Wall clock time and date at job start Tue Mar 31 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47429 * 2 1 4 4 C 1.50701 * 109.46823 * 239.99977 * 2 1 3 5 5 O 1.21281 * 120.00327 * 278.62595 * 4 2 1 6 6 N 1.34787 * 119.99824 * 98.62814 * 4 2 1 7 7 C 1.46500 * 119.99764 * 184.87822 * 6 4 2 8 8 C 1.50701 * 109.47128 * 80.80631 * 7 6 4 9 9 H 1.07997 * 119.99826 * 0.90131 * 8 7 6 10 10 C 1.37877 * 119.99455 * 180.62288 * 8 7 6 11 11 N 1.31513 * 120.00606 * 0.27306 * 10 8 7 12 12 Si 1.86805 * 119.99455 * 180.27791 * 10 8 7 13 13 H 1.48497 * 109.47375 * 90.00072 * 12 10 8 14 14 H 1.48508 * 109.46663 * 210.00118 * 12 10 8 15 15 H 1.48500 * 109.47109 * 329.99375 * 12 10 8 16 16 C 1.46502 * 119.99660 * 4.87644 * 6 4 2 17 17 C 1.52998 * 109.46954 * 275.35970 * 16 6 4 18 18 H 1.09000 * 110.45687 * 54.13810 * 17 16 6 19 19 C 1.54507 * 110.51119 * 176.74438 * 17 16 6 20 20 C 1.54482 * 104.06238 * 118.64372 * 19 17 16 21 21 O 1.44422 * 104.80484 * 23.98071 * 20 19 17 22 22 C 1.44423 * 105.27454 * 319.49098 * 21 20 19 23 23 N 1.46897 * 109.47105 * 120.00591 * 2 1 3 24 24 C 1.48006 * 110.99569 * 312.10948 * 23 2 1 25 25 C 1.50452 * 112.82260 * 191.35255 * 24 23 2 26 26 C 1.54300 * 108.50419 * 93.72708 * 25 24 23 27 27 C 1.45874 * 112.18674 * 281.46043 * 26 25 24 28 28 C 1.54311 * 112.18361 * 61.12109 * 27 26 25 29 29 C 1.48004 * 110.99975 * 183.39415 * 23 2 1 30 30 H 1.09001 * 109.47195 * 186.47572 * 1 2 3 31 31 H 1.09002 * 109.46922 * 306.47686 * 1 2 3 32 32 H 1.09000 * 109.47080 * 66.47141 * 1 2 3 33 33 H 1.08996 * 109.47275 * 320.80263 * 7 6 4 34 34 H 1.09005 * 109.46790 * 200.80613 * 7 6 4 35 35 H 0.96992 * 120.00526 * 179.97438 * 11 10 8 36 36 H 1.08993 * 109.47196 * 35.36242 * 16 6 4 37 37 H 1.08996 * 109.46585 * 155.36421 * 16 6 4 38 38 H 1.08995 * 110.51536 * 237.28981 * 19 17 16 39 39 H 1.09001 * 110.50963 * 0.02562 * 19 17 16 40 40 H 1.09000 * 110.37076 * 142.81148 * 20 19 17 41 41 H 1.08996 * 110.37336 * 265.14786 * 20 19 17 42 42 H 1.09005 * 110.37070 * 281.67881 * 22 21 20 43 43 H 1.08999 * 110.37493 * 159.34231 * 22 21 20 44 44 H 1.09007 * 108.81084 * 312.20985 * 24 23 2 45 45 H 1.08996 * 108.81615 * 70.48803 * 24 23 2 46 46 H 1.09000 * 109.62807 * 334.01964 * 25 24 23 47 47 H 1.09006 * 109.62516 * 213.43385 * 25 24 23 48 48 H 1.08999 * 108.93945 * 160.76476 * 26 25 24 49 49 H 1.09000 * 108.86748 * 42.11020 * 26 25 24 50 50 H 1.08998 * 108.94204 * 300.42483 * 27 26 25 51 51 H 1.09001 * 108.94281 * 181.81711 * 27 26 25 52 52 H 1.09005 * 109.63403 * 161.75930 * 28 27 26 53 53 H 1.08999 * 109.63833 * 41.16871 * 28 27 26 54 54 H 1.08992 * 108.80992 * 205.69720 * 29 23 2 55 55 H 1.09000 * 108.81096 * 323.96917 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.0859 -1.9219 -1.2519 6 7 2.4220 0.0005 -2.3073 7 6 2.8086 -0.6900 -3.5401 8 6 1.5714 -1.0742 -4.3099 9 1 