Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99788 * 2 1 4 4 C 1.50703 * 109.47226 * 293.95469 * 3 2 1 5 5 C 1.34848 * 125.88330 * 94.97303 * 4 3 2 6 6 C 1.40930 * 107.43173 * 180.02562 * 5 4 3 7 7 Br 1.89106 * 126.29649 * 180.02562 * 6 5 4 8 8 C 1.34899 * 107.40977 * 0.02562 * 6 5 4 9 9 N 1.36335 * 125.88032 * 275.00292 * 4 3 2 10 10 C 1.46500 * 125.63703 * 359.71346 * 9 4 3 11 11 C 1.46902 * 111.00189 * 123.95071 * 2 1 3 12 12 C 1.52999 * 109.46897 * 66.04740 * 11 2 1 13 13 H 1.09004 * 109.47173 * 304.99811 * 12 11 2 14 14 C 1.47203 * 109.46992 * 64.99860 * 12 11 2 15 15 N 3.66491 * 112.02816 * 199.41112 * 2 1 3 16 16 C 1.52997 * 109.47062 * 184.99892 * 12 11 2 17 17 C 1.50702 * 109.47100 * 174.99754 * 16 12 11 18 18 H 1.08004 * 120.00169 * 0.02562 * 17 16 12 19 19 C 1.37871 * 120.00129 * 179.97438 * 17 16 12 20 20 N 1.31520 * 120.00081 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00241 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47443 * 59.99825 * 21 19 17 23 23 H 1.48498 * 109.47272 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46916 * 299.99819 * 21 19 17 25 25 H 1.09000 * 109.47260 * 59.99800 * 1 2 3 26 26 H 1.08998 * 109.46818 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46736 * 300.00054 * 1 2 3 28 28 H 1.09004 * 109.47032 * 173.95458 * 3 2 1 29 29 H 1.08999 * 109.47487 * 53.95440 * 3 2 1 30 30 H 1.08001 * 126.28508 * 0.05152 * 5 4 3 31 31 H 1.07991 * 125.90509 * 180.02562 * 8 6 5 32 32 H 1.09008 * 109.47314 * 89.99950 * 10 9 4 33 33 H 1.09003 * 109.47296 * 209.99553 * 10 9 4 34 34 H 1.08999 * 109.47465 * 330.00311 * 10 9 4 35 35 H 1.09001 * 109.46971 * 186.04684 * 11 2 1 36 36 H 1.08997 * 109.46943 * 306.05084 * 11 2 1 37 37 H 1.08998 * 109.47235 * 294.99732 * 16 12 11 38 38 H 1.09006 * 109.46961 * 55.00116 * 16 12 11 39 39 H 0.96999 * 120.00011 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 6 0.5641 2.8368 -1.5087 6 6 0.6069 3.2580 -2.8529 7 35 -0.6441 4.3856 -3.7130 8 6 1.7044 2.7090 -3.4132 9 7 2.3409 1.9650 -2.4630 10 6 3.5792 1.2075 -2.6602 11 6 1.9955 -0.7659 1.1376 12 6 1.6315 -2.2425 0.9704 13 1 0.5532 -2.3389 0.8434 14 6 2.3156 -2.7853 -0.2146 15 7 2.8436 -3.2043 -1.1291 16 6 2.0701 -3.0198 2.2131 17 6 1.6032 -4.4484 2.1029 18 1 1.0494 -4.7700 1.2331 19 6 1.8838 -5.3452 3.1117 20 7 2.5586 -4.9539 4.1706 21 14 1.3057 -7.1162 2.9747 22 1 1.9009 -7.7391 1.7653 23 1 1.7313 -7.8706 4.1810 24 1 -0.1753 -7.1467 2.8694 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.0797 1.3444 0.1082 29 1 1.5611 1.9274 0.8309 30 1 -0.1893 3.0987 -0.7805 31 1 2.0245 2.8373 -4.4365 32 1 3.3381 0.1944 -2.9823 33 1 4.1867 1.6960 -3.4221 34 1 4.1343 1.1682 -1.7230 35 1 3.0798 -0.6610 1.1756 36 1 1.5611 -0.3872 2.0628 37 1 3.1571 -2.9978 2.2907 38 1 1.6331 -2.5622 3.1008 39 1 2.7564 -5.5849 4.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089755055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = 75.026387 kcal Electronic energy + Delta-G solvation = -20855.080499 eV Core-core repulsion = 17651.872486 eV Total energy + Delta-G solvation = -3203.208013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 339.064 amu Computer time = 7.18 seconds Orbital eigenvalues (eV) -41.50928 -38.07606 -35.71222 -33.67286 -33.38379 -32.01311 -30.83948 -29.65906 -27.37400 -26.67046 -26.13709 -24.30060 -21.88294 -21.46952 -20.53590 -19.32977 -17.13643 -16.70775 -16.56091 -15.85727 -15.14787 -14.96148 -14.67303 -14.38124 -13.78462 -13.57363 -13.24676 -12.93675 -12.82904 -12.70789 -12.52461 -12.40716 -12.31296 -11.98170 -11.64337 -11.57982 -11.45482 -11.25103 -11.07765 -10.89497 -10.70397 -10.57994 -10.23232 -10.18236 -9.58822 -9.28105 -8.64420 -8.48816 -8.38827 -8.13805 -6.12809 -4.16167 1.70417 1.93422 2.54707 2.89963 3.29018 3.33349 3.37063 3.67875 3.78048 4.07002 4.38924 4.57307 4.64199 4.82438 4.86529 4.98459 5.06794 5.25354 5.29041 5.30661 5.39094 5.45363 5.52294 