Wall clock time and date at job start Tue Mar 31 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.30995 * 119.99623 * 2 1 4 4 C 1.50705 * 119.99623 * 179.97438 * 3 2 1 5 5 O 1.45195 * 109.47179 * 134.99915 * 4 3 2 6 6 C 1.34714 * 116.99599 * 179.97438 * 5 4 3 7 7 O 1.21468 * 120.00249 * 0.02562 * 6 5 4 8 8 C 1.47730 * 119.99457 * 180.02562 * 6 5 4 9 9 C 1.39634 * 120.14695 * 179.97438 * 8 6 5 10 10 C 1.37938 * 119.84795 * 179.97438 * 9 8 6 11 11 C 1.38375 * 120.15129 * 0.02562 * 10 9 8 12 12 S 1.76200 * 119.84976 * 179.72299 * 11 10 9 13 13 O 1.42099 * 106.40111 * 203.53809 * 12 11 10 14 14 O 1.42099 * 106.40167 * 336.46362 * 12 11 10 15 15 N 1.65603 * 107.21686 * 89.99711 * 12 11 10 16 16 C 1.46505 * 119.99695 * 65.00350 * 15 12 11 17 17 C 1.50696 * 109.47164 * 164.99819 * 16 15 12 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00469 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99421 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00456 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47011 * 60.00015 * 21 19 17 23 23 H 1.48497 * 109.47081 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46939 * 300.00274 * 21 19 17 25 25 C 1.38366 * 120.29949 * 0.02562 * 11 10 9 26 26 C 1.37941 * 120.15358 * 359.97438 * 25 11 10 27 27 H 1.09002 * 109.47437 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47302 * 300.00556 * 1 2 3 29 29 H 1.09012 * 109.46831 * 60.00206 * 1 2 3 30 30 H 1.07993 * 119.99601 * 179.97438 * 2 1 3 31 31 H 1.07993 * 120.00776 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47163 * 14.99415 * 4 3 2 33 33 H 1.09001 * 109.46961 * 255.00535 * 4 3 2 34 34 H 1.08000 * 120.07382 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.92823 * 179.97438 * 10 9 8 36 36 H 0.96999 * 120.00557 * 244.99759 * 15 12 11 37 37 H 1.09002 * 109.46874 * 284.99844 * 16 15 12 38 38 H 1.08993 * 109.47400 * 44.99372 * 16 15 12 39 39 H 0.96998 * 120.00169 * 179.97438 * 20 19 17 40 40 H 1.08004 * 119.92137 * 180.02562 * 25 11 10 41 41 H 1.08002 * 120.07623 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 8 4.1534 2.1022 -0.9674 6 6 5.4890 2.2273 -1.0913 7 8 6.2286 1.5463 -0.4097 8 6 6.0540 3.1928 -2.0562 9 6 7.4378 3.3255 -2.1868 10 6 7.9587 4.2285 -3.0900 11 6 7.1133 5.0024 -3.8653 12 16 7.7872 6.1586 -5.0114 13 8 6.7835 7.1411 -5.2273 14 8 9.0929 6.4707 -4.5456 15 7 7.9819 5.3646 -6.4516 16 6 6.8104 4.8739 -7.1816 17 6 7.2063 4.5314 -8.5948 18 1 8.2284 4.6655 -8.9168 19 6 6.2639 4.0459 -9.4764 20 7 5.0196 3.8812 -9.0838 21 14 6.7548 3.6208 -11.2278 22 1 7.8021 2.5682 -11.2067 23 1 5.5675 3.1222 -11.9675 24 1 7.2851 4.8333 -11.9014 25 6 5.7410 4.8767 -3.7402 26 6 5.2067 3.9776 -2.8409 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 2.0470 -0.9353 0.0004 31 1 1.6221 2.0698 -0.0004 32 1 4.0325 0.1417 -0.2649 33 1 4.0319 1.4006 0.9934 34 1 8.0988 2.7218 -1.5826 35 1 9.0289 4.3324 -3.1918 36 1 8.8716 5.2246 -6.8118 37 1 6.4211 3.9837 -6.6875 38 1 6.0417 5.6464 -7.1967 39 1 4.3564 3.5400 -9.7040 40 1 5.0868 5.4835 -4.3487 41 1 4.1354 3.8809 -2.7439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089597905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:18 Heat of formation + Delta-G solvation = -122.180564 kcal Electronic energy + Delta-G solvation = -25936.642724 eV Core-core repulsion = 21909.061817 eV Total energy + Delta-G solvation = -4027.580907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 15.76 seconds Orbital eigenvalues (eV) -40.83039 -38.93225 -37.02200 -36.82480 -35.44119 -35.41474 -34.69769 -32.21218 -31.91656 -31.20678 -29.78503 -26.79772 -25.64321 -24.05953 -22.93303 -22.50849 -21.30117 -20.03777 -19.19758 -18.30438 -17.71959 -17.45897 -17.00126 -16.68799 -15.98061 -15.67655 -15.24420 -14.97207 -14.68400 -14.49190 -14.40773 -13.85853 -13.70837 -13.60557 -13.49336 -13.26522 -12.96045 -12.72005 -12.58553 -12.17151 -12.14328 -11.88058 -11.70704 -11.62541 -11.58290 -11.33411 -11.14993 -10.99959 -10.94914 -10.81684 -10.60176 -10.16880 -9.57628 -9.50566 -9.48914 -9.16465 -8.96251 -8.29856 -6.22021 -4.26846 0.14305 0.87196 1.20173 1.51822 2.16880 2.49960 3.24616 3.29361 3.30777 3.37279 3.66354 4.14857 4.21597 4.31270 4.47971 4.51969 4.60450 4.76186 4.84011 4.86285 4.95762 5.10684 5.15145 5.18566 5.24247 5.30257 5.37082 5.45995 5.57482 5.81729 5.84936 5.98793 6.05547 6.10761 6.18100 6.27936 6.35347 6.61655 7.21279 7.26957 7.43860 7.71963 7.75483 8.11585 8.76749 9.38372 10.88272 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.002864 