Wall clock time and date at job start Tue Mar 31 2020 06:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04964 * 3 2 1 5 5 C 1.34854 * 125.88041 * 94.69246 * 4 3 2 6 6 C 1.40932 * 107.42905 * 179.84862 * 5 4 3 7 7 Br 1.89097 * 126.29725 * 180.18116 * 6 5 4 8 8 C 1.34909 * 107.40844 * 0.41514 * 6 5 4 9 9 N 1.36334 * 125.88268 * 275.00215 * 4 3 2 10 10 C 1.46507 * 125.63326 * 0.02562 * 9 4 3 11 11 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 12 12 C 1.53000 * 109.47072 * 293.95488 * 11 2 1 13 13 H 1.08998 * 109.47666 * 54.99810 * 12 11 2 14 14 C 1.47202 * 109.46984 * 295.00128 * 12 11 2 15 15 N 3.66503 * 112.02551 * 160.59426 * 2 1 3 16 16 C 1.52998 * 109.46937 * 175.00313 * 12 11 2 17 17 C 1.50707 * 109.47006 * 184.99877 * 16 12 11 18 18 H 1.07996 * 119.99871 * 0.02562 * 17 16 12 19 19 C 1.37879 * 119.99966 * 179.97438 * 17 16 12 20 20 N 1.31513 * 120.00032 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99940 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47111 * 89.99462 * 21 19 17 23 23 H 1.48502 * 109.46843 * 209.99879 * 21 19 17 24 24 H 1.48500 * 109.46659 * 329.99487 * 21 19 17 25 25 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 26 26 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 27 27 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 28 28 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 29 29 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 30 30 H 1.07996 * 126.28805 * 359.97307 * 5 4 3 31 31 H 1.07997 * 125.90200 * 179.72954 * 8 6 5 32 32 H 1.09000 * 109.46857 * 90.00824 * 10 9 4 33 33 H 1.08998 * 109.46745 * 210.00191 * 10 9 4 34 34 H 1.08996 * 109.47033 * 330.00075 * 10 9 4 35 35 H 1.08993 * 109.47164 * 53.95342 * 11 2 1 36 36 H 1.08996 * 109.46920 * 173.95376 * 11 2 1 37 37 H 1.09002 * 109.46907 * 304.99730 * 16 12 11 38 38 H 1.09002 * 109.47546 * 64.99887 * 16 12 11 39 39 H 0.97002 * 119.99939 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 6 2.4197 2.1190 2.3944 6 6 1.7069 2.8366 3.3757 7 35 2.3116 3.2524 5.1185 8 6 0.5116 3.1680 2.8450 9 7 0.4634 2.6856 1.5697 10 6 -0.6635 2.8295 0.6446 11 6 1.9954 -0.7660 -1.1377 12 6 1.6313 -2.2426 -0.9705 13 1 0.5531 -2.3389 -0.8433 14 6 2.3155 -2.7855 0.2144 15 7 2.8435 -3.2045 1.1289 16 6 2.0698 -3.0198 -2.2133 17 6 1.6028 -4.4485 -2.1030 18 1 1.0485 -4.7697 -1.2336 19 6 1.8825 -5.3450 -3.1124 20 7 1.4755 -6.5919 -3.0159 21 14 2.8409 -4.7891 -4.6165 22 1 4.2934 -4.9848 -4.3780 23 1 2.4203 -5.5890 -5.7948 24 1 2.5704 -3.3514 -4.8720 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3632 0.5739 0.8525 27 1 -0.3633 0.4513 -0.9231 28 1 3.0798 1.3443 -0.1082 29 1 1.5611 1.9273 -0.8308 30 1 3.4114 1.7047 2.4999 31 1 -0.2717 3.7194 3.3435 32 1 -1.3417 1.9846 0.7640 33 1 -1.1955 3.7558 0.8616 34 1 -0.2917 2.8553 -0.3796 35 1 1.5610 -0.3872 -2.0628 36 1 3.0796 -0.6611 -1.1758 37 1 1.6328 -2.5622 -3.1009 38 1 3.1568 -2.9978 -2.2909 39 1 1.6726 -7.2227 -3.7259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089755053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:58 Heat of formation + Delta-G solvation = 85.887813 kcal Electronic energy + Delta-G solvation = -20906.171830 eV Core-core repulsion = 17703.434804 eV Total energy + Delta-G solvation = -3202.737026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 339.064 amu Computer time = 14.09 seconds Orbital eigenvalues (eV) -41.63419 -38.18035 -35.75362 -33.72514 -33.47736 -32.05633 -31.08614 -29.72196 -27.75506 -26.98075 -26.15693 -24.40931 -21.67940 -21.48448 -20.55225 -19.33379 -17.32134 -17.01415 -16.74200 -16.24891 -15.37645 -15.00163 -14.51132 -14.20302 -14.01783 -13.60181 -13.27737 -13.10942 -13.02653 -12.95685 -12.54208 -12.48297 -12.32774 -12.15522 -11.87263 -11.70615 -11.50296 -11.36775 -11.24727 -10.91823 -10.79168 -10.26410 -10.23273 -10.00682 -9.81385 -9.35177 -8.67657 -8.64078 -8.46003 -8.19348 -6.12733 -4.13621 1.68544 1.85154 2.55454 2.78360 3.24703 3.31401 3.32793 3.70301 3.79239 3.96776 4.35800 4.40439 4.54131 4.68800 4.74947 4.78689 4.90730 5.00873 5.17884 5.21996 5.27574 5.32017 5.35523 5.55813 5.59383 5.75879 5.81190 5.89883 5.95687 6.14971 6.26292 6.54465 6.82036 6.88949 6.90534 6.96922 7.03273 7.08921 7.61080 8.38574 8.56413 8.91012 9.46860 11.00387 Molecular weight = 