Wall clock time and date at job start Tue Mar 31 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47386 * 116.50909 * 3 2 1 5 5 C 1.37101 * 119.99697 * 264.25501 * 4 3 2 6 6 H 1.08006 * 119.99338 * 197.70135 * 5 4 3 7 7 C 1.38951 * 120.00027 * 17.70493 * 5 4 3 8 8 N 1.31407 * 119.99957 * 21.49727 * 7 5 4 9 9 Si 1.86794 * 119.99727 * 201.49836 * 7 5 4 10 10 H 1.48505 * 109.47296 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47289 * 119.99984 * 9 7 5 12 12 H 1.48504 * 109.47304 * 240.00164 * 9 7 5 13 13 C 1.34773 * 120.00215 * 84.25311 * 4 3 2 14 14 O 1.21290 * 120.00288 * 180.02562 * 13 4 3 15 15 C 1.50709 * 119.99803 * 0.02562 * 13 4 3 16 16 H 1.08994 * 115.55080 * 325.67105 * 15 13 4 17 17 C 1.52995 * 117.51769 * 111.37004 * 15 13 4 18 18 C 1.52997 * 117.49644 * 179.97438 * 15 13 4 19 19 H 1.08999 * 117.49566 * 144.97612 * 18 15 13 20 20 C 1.50699 * 117.50096 * 359.97438 * 18 15 13 21 21 C 1.38240 * 119.99464 * 300.25612 * 20 18 15 22 22 C 1.38209 * 120.02554 * 180.29807 * 21 20 18 23 23 C 1.38380 * 120.01157 * 359.72448 * 22 21 20 24 24 Cl 1.73597 * 120.00556 * 180.02562 * 23 22 21 25 25 C 1.38311 * 119.98688 * 359.97438 * 23 22 21 26 26 C 1.38341 * 119.99001 * 120.00250 * 20 18 15 27 27 Cl 1.73594 * 120.00852 * 359.97395 * 26 20 18 28 28 H 1.08997 * 109.47592 * 356.50483 * 3 2 1 29 29 H 1.09000 * 109.46851 * 236.51004 * 3 2 1 30 30 H 0.97004 * 119.99605 * 179.97438 * 8 7 5 31 31 H 1.09003 * 117.50048 * 359.97438 * 17 15 13 32 32 H 1.08996 * 117.50133 * 214.97042 * 17 15 13 33 33 H 1.08000 * 119.98729 * 0.02562 * 21 20 18 34 34 H 1.07998 * 119.99415 * 179.69989 * 22 21 20 35 35 H 1.08000 * 120.01372 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.6174 -1.2360 5 6 3.4370 -0.1689 -2.3061 6 1 4.0530 0.2331 -3.0970 7 6 2.9900 -1.4829 -2.3732 8 7 1.9358 -1.8543 -1.6821 9 14 3.8876 -2.7211 -3.4457 10 1 5.0337 -2.0562 -4.1164 11 1 4.3866 -3.8367 -2.6022 12 1 2.9560 -3.2546 -4.4717 13 6 3.2100 1.9576 -1.3211 14 8 3.6137 2.4682 -2.3445 15 6 2.8357 2.8218 -0.1445 16 1 2.0030 2.4600 0.4586 17 6 3.9648 3.5578 0.5795 18 6 2.9878 4.3359 -0.3034 19 1 2.2547 4.9703 0.1946 20 6 3.5010 4.8488 -1.6242 21 6 4.7457 4.4576 -2.0811 22 6 5.2195 4.9325 -3.2895 23 6 4.4458 5.7955 -4.0454 24 17 5.0408 6.3914 -5.5634 25 6 3.1978 6.1824 -3.5917 26 6 2.7241 5.7071 -2.3817 27 17 1.1581 6.1925 -1.8112 28 1 2.9718 -1.0249 0.0626 29 1 2.9710 0.5679 0.8571 30 1 1.6236 -2.7715 -1.7293 31 1 4.9788 3.4168 0.2052 32 1 3.8749 3.6803 1.6588 33 1 5.3499 3.7840 -1.4915 34 1 6.1940 4.6303 -3.6436 35 1 2.5937 6.8563 -4.1811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089768366.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:10 Heat of formation + Delta-G solvation = 53.054560 kcal Electronic energy + Delta-G solvation = -24296.829065 eV Core-core repulsion = 20541.564855 eV Total energy + Delta-G solvation = -3755.264211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.033 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15227 -38.60882 -36.80016 -36.42546 -35.86263 -35.43322 -34.28766 -31.92851 -30.61395 -30.18379 -27.56876 -25.65669 -23.90326 -23.05374 -22.45481 -20.52570 -18.85795 -17.98754 -17.51200 -16.69036 -16.27595 -15.63617 -15.20622 -14.78255 -14.47422 -14.23239 -13.82622 -13.69796 -13.66280 -13.26775 -13.04557 -12.57046 -12.22587 -12.10119 -12.00196 -11.85053 -11.60925 -11.37274 -11.31915 -11.21909 -11.02412 -10.73861 -10.64646 -10.63315 -10.52490 -10.40039 -10.28901 -10.10063 -9.33311 -8.96319 -8.43994 -8.11531 -7.79817 -6.57454 -4.05754 1.25776 1.46722 2.03801 2.51243 2.99824 3.18191 3.23816 3.26746 3.63472 3.80739 3.94832 4.05453 4.21162 4.54557 4.76243 4.84646 4.92842 5.07184 5.14936 5.20555 5.24513 5.38001 5.50001 5.65884 5.72989 5.83223 5.96766 5.98772 6.06869 6.17103 6.24477 6.43741 6.44815 6.67441 6.87609 7.40752 7.83247 8.20949 8.69821 8.93363 9.12967 9.67474 10.48469 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.004344 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.204893 B = 6444.020095 C = 7895.249150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.244 3.756 3 C 0.221 3.779 4 N -0.434 5.434 5 C -0.311 