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.292377 B = 9773.278324 C =11805.286314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.136 4.136 3 C -0.168 4.168 4 C 0.099 3.901 5 O -0.345 6.345 6 C 0.511 3.489 7 O -0.502 6.502 8 C -0.083 4.083 9 C -0.080 4.080 10 C -0.032 4.032 11 C -0.637 4.637 12 S 2.689 3.311 13 O -0.956 6.956 14 O -0.975 6.975 15 N -1.100 6.100 16 C 0.245 3.755 17 C -0.531 4.531 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.904 3.096 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.025 4.025 26 C -0.082 4.082 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.412 0.588 37 H 0.022 0.978 38 H 0.040 0.960 39 H 0.267 0.733 40 H 0.153 0.847 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -5.274 17.598 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 C -0.186 4.186 4 C 0.026 3.974 5 O -0.262 6.262 6 C 0.356 3.644 7 O -0.391 6.391 8 C -0.084 4.084 9 C -0.099 4.099 10 C -0.051 4.051 11 C -0.721 4.721 12 S 2.775 3.225 13 O -0.946 6.946 14 O -0.965 6.965 15 N -0.863 5.863 16 C 0.122 3.878 17 C -0.571 4.571 18 H 0.084 0.916 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.044 4.044 26 C -0.101 4.101 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.247 0.753 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.171 0.829 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.451 -4.692 18.036 19.161 hybrid contribution 0.233 -1.295 -0.738 1.509 sum -4.218 -5.987 17.298 18.784 Atomic orbital electron populations 1.20887 0.92261 1.02784 1.02503 1.22909 0.96765 0.97695 0.98087 1.22498 0.93338 0.99418 1.03368 1.22012 0.92256 0.91540 0.91572 1.86579 1.23500 1.58121 1.58006 1.21200 0.80674 0.81274 0.81244 1.90834 1.60439 1.43907 1.43934 1.19354 0.94341 0.97299 0.97412 1.21321 0.93277 0.97542 0.97755 1.20886 1.00230 0.91781 0.92189 1.31649 1.03657 1.19139 1.17688 1.02040 0.73264 0.74058 0.73118 1.93582 1.60833 1.55307 1.84891 1.93541 1.38292 1.83260 1.81404 1.55446 1.17238 1.77478 1.36130 1.19124 0.81924 0.94571 0.92211 1.21140 0.96241 1.44666 0.95044 0.91596 1.24963 0.94787 0.95173 0.99203 1.69915 1.01892 1.44826 1.36133 0.86465 0.77969 0.78884 0.83568 1.20098 1.21105 1.19981 1.21070 0.93329 0.95040 0.95007 1.21593 1.00676 0.93873 0.93955 0.91708 0.91347 0.91021 0.87051 0.85972 0.90522 0.90103 0.83777 0.83254 0.75302 0.95972 0.94188 0.92355 0.82887 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 10.17 36.01 0.37 -0.34 16 2 C -0.14 -0.94 9.86 -36.02 -0.36 -1.30 16 3 C -0.17 -1.34 9.54 -36.02 -0.34 -1.68 16 4 C 0.10 0.94 5.89 36.01 0.21 1.15 16 5 O -0.35 -4.09 9.46 -40.53 -0.38 -4.48 16 6 C 0.51 6.82 7.90 34.61 0.27 7.10 16 7 O -0.50 -7.46 16.14 -19.24 -0.31 -7.78 16 8 C -0.08 -1.12 5.87 -104.98 -0.62 -1.74 16 9 C -0.08 -1.05 9.60 -39.17 -0.38 -1.43 16 10 C -0.03 -0.44 9.50 -39.64 -0.38 -0.82 16 11 C -0.64 -9.88 5.95 -39.48 -0.24 -10.12 16 12 S 2.69 46.86 5.74 -107.50 -0.62 46.25 16 13 O -0.96 -19.28 16.73 -57.17 -0.96 -20.23 16 14 O -0.97 -17.67 17.27 -57.17 -0.99 -18.66 16 15 N -1.10 -20.98 5.99 -11.66 -0.07 -21.05 16 16 C 0.24 5.77 5.98 -5.19 -0.03 5.74 16 17 C -0.53 -13.79 9.27 -34.44 -0.32 -14.11 16 18 H 0.07 1.63 7.65 -52.48 -0.40 1.23 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 21 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.03 -0.38 9.50 -39.64 -0.38 -0.76 16 26 C -0.08 -1.09 9.62 -39.17 -0.38 -1.47 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 30 H 0.11 0.69 7.90 -52.49 -0.41 0.27 16 31 H 0.12 0.91 8.05 -52.49 -0.42 0.49 16 32 H 0.08 0.70 7.86 -51.93 -0.41 0.30 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.14 1.65 7.65 -52.49 -0.40 1.24 16 35 H 0.15 1.77 7.61 -52.49 -0.40 1.37 16 36 H 0.41 7.14 8.54 -34.48 -0.29 6.85 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.15 2.21 7.60 -52.48 -0.40 1.81 16 41 H 0.15 1.63 7.61 -52.49 -0.40 1.23 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -32.48 376.78 -9.77 -42.25 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.19 Total: 4.83 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.65 Total: -18.21 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.67 Total: -45.02 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -2.64 Total: -51.14 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 46.86 SS G_CDS: -0.62 Total: 46.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.48 -9.77 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089597905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.926 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.77 seconds