339.06amu Principal moments of inertia in cm(-1) A = 0.023370 B = 0.002430 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.854314 B =11522.110932 C =12139.551634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.537 5.537 3 C 0.125 3.875 4 C 0.037 3.963 5 C -0.150 4.150 6 C -0.166 4.166 7 Br -0.042 7.042 8 C 0.025 3.975 9 N -0.440 5.440 10 C 0.065 3.935 11 C 0.059 3.941 12 C 0.022 3.978 13 H 0.105 0.895 14 C 0.250 3.750 15 N -0.467 5.467 16 C -0.005 4.005 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.263 1.263 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.144 0.856 31 H 0.169 0.831 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.021 0.979 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 26.732 8.311 28.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.261 5.261 3 C -0.003 4.003 4 C -0.074 4.074 5 C -0.176 4.176 6 C -0.252 4.252 7 Br 0.041 6.959 8 C -0.109 4.109 9 N -0.116 5.116 10 C -0.076 4.076 11 C -0.069 4.069 12 C 0.000 4.000 13 H 0.122 0.878 14 C -0.067 4.067 15 N -0.144 5.144 16 C -0.044 4.044 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.188 1.188 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.117 0.883 29 H 0.060 0.940 30 H 0.161 0.839 31 H 0.186 0.814 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.055 25.868 10.399 28.047 hybrid contribution -0.244 0.472 -2.216 2.278 sum -3.299 26.340 8.184 27.779 Atomic orbital electron populations 1.22773 0.87611 1.03486 0.99900 1.62018 1.08026 1.12040 1.44036 1.20541 1.01308 0.87783 0.90714 1.20157 0.86685 1.02395 0.98203 1.20549 1.01137 1.04403 0.91506 1.21015 0.98390 1.12311 0.93502 1.96568 1.89333 1.93655 1.16294 1.21586 0.98890 1.05215 0.85224 1.43975 1.13523 1.42622 1.11454 1.22265 0.88190 1.03561 0.93584 1.22309 1.01004 0.92487 0.91104 1.18967 0.99646 0.91914 0.89504 0.87752 1.28654 0.93040 0.91797 0.93202 1.81011 1.10337 1.10320 1.12713 1.19644 0.97117 0.96404 0.91212 1.21019 1.36759 0.92086 1.06717 0.90790 1.24996 0.95213 0.94697 0.98207 1.69906 1.46180 1.03544 1.33833 0.86815 0.80717 0.79225 0.82753 1.20190 1.21283 1.18783 0.90329 0.91439 0.95343 0.88291 0.93999 0.83853 0.81401 0.89915 0.89748 0.89586 0.92724 0.89916 0.94599 0.96032 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 7.98 60.07 0.48 0.59 16 2 N -0.54 -6.50 4.45 -244.37 -1.09 -7.59 16 3 C 0.12 1.24 5.16 -4.98 -0.03 1.22 16 4 C 0.04 0.40 5.69 -81.79 -0.47 -0.06 16 5 C -0.15 -1.84 10.75 -39.76 -0.43 -2.26 16 6 C -0.17 -1.91 6.57 -39.74 -0.26 -2.17 16 7 Br -0.04 -0.46 34.09 -68.01 -2.32 -2.78 16 8 C 0.02 0.24 11.41 -16.69 -0.19 0.05 16 9 N -0.44 -3.97 2.75 -119.86 -0.33 -4.30 16 10 C 0.07 0.36 9.24 59.85 0.55 0.91 16 11 C 0.06 0.77 4.32 -3.82 -0.02 0.75 16 12 C 0.02 0.37 2.13 -93.41 -0.20 0.17 16 13 H 0.10 1.72 6.34 -51.93 -0.33 1.39 16 14 C 0.25 5.16 13.67 -20.76 -0.28 4.88 16 15 N -0.47 -10.72 18.54 42.15 0.78 -9.94 16 16 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 17 C -0.53 -14.04 9.15 -34.44 -0.32 -14.36 16 18 H 0.07 2.17 7.84 -52.49 -0.41 1.76 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 21 Si 0.88 20.33 27.47 -169.99 -4.67 15.66 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 25 H 0.08 0.92 6.37 -51.93 -0.33 0.59 16 26 H 0.07 0.68 4.32 -51.93 -0.22 0.45 16 27 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.10 0.95 7.93 -51.93 -0.41 0.54 16 29 H 0.04 0.35 7.19 -51.93 -0.37 -0.03 16 30 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.08 0.43 6.33 -51.93 -0.33 0.10 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.41 7.12 -51.93 -0.37 0.04 16 35 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 37 H 0.04 0.70 7.20 -51.93 -0.37 0.32 16 38 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -32.78 342.02 -8.28 -41.06 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.24 Total: -2.56 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.35 Total: -8.61 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.14 Total: -47.93 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.32 Total: -2.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.78 -8.28 -41.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089755053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.946 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.10 seconds