0.5952 -0.8158 -3.9270 10 6 1.6860 -1.7506 -5.5059 11 7 2.8747 -2.0652 -5.9722 12 14 0.1526 -2.2200 -6.4639 13 1 -0.1994 -1.1245 -7.4026 14 1 0.4101 -3.4654 -7.2308 15 1 -0.9718 -2.4436 -5.5200 16 6 2.4588 1.4638 -2.2446 17 6 1.0680 2.0225 -2.5521 18 1 0.3236 1.5754 -1.8933 19 6 1.0599 3.5612 -2.4128 20 6 0.6894 4.0641 -3.8258 21 8 -0.0188 2.9629 -4.4354 22 6 0.7015 1.7777 -4.0327 23 7 2.0196 -0.6926 1.1993 24 6 1.3228 -0.2094 2.4124 25 6 1.9701 -0.6836 3.6851 26 6 2.9617 0.3979 4.1626 27 6 4.2155 0.3631 3.4178 28 6 4.0057 0.6229 1.9113 29 6 3.4969 -0.6419 1.2751 30 1 -0.3634 -1.0211 0.1159 31 1 -0.3633 0.6110 0.8264 32 1 -0.3633 0.4103 -0.9422 33 1 3.3753 -1.5873 -3.2916 34 1 3.4247 -0.0283 -4.1491 35 1 2.9553 -2.5413 -6.8134 36 1 2.7637 1.7771 -1.2462 37 1 3.1720 1.8409 -2.9775 38 1 0.3098 3.8751 -1.6869 39 1 2.0467 3.9239 -2.1253 40 1 0.0442 4.9401 -3.7597 41 1 1.5900 4.2970 -4.3938 42 1 1.6040 1.6599 -4.6325 43 1 0.0656 0.8973 -4.1256 44 1 1.3191 0.8807 2.4049 45 1 0.2918 -0.5623 2.3897 46 1 2.5053 -1.6147 3.4988 47 1 1.2068 -0.8426 4.4469 48 1 3.1740 0.2410 5.2202 49 1 2.5021 1.3781 4.0360 50 1 4.6767 -0.6160 3.5471 51 1 4.8860 1.1237 3.8180 52 1 4.9529 0.9078 1.4533 53 1 3.2754 1.4206 1.7754 54 1 3.8483 -1.4939 1.8569 55 1 3.9033 -0.7162 0.2665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088428024.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:22 Heat of formation + Delta-G solvation = -96.244693 kcal Electronic energy + Delta-G solvation = -32781.947016 eV Core-core repulsion = 28817.955847 eV Total energy + Delta-G solvation = -3963.991169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 9.20 seconds Orbital eigenvalues (eV) -41.54773 -40.28442 -39.48778 -36.81143 -35.98856 -34.83599 -33.17272 -33.10394 -31.75695 -30.10396 -29.63994 -27.26850 -26.48286 -26.04492 -25.21103 -23.70957 -23.45667 -21.61466 -21.37221 -20.63476 -19.41692 -18.77462 -18.15063 -17.71150 -17.10407 -16.95760 -16.77044 -16.49397 -16.17121 -15.88866 -15.54534 -15.29598 -15.05423 -14.71154 -14.51197 -14.39807 -14.16873 -13.99260 -13.67856 -13.60207 -13.43360 -13.31528 -13.29526 -12.98516 -12.95851 -12.80823 -12.66339 -12.60983 -12.43769 -12.28045 -12.12921 -11.88979 -11.79263 -11.70109 -11.59271 -11.49575 -11.40237 -11.28171 -11.05303 -10.63667 -10.60326 -10.42019 -9.40199 -9.00102 -8.19642 -6.29236 1.34916 1.35768 1.45059 1.85944 2.20652 2.41048 2.94781 3.09112 3.20662 3.55311 3.67846 3.74979 3.83765 3.90854 3.98767 4.04574 4.10371 4.18558 4.21673 4.28736 4.37261 4.39842 4.45667 4.49416 4.54565 4.63145 4.68437 4.69646 4.75365 4.80449 4.85427 4.88385 4.91438 4.95370 5.01932 5.05680 5.11296 5.13319 5.18027 5.20220 5.25750 5.30533 5.31144 5.35548 5.37362 5.44120 5.51540 5.64500 5.88496 5.98916 6.07806 6.10338 6.28547 6.74346 6.84617 7.34592 7.58339 8.87856 