 C 0.14 1.96 4.63 -82.59 -0.38 1.58 16 25 C -0.16 -1.82 9.71 -39.44 -0.38 -2.20 16 26 C -0.08 -0.69 10.18 -39.28 -0.40 -1.09 16 27 C -0.17 -1.52 10.11 -39.44 -0.40 -1.91 16 28 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 29 N -0.46 -6.42 9.82 -9.47 -0.09 -6.52 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.77 7.15 -51.93 -0.37 0.40 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.65 6.51 -51.93 -0.34 0.31 16 37 H 0.08 1.27 7.85 -51.92 -0.41 0.87 16 38 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 39 H 0.10 2.18 7.59 -52.48 -0.40 1.78 16 40 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 42 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 43 H 0.13 3.78 5.90 -52.49 -0.31 3.47 16 44 H 0.14 1.34 7.95 -52.49 -0.42 0.92 16 45 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -29.91 394.38 -10.30 -40.22 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.71 Total: 8.47 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -4.35 Total: -21.74 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.52 Total: -26.76 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.67 Total: -19.80 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.91 -10.30 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084509969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.422 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.65 seconds