5.68182 5.74992 5.80627 5.93048 5.95912 6.09698 6.32210 6.45446 6.56512 6.88555 6.99946 7.07742 7.14075 7.38263 7.48098 7.82107 8.19499 8.53040 8.88253 9.49553 10.98006 Molecular weight = 339.06amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.002261 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.432397 B =12381.322133 C =12625.956670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.543 5.543 3 C 0.120 3.880 4 C 0.044 3.956 5 C -0.169 4.169 6 C -0.167 4.167 7 Br -0.045 7.045 8 C 0.025 3.975 9 N -0.427 5.427 10 C 0.074 3.926 11 C 0.062 3.938 12 C 0.010 3.990 13 H 0.101 0.899 14 C 0.258 3.742 15 N -0.482 5.482 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.141 0.859 31 H 0.168 0.832 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 21.645 -12.123 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.267 5.267 3 C -0.008 4.008 4 C -0.069 4.069 5 C -0.195 4.195 6 C -0.254 4.254 7 Br 0.039 6.961 8 C -0.110 4.110 9 N -0.101 5.101 10 C -0.067 4.067 11 C -0.066 4.066 12 C -0.012 4.012 13 H 0.119 0.881 14 C -0.059 4.059 15 N -0.159 5.159 16 C -0.006 4.006 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.185 0.815 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.215 20.914 -14.105 25.323 hybrid contribution -0.489 -0.813 1.184 1.518 sum -2.705 20.100 -12.920 24.047 Atomic orbital electron populations 1.22500 0.86827 1.02737 1.00875 1.62039 1.08767 1.11794 1.44116 1.20527 1.00431 0.88654 0.91183 1.20183 0.95061 1.03024 0.88629 1.20506 0.99945 1.03818 0.95191 1.20943 0.99236 1.08430 0.96743 1.96555 1.56719 1.64024 1.78805 1.21611 0.95049 0.99296 0.95052 1.43935 1.20441 1.36901 1.08869 1.22075 0.83905 0.96890 1.03829 1.22264 1.00612 0.92415 0.91337 1.19269 0.99347 0.92386 0.90230 0.88089 1.28863 0.92660 0.91372 0.93019 1.80972 1.10826 1.10903 1.13165 1.19164 0.97660 0.94379 0.89421 1.21094 1.36142 0.94497 1.04803 0.92585 1.24944 0.94896 0.98833 0.95225 1.69925 1.39345 1.35399 1.08366 0.86656 0.79289 0.84642 0.77519 1.20226 1.21168 1.20025 0.91157 0.90722 0.95196 0.90074 0.92072 0.84108 0.81486 0.90005 0.90010 0.89505 0.90335 0.92520 0.95614 0.94435 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 60.06 0.55 0.77 16 2 N -0.54 -6.79 4.45 -244.37 -1.09 -7.88 16 3 C 0.12 1.26 5.12 -4.97 -0.03 1.24 16 4 C 0.04 0.49 5.64 -81.79 -0.46 0.03 16 5 C -0.17 -1.91 9.71 -39.77 -0.39 -2.30 16 6 C -0.17 -1.89 6.57 -39.75 -0.26 -2.15 16 7 Br -0.04 -0.46 34.09 -68.01 -2.32 -2.78 16 8 C 0.02 0.26 11.40 -16.69 -0.19 0.06 16 9 N -0.43 -4.51 3.15 -119.86 -0.38 -4.89 16 10 C 0.07 0.63 10.92 59.85 0.65 1.29 16 11 C 0.06 0.85 4.32 -3.82 -0.02 0.84 16 12 C 0.01 0.17 2.14 -93.41 -0.20 -0.03 16 13 H 0.10 1.71 6.26 -51.93 -0.33 1.39 16 14 C 0.26 5.18 13.67 -20.76 -0.28 4.90 16 15 N -0.48 -10.50 18.54 42.15 0.78 -9.72 16 16 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 17 C -0.53 -13.80 8.60 -34.44 -0.30 -14.09 16 18 H 0.06 1.46 7.59 -52.48 -0.40 1.07 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.07 0.85 6.54 -51.93 -0.34 0.51 16 26 H 0.07 0.94 6.20 -51.93 -0.32 0.62 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.79 7.00 -51.93 -0.36 0.42 16 29 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.69 7.12 -51.93 -0.37 0.32 16 35 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 36 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -30.27 351.49 -8.60 -38.87 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.47 Total: -3.32 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.14 Total: -7.23 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.05 Total: -46.90 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.32 Total: -2.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.27 -8.60 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089755055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.898 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.18 seconds