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.004091 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.249870 B = 6841.964696 C = 8120.520306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.083 3.917 3 H 0.080 0.920 4 C 0.508 3.492 5 O -0.577 6.577 6 N -0.605 5.605 7 C 0.267 3.733 8 C -0.516 4.516 9 H 0.056 0.944 10 C 0.013 3.987 11 N -0.928 5.928 12 Si 0.947 3.053 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.119 3.881 17 C -0.138 4.138 18 H 0.087 0.913 19 C -0.135 4.135 20 C 0.034 3.966 21 O -0.409 6.409 22 C 0.063 3.937 23 N -0.552 5.552 24 C 0.066 3.934 25 C -0.121 4.121 26 C -0.116 4.116 27 C -0.114 4.114 28 C -0.141 4.141 29 C 0.067 3.933 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.062 0.938 33 H -0.011 1.011 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.054 0.946 51 H 0.072 0.928 52 H 0.071 0.929 53 H 0.071 0.929 54 H 0.066 0.934 55 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 15.681 19.628 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.098 0.902 4 C 0.296 3.704 5 O -0.456 6.456 6 N -0.337 5.337 7 C 0.146 3.854 8 C -0.555 4.555 9 H 0.075 0.925 10 C -0.186 4.186 11 N -0.569 5.569 12 Si 0.772 3.228 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.199 1.199 16 C -0.003 4.003 17 C -0.158 4.158 18 H 0.105 0.895 19 C -0.173 4.173 20 C -0.042 4.042 21 O -0.329 6.329 22 C -0.013 4.013 23 N -0.279 5.279 24 C -0.060 4.060 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.180 4.180 29 C -0.061 4.061 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.007 0.993 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.073 0.927 51 H 0.091 0.909 52 H 0.090 0.910 53 H 0.090 0.910 54 H 0.084 0.916 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.176 14.497 19.293 24.161 hybrid contribution -0.006 -0.407 -1.304 1.366 sum -1.181 14.090 17.989 22.881 Atomic orbital electron populations 1.21904 0.91562 1.02895 1.03339 1.21579 0.97416 0.95910 0.87906 0.90223 1.21052 0.76997 0.87424 0.84878 1.90637 1.55009 1.16621 1.83292 1.48279 1.65274 1.07195 1.12905 1.18698 0.94723 0.91220 0.80737 1.21607 0.93188 1.35881 1.04791 0.92549 1.25638 0.98493 0.95765 0.98678 1.70025 1.23980 1.41452 1.21406 0.85718 0.80133 0.78042 0.78865 1.19346 1.20835 1.19885 1.21838 0.96539 0.78756 1.03212 1.23108 0.98206 0.97581 0.96888 0.89490 1.22937 1.04513 0.91980 0.97825 1.23652 0.97212 0.90579 0.92803 1.89084 1.52794 1.16851 1.74157 1.23477 0.96089 0.87389 0.94367 1.61479 1.05465 1.58933 1.01979 1.21887 0.97939 0.98275 0.87883 1.21454 0.99368 0.99013 0.96002 1.20576 0.95569 0.99003 1.00160 1.20524 0.98531 1.02077 0.93995 1.21873 1.01673 0.97492 0.96923 1.21766 0.86474 0.98395 0.99444 0.93096 0.88155 0.91948 0.99262 0.95849 0.92723 0.88077 0.90086 0.88590 0.87955 0.87345 0.92236 0.93546 0.91244 0.93229 0.90834 0.92441 0.89500 0.90920 0.91370 0.92713 0.90911 0.91040 0.91046 0.91573 0.94883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.01 71.98 0.58 -3.11 16 2 C 0.08 2.43 1.68 44.17 0.07 2.51 16 3 H 0.08 1.88 5.21 -2.39 -0.01 1.86 16 4 C 0.51 21.23 5.03 87.66 0.44 21.67 16 5 O -0.58 -31.02 16.52 -3.03 -0.05 -31.07 16 6 N -0.60 -24.79 2.40 -826.14 -1.98 -26.77 16 7 C 0.27 14.09 4.79 85.63 0.41 14.50 16 8 C -0.52 -28.99 7.31 25.60 0.19 -28.81 16 9 H 0.06 3.16 6.02 -2.91 -0.02 3.15 16 10 C 0.01 0.75 5.46 84.65 0.46 1.21 16 11 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 12 Si 0.95 46.19 29.54 68.60 2.03 48.22 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 15 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 16 C 0.12 3.46 4.26 86.38 0.37 3.82 16 17 C -0.14 -3.79 3.24 -9.78 -0.03 -3.82 16 18 H 0.09 2.40 4.83 -2.39 -0.01 2.39 16 19 C -0.13 -2.48 6.74 31.61 0.21 -2.27 16 20 C 0.03 0.76 7.63 72.49 0.55 1.32 16 21 O -0.41 -13.90 11.65 -148.98 -1.74 -15.64 16 22 C 0.06 2.32 5.44 72.49 0.39 2.71 16 23 N -0.55 -15.36 4.36 -879.37 -3.83 -19.19 16 24 C 0.07 1.29 3.86 85.27 0.33 1.62 16 25 C -0.12 -1.98 5.63 30.21 0.17 -1.81 16 26 C -0.12 -1.51 5.30 28.85 0.15 -1.36 16 27 C -0.11 -1.70 5.30 28.85 0.15 -1.55 16 28 C -0.14 -2.62 5.57 30.21 0.17 -2.45 16 29 C 0.07 1.80 4.99 85.26 0.43 2.22 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.83 6.95 -2.39 -0.02 1.82 16 32 H 0.06 1.73 5.62 -2.39 -0.01 1.72 16 33 H -0.01 -0.66 7.65 -2.39 -0.02 -0.68 16 34 H 0.02 1.25 7.75 -2.38 -0.02 1.23 16 35 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.10 2.20 6.18 -2.39 -0.01 2.19 16 37 H 0.08 2.33 7.63 -2.39 -0.02 2.32 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.38 7.73 -2.39 -0.02 1.36 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 42 H 0.05 1.91 7.37 -2.38 -0.02 1.89 16 43 H 0.07 3.01 5.97 -2.39 -0.01 2.99 16 44 H 0.05 0.79 6.47 -2.38 -0.02 0.78 16 45 H 0.07 1.43 7.02 -2.39 -0.02 1.41 16 46 H 0.06 1.19 7.08 -2.39 -0.02 1.17 16 47 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 0.79 7.51 -2.39 -0.02 0.77 16 50 H 0.05 0.91 7.52 -2.39 -0.02 0.89 16 51 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 53 H 0.07 1.21 6.61 -2.39 -0.02 1.19 16 54 H 0.07 1.85 6.59 -2.39 -0.02 1.83 16 55 H 0.03 1.11 6.65 -2.39 -0.02 1.10 16 Total: -1.00 -76.17 397.07 0.63 -75.53 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.87 Total: 18.63 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.05 Total: 6.42 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -5.52 Total: -102.10 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -1.79 Total: -46.70 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -76.17 0.63 -75.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088428024.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.712 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.20 seconds