4.311 6 H 0.110 0.890 7 C 0.032 3.968 8 N -0.874 5.874 9 Si 0.925 3.075 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.476 3.524 14 O -0.556 6.556 15 C -0.161 4.161 16 H 0.116 0.884 17 C -0.151 4.151 18 C -0.098 4.098 19 H 0.120 0.880 20 C -0.017 4.017 21 C -0.014 4.014 22 C -0.115 4.115 23 C -0.023 4.023 24 Cl -0.078 7.078 25 C -0.118 4.118 26 C -0.017 4.017 27 Cl -0.071 7.071 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.273 0.727 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 11.861 4.258 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.075 4.075 3 C 0.094 3.906 4 N -0.153 5.153 5 C -0.438 4.438 6 H 0.128 0.872 7 C -0.172 4.172 8 N -0.513 5.513 9 Si 0.752 3.248 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.265 3.735 14 O -0.439 6.439 15 C -0.183 4.183 16 H 0.134 0.866 17 C -0.189 4.189 18 C -0.117 4.117 19 H 0.138 0.862 20 C -0.018 4.018 21 C -0.033 4.033 22 C -0.134 4.134 23 C -0.050 4.050 24 Cl -0.049 7.049 25 C -0.138 4.138 26 C -0.044 4.044 27 Cl -0.042 7.042 28 H 0.144 0.856 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.400 11.992 3.665 13.653 hybrid contribution 0.234 -1.014 -0.723 1.267 sum 5.633 10.979 2.941 12.685 Atomic orbital electron populations 1.80909 1.13626 1.10881 1.09674 1.29318 0.95391 0.91131 0.91614 1.18760 0.81552 1.02445 0.87878 1.43617 1.55881 1.03976 1.11850 1.19751 1.29950 0.92224 1.01904 0.87243 1.25283 0.94967 0.98767 0.98145 1.69874 1.19737 1.19304 1.42377 0.85871 0.79615 0.79896 0.79435 1.19072 1.20416 1.20887 1.19180 0.84207 0.82099 0.87996 1.90577 1.50397 1.71340 1.31553 1.22412 1.02119 0.93038 1.00702 0.86596 1.23113 0.95460 1.02022 0.98284 1.21000 1.02684 0.93262 0.94716 0.86174 1.18737 0.93532 0.94745 0.94812 1.20645 0.94020 0.93809 0.94793 1.20912 1.00388 0.97252 0.94830 1.20563 0.95082 1.00579 0.88780 1.98344 1.88089 1.87371 1.31109 1.20577 0.95151 1.02553 0.95504 1.20350 0.87634 1.00899 0.95548 1.98341 1.26453 1.90671 1.88771 0.85576 0.89681 0.91612 0.87823 0.87640 0.84824 0.85078 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.02 18.54 42.15 0.78 -10.23 16 2 C 0.24 5.22 12.80 -20.76 -0.27 4.96 16 3 C 0.22 4.14 4.80 -6.83 -0.03 4.11 16 4 N -0.43 -9.46 2.60 -117.93 -0.31 -9.76 16 5 C -0.31 -7.60 9.32 -14.93 -0.14 -7.74 16 6 H 0.11 2.83 7.39 -52.48 -0.39 2.44 16 7 C 0.03 0.77 4.86 -17.47 -0.08 0.69 16 8 N -0.87 -21.49 9.48 55.50 0.53 -20.96 16 9 Si 0.93 19.10 29.60 -169.99 -5.03 14.06 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.48 9.78 7.20 -10.98 -0.08 9.70 16 14 O -0.56 -12.64 11.33 5.55 0.06 -12.58 16 15 C -0.16 -2.56 4.81 -91.77 -0.44 -3.00 16 16 H 0.12 1.78 6.72 -51.93 -0.35 1.43 16 17 C -0.15 -1.81 9.57 -26.76 -0.26 -2.06 16 18 C -0.10 -1.40 5.55 -91.80 -0.51 -1.91 16 19 H 0.12 1.56 7.16 -51.93 -0.37 1.19 16 20 C -0.02 -0.27 4.38 -104.58 -0.46 -0.73 16 21 C -0.01 -0.22 6.16 -39.59 -0.24 -0.46 16 22 C -0.11 -1.71 9.83 -39.54 -0.39 -2.10 16 23 C -0.02 -0.34 6.32 -39.50 -0.25 -0.59 16 24 Cl -0.08 -1.03 28.96 -51.86 -1.50 -2.53 16 25 C -0.12 -1.77 9.62 -39.51 -0.38 -2.15 16 26 C -0.02 -0.27 6.31 -39.50 -0.25 -0.52 16 27 Cl -0.07 -1.03 27.42 -51.86 -1.42 -2.45 16 28 H 0.13 2.43 6.47 -51.93 -0.34 2.10 16 29 H 0.09 1.20 6.97 -51.93 -0.36 0.84 16 30 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.10 1.21 6.18 -51.93 -0.32 0.89 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.13 1.96 5.76 -52.49 -0.30 1.66 16 34 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -28.79 330.01 -8.53 -37.32 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.83 Total: 3.98 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -3.78 Total: -1.81 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 1.00 Total: -40.96 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.06 Total: -12.58 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.06 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -2.92 Total: -4.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.79 -8.53 -37.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089768366.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.372 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds